ID: uc002umb.1_intron_2_0_chr2_179295617_f.5p
GENE: BX538254(3)
chr2:179295567-179295816+


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BREAST 		(12)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ACAGATGGAAGACTTGAGATGTTACAAGATTATATATGGAAACACAAAAGGTAAGGTTAAAATCTGTTCATTAGACTTATTTCCTAACCTTTTAATCACTCATCACTTTGGAACATTCTTGCAACTGAACTGAATAAGCTGGGAAGGTTTTTTGGGTAATTCTACTAACGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGCTGTGATCC
.........................................................................((.((((((...((((((((.........(((.(((((..((....))...))))).)))........))))))))....)))))).))........................................................................................
.........................................................................74............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTC........................................................277.000.00-7.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTGGG..........................................................256.000.00-6.00-------------------------
.....TGGAAGACTTGAGATTTTG..................................................................................................................................................................................................................................195.000.00---4.00--------1.00--------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCGAG........................................................275.000.00-5.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTGC...........................................................254.000.00-4.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTGGG.......................................................284.000.00-4.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGGG........................................................274.000.00-3.001.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGC.........................................................264.000.00-4.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCC........................................................274.000.00-3.001.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTGC...........................................................244.000.00-4.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCC.........................................................264.000.00-4.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGGG...........................................................243.000.00-3.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTAAT.........................................................263.000.00-3.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTAATT........................................................273.000.00-3.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTGC..........................................................263.000.00-3.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTGC............................................................243.000.00-3.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTGC.....................................................303.000.00-3.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGGG.........................................................263.000.00-2.001.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTCGC..........................................................263.000.00--3.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCG.........................................................263.000.00-3.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTGGG....................................................312.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTCGG............................................................232.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTCT.......................................................282.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTCG....................................................312.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCGAG.......................................................282.000.00-1.001.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGGAG........................................................272.000.00--2.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCTTG........................................................272.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTCGAG....................................................312.000.00-1.001.00------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA.....................................272.000.00----------2.00----------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTC.......................................................282.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGGAG..........................................................252.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTCGG.............................................................222.000.00-1.001.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTCTT...........................................................252.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTAAT.......................................................282.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTAAG...........................................................242.000.00-1.00-----------------------1.00-
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGC......................................................292.000.00-2.00-------------------------
.........................................................................................................................................................................................................................TGTCACCCAGGCTGGAGTGCAGTGCTGTAC...302.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCTGC.........................................................262.000.00-1.001.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTGG...................................................322.000.00-2.00-------------------------
.................................................................................................................................................................................................................................AGGCTGGAGTGCAGTGCTGTGGCCT252.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTC......................................................292.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGG..........................................................252.000.00-1.00--1.00----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTGG.....................................................302.000.00--2.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGGGG........................................................272.000.00-2.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTGC.............................................................232.000.00-1.001.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTGC.......................................................292.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTC.....................................................302.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCGG.......................................................282.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTC..........................................................252.000.00-2.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTAGG............................................................231.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTCCCC............................................................231.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCTT........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGTCC.......................................................281.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTCG......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTAAAT........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGGGG....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCG...........................................................241.000.00-1.00-------------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT.....................................301.000.00------1.00--------------------
.........................................................................................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTC................................................331.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTC..........................................................261.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTCGAG...................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTCCCT....................................................311.000.00-1.00-------------------------
......................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC.....................................311.000.00--1.00------------------------
.........................................................................................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTCTAT..................................................311.000.00--------1.00------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTGAGG...................................................321.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTGGCG..............................................................211.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCCGG........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGAAA....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGCTC....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAT..................................................331.000.00--1.00------------------------
.....TGGAAGACTTGAGATTCG...................................................................................................................................................................................................................................181.000.00---1.00-----------------------
.........................................................................................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTCTAG..................................................311.000.00----1.00----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGGGG..........................................................251.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTCC.......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTAAC.........................................................261.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTGTGG................................................................201.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCCT..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTCG...............................................................201.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGGC........................................................271.000.00-1.00-------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG......................................261.000.00----1.00----------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTC...........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTGTG......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTAGAG...........................................................241.000.00--1.00------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG.....................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTCCT...............................................................201.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTAAT..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTCTC.............................................................221.000.00-1.00-------------------------
...........................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC.....................................261.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTAGC........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTCTGG................................................................191.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGGC.................................................331.000.00-----1.00---------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTCTGC...........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTATTG...........................................................241.000.00--------1.00------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTTCC...................................................331.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTCTTG...................................................321.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTCG......................................................301.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTTC....................................................321.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTAC........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCG..........................................................251.000.00-1.00-------------------------
..........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC..............................................341.000.00-----1.00---------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTCCCC..................................................321.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTAATC........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTAAAT.........................................................261.000.00-1.00-------------------------
