ID: uc002veb.2_intron_4_0_chr2_211163288_r.3p
GENE: (2)
chr2:211163238-211163487-


(24)
B-CELL
(1)
BRAIN
(6)
BREAST
(17)
CELL-LINE
(8)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(9)
LIVER
(1)
OTHER
(16)
SKIN
(4)
UTERUS

Sense strand
TTTTAAAATAACCCTGAAAAGAAATGCTAAGTTTTTGCCAATGATATTTGGAGATACAAAAAGAGAATCCAGGATAACAACTTGCATAGTTGGCAGAAGTTGTAAAACTGAAGAGTTTGAACTGAATTTTTGATAAGGTTAGGTTTAATTAATAGGTTAGAGGAAGAAAAGAGCACTCTAATGCTTCTTGCTTTTTGCAGAATTCAAGGAGGCATTTCTCCTGTTTGACAGAACAGGTGATTCCAAGATC
.............................................................................................................((((...(((((((.((((((....)))))).))))))).......(((((((.............))))))).))))...............................................................
...................................................................................................100........................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR343336SRR343337SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR343335SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040010(GSM532895)
G529N. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................AAACTGAAGAGTTTGATCAT..............................................................................................................................20164.000.0013.00-11.0010.0013.0010.0010.0010.00-7.0013.00-1.00-10.001.003.002.005.004.004.00--4.002.00--2.001.003.00--4.00-2.001.00-3.00-1.00-1.00---1.00--1.00--2.001.00---1.00-----1.00--1.00-1.00---1.00-----1.001.00-------1.00--------
........................................................................................................AAACTGAAGAGTTTGATC................................................................................................................................18126.000.002.0011.003.00-2.004.004.003.0021.00-2.0020.007.008.00-1.00-2.00--2.00-1.00----1.001.00-4.00--1.00--2.00-3.001.00--2.002.00---1.00--2.00--1.00---1.00---1.00----1.00------1.001.001.001.00--1.00----1.00-----1.001.00-1.00-
.........................................................................................................AACTGAAGAGTTTGATCAT..............................................................................................................................19084.002.009.00-9.008.008.002.002.004.001.00-5.00-6.003.003.00--1.001.002.001.00-1.00-3.00-2.00-1.00--2.00---1.00-----1.00--1.00---1.00-----1.001.00--1.00-1.00-------------------1.00--1.00-----------
........................................................................................................AAACTGAAGAGTTTGATCA...............................................................................................................................1970.000.005.009.007.0011.002.003.003.005.001.001.00--2.00-2.00-2.003.001.00-------3.00--1.00-2.00---1.001.00--1.00-----1.00-1.00----1.00---------------------------------------1.00--
.........................................................................................................AACTGAAGAGTTTGATCA...............................................................................................................................18045.002.005.0012.00---6.006.00-------1.00----1.00---2.001.005.00-1.00------1.00---------1.00-2.00----------------------------------------1.00-------
........................................................................................................AAACTGAAGAGTTTGATCCT..............................................................................................................................2031.000.00--1.00------6.001.00-3.005.00-6.00---1.00-4.003.00--------------------------1.00---------------------------------------------
........................................................................................................AAACTGAAGAGTTTGATCC...............................................................................................................................1917.000.00-1.00-----------1.00-3.00-1.00---2.001.00--------------------------1.00---------1.00---1.001.00-------1.00--------1.001.00--1.00---------
.........................................................................................................AACTGAAGAGTTTGATCCT..............................................................................................................................19016.002.00-1.00-------9.00---1.00-1.003.00-----------1.00------------------------------------------------------------------
.........................................................................................................AACTGAAGAGTTTGATCT...............................................................................................................................1803.002.00-------3.00---------------------------------------------------------------------------------------
............................................................................................................TGAAGAGTTTGAACTCTG............................................................................................................................182.000.00----------------------------------------------------------------------------------------1.001.00-----
.........................................................................................................AACTGAAGAGTTTGA..................................................................................................................................1502.002.00----------------------------------------2.00------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGATTAT..............................................................................................................................201.000.00---------------------------1.00-------------------------------------------------------------------
.........................................................................................................AACTGAAGAGTTTGATAAT..............................................................................................................................1901.002.00------------------1.00----------------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGATCG...............................................................................................................................191.000.00----------------------------1.00------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGATAA...............................................................................................................................191.000.001.00----------------------------------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGAGCCT..............................................................................................................................201.000.00----------------1.00------------------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGCTC................................................................................................................................181.000.00----1.00------------------------------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGAAA................................................................................................................................181.000.001.00----------------------------------------------------------------------------------------------
.....................AAATGCTAAGTTTTTTT....................................................................................................................................................................................................................171.000.00----------------------------------------------------------------------------------------------1.00
.........................................................................................................AACTGAAGAGTTTGATAA...............................................................................................................................1801.002.00---------------------------------------------------------------------1.00-------------------------
........................................................................................................AAACTGAAGAGTTTGACC................................................................................................................................181.000.00--------1.00--------------------------------------------------------------------------------------
........................................................................................................AAACTGAAGAGTTTGATGT...............................................................................................................................191.000.00----------------------------------------------------------------------1.00------------------------
........................................................................................................AAACTGAAGAGTTTGATAAT..............................................................................................................................201.000.00---1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................AAGAGCACTCTAATG...................................................................1560.500.50------------0.17--0.17-----0.17-------------------------------------------------------------------------
........................................................................................................................................................................AAGAGCACTCTAATGAGA................................................................1860.170.50---------------------0.17-------------------------------------------------------------------------

Antisense strand
TTTTAAAATAACCCTGAAAAGAAATGCTAAGTTTTTGCCAATGATATTTGGAGATACAAAAAGAGAATCCAGGATAACAACTTGCATAGTTGGCAGAAGTTGTAAAACTGAAGAGTTTGAACTGAATTTTTGATAAGGTTAGGTTTAATTAATAGGTTAGAGGAAGAAAAGAGCACTCTAATGCTTCTTGCTTTTTGCAGAATTCAAGGAGGCATTTCTCCTGTTTGACAGAACAGGTGATTCCAAGATC
.............................................................................................................((((...(((((((.((((((....)))))).))))))).......(((((((.............))))))).))))...............................................................
...................................................................................................100........................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)
SRR343336SRR343337SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR343335SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040010(GSM532895)
G529N. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................AATGATATTTGGAGAATAA................................................................................................................................................................................................ 192.000.00---------------------------------2.00-------------------------------------------------------------
............................................................................................................................................................................GCACTCTAATGCTTCTAAAG.......................................................... 201.000.00--------------------------------------------------------------------1.00--------------------------