ID: uc002ugh.2_intron_2_0_chr2_171678660_f.5p
GENE: (3)
chr2:171678610-171678859+


(2)
B-CELL 		(3)
BRAIN 		(23)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(3)
HELA 		(1)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTCAAGATCTGCGGTAAGTGACAGGACCCACTGGGGCCCGGCTGGGTGGCGCGGCGGGCGGACCTTTGGGGCTTGGGAGACTGGGACGCAAGCGGAGGGGGATCCGGGCTCATGGGTCTGATTTTCTAATGTAATTACAGCCAGGACAGCCAGCGACCACGCTCCCCTACAGGCCCTGACCCTCCTCTGCCCGCCCCAGACCTGGTCCCCAGG
...............................................................((((..((.((((.((((.......))))))))...))..))))...............................................................................................................................................
..............................................................63..............................................111.........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)
..........................................................................................GCGGGCGGACCTTTG.................................................................................................................................................151331.00331.00-107.0072.0070.0031.009.004.005.00--6.00-5.003.004.001.002.001.002.002.001.001.002.00-1.00---1.00-1.00-----------------------
..........................................................................................GCGGGCGGACCTTTGA................................................................................................................................................161114.00331.00-32.0036.0018.004.004.002.005.00--2.00-1.00--2.00-1.00--1.001.00--1.00------1.00----1.00----1.00----------1.00-
..........................................................................................GCGGGCGGACCTTTGAA...............................................................................................................................................171101.00331.0064.0010.008.002.003.00-1.001.003.002.001.002.001.001.00--1.00-------------------------------1.00-----
..........................................................................................GCGGGCGGACCTTTGAAA..............................................................................................................................................18187.00331.0067.00----2.004.00-7.003.00-------------2.00-----------------------1.00--1.00---
..........................................................................................GCGGGCGGACCTTTGAAAA.............................................................................................................................................19148.00331.0035.00----1.001.00-1.003.00--1.00----1.00-------1.00-1.00------------1.00-1.00--------1.00--
..........................................................................................GCGGGCGGACCTTTGAG...............................................................................................................................................17120.00331.0017.00----1.00-----1.00----------------------1.00-------------------
..........................................................................................GCGGGCGGACCTTTGAAG..............................................................................................................................................18117.00331.0016.00------1.00----------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAAGA.............................................................................................................................................19116.00331.0015.00-------------------------------1.00---------------------
..........................................................................................GCGGGCGGACCTTTGAAAG.............................................................................................................................................1917.00331.006.00-----1.00-----------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAT...............................................................................................................................................1717.00331.004.001.001.001.00--------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAATA.............................................................................................................................................1917.00331.007.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGGA...............................................................................................................................................1715.003.00--1.00--------4.00------------------------------------------
..........................................................................................GCGGGCGGACCTTTGGAAG.............................................................................................................................................1915.003.005.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAAT..............................................................................................................................................1814.00331.004.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGTA...............................................................................................................................................1714.00331.002.00--2.00--------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGG................................................................................................................................................1613.003.00--1.00-1.00-1.00-----------------------------------------------
..........................................................................................GCGGGCGGACCTTTGTAA..............................................................................................................................................1813.00331.002.00--------1.00--------------------------------------------
..........................................................................................GCGGGCGGACCTTTGTATA.............................................................................................................................................1912.00331.002.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGGAAA.............................................................................................................................................1912.003.002.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGATAA.............................................................................................................................................1912.00331.002.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAGA..............................................................................................................................................1812.00331.002.00-----------------------------------------------------
...................................................................................................CCTTTGGGGCTTGGGAAATT...................................................................................................................................202.000.00--------------------------2.00---------------------------
.........................................................................................GGCGGGCGGACCTTTT.................................................................................................................................................1611.001.00--------------------------------------------1.00---------
..........................................................................................GCGGGCGGACCTTTGAACA.............................................................................................................................................1911.00331.00-----1.00------------------------------------------------
...............................................................................TGGGTGGCGCGGCGGGCCG........................................................................................................................................................191.000.00----------------------------------------------1.00-------
..........................................................................................GCGGGCGGACCTTTGTTG..............................................................................................................................................1811.00331.00-------------------------1.00----------------------------
..........................................................................................GCGGGCGGACCTTTGAAC..............................................................................................................................................1811.00331.00---------------------------------------1.00--------------
..........................................................................................GCGGGCGGACCTTTGAAGT.............................................................................................................................................1911.00331.001.00-----------------------------------------------------
.........................AGAAAACTGGGGCTCAAGATCT...........................................................................................................................................................................................................2211.001.00-----------------------------1.00------------------------
........TGGCCCATGGATGCACC.................................................................................................................................................................................................................................1711.001.00---------------------------------1.00--------------------
.................................GGGGCTCAAGATCTGCGGC......................................................................................................................................................................................................191.000.00-----------------------------------1.00------------------
.........................................................................................GGCGGGCGGACCTTT..................................................................................................................................................1511.001.00---1.00--------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGATA..............................................................................................................................................1811.00331.001.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGAGGA.............................................................................................................................................1911.00331.001.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGGGCGG............................................................................................................................................201.000.00---1.00--------------------------------------------------
.................................GGGGCTCAAGATCTGCGGCT.....................................................................................................................................................................................................201.000.00-------------------------------------------------1.00----
................................................................................GGGTGGCGCGGCGGGCTCGA......................................................................................................................................................201.000.00-------------------------------------1.00----------------
...................................................................CTGGGGCCCGGCTGGGGGCT...................................................................................................................................................................201.000.00---------------------------------------------1.00--------
..........................................................................................GCGGGCGGACCTTTGTAT..............................................................................................................................................1811.00331.00---------1.00--------------------------------------------
..........................................................................................GCGGGCGGACCTTTGTGA..............................................................................................................................................1811.00331.001.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGCG...............................................................................................................................................1711.00331.00-----------1.00------------------------------------------
..........................................................................................GCGGGCGGACCTTTGGGGGTGG..........................................................................................................................................221.000.00-----------------------------------------------------1.00
..........................................................................................GCGGGCGGACCTTTGGATA.............................................................................................................................................1911.003.001.00-----------------------------------------------------
..........................................................................................GCGGGCGGACCTTTGTG...............................................................................................................................................1711.00331.00-----------1.00------------------------------------------
..........................................................................................GCGGGCGGACCTTTGT................................................................................................................................................1611.00331.00--1.00---------------------------------------------------

Antisense strand
GTGCGGCGTGGCCCATGGATGCACCAGAAAACTGGGGCTCAAGATCTGCGGTAAGTGACAGGACCCACTGGGGCCCGGCTGGGTGGCGCGGCGGGCGGACCTTTGGGGCTTGGGAGACTGGGACGCAAGCGGAGGGGGATCCGGGCTCATGGGTCTGATTTTCTAATGTAATTACAGCCAGGACAGCCAGCGACCACGCTCCCCTACAGGCCCTGACCCTCCTCTGCCCGCCCCAGACCTGGTCCCCAGG
...............................................................((((..((.((((.((((.......))))))))...))..))))...............................................................................................................................................
..............................................................63..............................................111.........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)
.......................................................................................................................................................................................CGTGGTCGCTGGCTG.................................................... 1511.001.00-------------------------------------------1.00----------
....................................................................................GGCGCGGCGGGCGGACGGGG.................................................................................................................................................. 201.000.00--------------------------------------1.00---------------
................................................................................CGCCCGCCGCGCCACCC......................................................................................................................................................... 1711.001.00-------------1.00----------------------------------------