.........................................................................................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGG...............................................341.000.00-----1.00---------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCCTG.......................................................281.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTCC.....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTCGAG..............................................................211.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGTCT........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGGGG.......................................................281.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTATT...........................................................251.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTCGC....................................................321.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTAGGT.................................................................191.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGTC...........................................................241.000.00-1.00-------------------------
...............................................................................................................................................................................................................................CCAGGCTGGAGTGCAGTGCTGTGACCAC281.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTCTTC.....................................................311.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTATTT.........................................................261.000.00------1.00--------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTGTAG.........................................................261.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTGC......................................................301.000.00-1.00-------------------------
.........................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG.....................................281.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTCGGG........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCCCC.......................................................281.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTCGG....................................................321.000.00-1.00-------------------------
.............................................................................................................................................................................................................AGGGTCTCACTCTGTCACCCAGGCTCGGG................291.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTGGC.......................................................281.000.00-1.00-------------------------
.....TGGAAGACTTGAGATTTAG..................................................................................................................................................................................................................................191.000.00---1.00-----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTCTTT..................................................331.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTCTT..........................................................261.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTAAAG.....................................................291.000.00-----1.00---------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTAAAT.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTCTTC.............................................................221.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCGGC.........................................................261.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTCC........................................................261.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTCGTG........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTACC.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTACC...........................................................241.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTGGGG......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGCCC..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTATT.........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTCTGC....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCTTG.......................................................281.000.00-1.00-------------------------
.........................................................................................................................................................................................................................................GTGCAGTGCTGTGATACG181.000.00---------1.00-----------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTACG...............................................................211.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGTG........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGTG.....................................................301.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCG........................................................271.000.00-1.00-------------------------
..........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACATT............................................361.000.00-----1.00---------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCAG........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTGAAA........................................................271.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTCC............................................................241.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTAT...................................................321.000.00-----1.00---------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG......................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTAATT..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTGTG..................................................331.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTGGGG........................................................281.000.00-1.00-------------------------
........................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG.....................................291.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTCTGC...............................................................211.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTCCGT................................................................191.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTGCC.....................................................311.000.00-1.00-------------------------
..........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA.............................................351.000.00----1.00----------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTAATG....................................................301.000.00------1.00--------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCCC..........................................................251.000.00-1.00-------------------------
..............................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGCTAAGT...251.000.00---------------1.00-----------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTGC.........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTCG............................................................231.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTGGAC..............................................................211.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTCGC.........................................................271.000.00-1.00-------------------------
..............................................................................ATTTCCTAACCTTTTAATG.........................................................................................................................................................191.000.00------------------1.00--------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTTCT..................................................331.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTAT........................................................271.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTA.....................................................301.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTAACC.........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTATG.....................................................301.000.00----1.00----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTCTTG..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTGGGA..........................................................251.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTCGGG........................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTGAGT...................................................321.000.00--1.00------------------------
.....................................................................................................................................................................................................................................TGGAGTGCAGTGCTGTGCTTG211.000.00---1.00-----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTGGGG......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTCCT...........................................................241.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTAAC.....................................................311.000.00------1.00--------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCTTT........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCTGG.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTAAAA.....................................................301.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTGGGG.....................................................301.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTCT......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTCC.......................................................281.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTCTGT.....................................................301.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGAAC....................................................311.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT................................................341.000.00----1.00----------------------
.....................................................................................................................................................................TAACGCTTTTTTTTTTTTGAT................................................................211.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTCTG....................................................311.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTAATT.......................................................281.000.00-1.00-------------------------
.........................................................................................................................................................................................................................................GTGCAGTGCTGTGATAACT191.000.00---------1.00-----------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCAG..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTAGAA...................................................321.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCGAG.........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTGCC.......................................................281.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTGGG........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTGGAT.....................................................301.000.00------1.00--------------------
..........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTAC............................................361.000.00--------1.00------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCCC.......................................................281.000.00-1.00-------------------------
.........................................................................................................................................................................................................................................GTGCAGTGCTGTGATATTT191.000.00------------------------1.00--
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTCT..........................................................251.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTGG.......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTCC....................................................311.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTGTTT......................................................281.000.00----1.00----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTAGG......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTCGAG.............................................................221.000.00-1.00-------------------------
.........................................................................................................................................................GGGTAATTCTACTAAAACT..............................................................................191.000.00-------------1.00-------------
.............................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAGTGCTTGC....251.000.00-1.00-------------------------
.........................................................................................................................................................................................................................................GTGCAGTGCTGTGATACC181.000.00--------------1.00------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTAGG........................................................271.000.00-1.00-------------------------
............................................................................................................................................................................................................................CACCCAGGCTGGAGTGCAGTGCT.......2301.001.00-----------------------1.00---
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTCTGC.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTACC........................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCGC.......................................................281.000.00--1.00------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTCC....................................................321.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTCAG.............................................................221.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTCGGG..........................................................261.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCTTT.........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTCCTG.....................................................301.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTCG.........................................................271.000.00------1.00--------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTGGGA.........................................................261.000.00--1.00------------------------
....................................................................................................CATCACTTTGGAACATTCTTGCAACTGAACTG......................................................................................................................3211.001.00----------------------1.00----
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTGGC......................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTGGG...............................................................201.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTATAG............................................................231.000.00----1.00----------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTGGT......................................................291.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTGGGG.......................................................271.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTCGA..............................................................211.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTCTG..........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTCCCT.........................................................261.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTAGGT...........................................................241.000.00-1.00-------------------------
.....TGGAAGACTTGAGATTTG...................................................................................................................................................................................................................................181.000.00---1.00-----------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTTT...........................................341.000.00------1.00--------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTGTAG......................................................291.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTCCGG......................................................291.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGTAG.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTGAGG.......................................................281.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTAAC..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTCTTC...........................................................241.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTGGG.....................................................291.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT.................................................341.000.00-----1.00---------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTGTC..............................................................221.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGGG.....................................................301.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTTGCCC....................................................311.000.00--1.00------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTCGAG..........................................................251.000.00-1.00-------------------------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTGTTT..............................................................211.000.00--1.00------------------------
.CAGATGGAAGACTTGAGATGTTACAAGATTAT.........................................................................................................................................................................................................................3211.001.00-------------------1.00-------
.......................................................................................................................................................................ACGCTTTTTTTTTTTTTTTTTTTTTTAAT......................................................291.000.00-1.00-------------------------
.....................................................................................................................................................................TAACGCTTTTTTTTTTTTTTTTTTTTTTTTTTT....................................................3350.200.20-0.20-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................3480.120.12-0.12-------------------------

Antisense strand
ACAGATGGAAGACTTGAGATGTTACAAGATTATATATGGAAACACAAAAGGTAAGGTTAAAATCTGTTCATTAGACTTATTTCCTAACCTTTTAATCACTCATCACTTTGGAACATTCTTGCAACTGAACTGAATAAGCTGGGAAGGTTTTTTGGGTAATTCTACTAACGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGCTGTGATCC
.........................................................................((.((((((...((((((((.........(((.(((((..((....))...))))).)))........))))))))....)))))).))........................................................................................
.........................................................................74............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT................................................. 3373.000.0073.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGTTT.................................................. 3249.000.0049.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT................................................. 3345.000.0045.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGCTT................................................. 3322.000.0022.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAC................................................. 3316.000.0016.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGTGT................................................. 3311.000.0011.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGTAT.................................................. 3211.000.0011.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGTGT.................................................. 3211.000.0011.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGCTT.................................................. 3211.000.0011.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGATT.................................................. 3210.000.0010.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGCCT................................................. 338.000.008.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT................................................. 338.000.008.00--------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTGT.................................................... 326.000.006.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA................................................. 335.000.005.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGCCT.................................................. 324.000.004.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGACG.................................................. 324.000.004.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGACT................................................. 333.000.003.00--------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTGT..................................................... 313.000.003.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAAT................................................. 332.000.002.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTG................................................... 312.000.00-------2.00-------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGAAT.................................................. 322.000.002.00--------------------------
..................................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGTGATGAGC 262.000.00--2.00------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCC................................................. 332.000.002.00--------------------------
........................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGCG..................................................... 2902.002.00-------2.00-------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGACT.................................................. 322.000.002.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGGTA.................................................. 322.000.002.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGGAA.................................................. 321.000.001.00--------------------------
.........................................................................................................................................................AAAAAAGCGTTAGTAGAATTACCC......................................................................... 2411.001.00-----------1.00---------------
..................................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGAGA... 211.000.00--1.00------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT................................................ 341.000.00----------------1.00----------
..................................................................................................................................................GCGTTAGTAGAATTACCCAAAAAAC............................................................................... 2511.001.00---------------------1.00-----
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTCT.................................................... 321.000.001.00--------------------------
..............................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGCTGTGATCGAG 301.000.00-1.00-------------------------
..................................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGTGATGG 241.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA................................................. 331.000.001.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGT................................................. 331.000.001.00--------------------------
....................................................................................................................................................................................................................................CTGGAGTGCAGTGCTGTGGGC. 211.000.00-1.00-------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGAGT.................................................. 321.000.001.00--------------------------
..................................................................................................................................................................................................................................GGCTGGAGTGCAGTGCTGCGC... 211.000.00--1.00------------------------
........................................................................................................................................................................................................................CTGTCACCCAGGCTGGAGTGCAGTGCTGTGGAG. 331.000.00-1.00-------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTGTT..................................................... 311.000.001.00--------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTG..................................................... 311.000.001.00--------------------------
......................................................................................................................................................................AACGCTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................... 311.000.001.00--------------------------
.....................................................AGGTTAAAATCTGTTACC................................................................................................................................................................................... 181.000.00--------------------------1.00
........................................................TTAAAATCTGTTCATTAAA............................................................................................................................................................................... 191.000.00--------------------1.00------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGCGT.................................................. 321.000.001.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTGTGC.................................................. 321.000.001.00--------------------------
........................................................................................................................................................................CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAC................................................ 341.000.00-----------------1.00---------