ID: uc002tpg.1_intron_19_0_chr2_128526576_r.5p
GENE: (2)
chr2:128528152-128528401-


(4)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(3)
BREAST
(20)
CELL-LINE
(3)
CERVIX
(1)
HELA
(3)
LIVER
(1)
OTHER
(4)
SKIN
(1)
UTERUS

Sense strand
TGAACCGAAAAACCATAGACTACAATCCATCTGTAATTAAGTATTTGGAGGTAAGCCTGATTTATGTGCTTCAGATGACCAAACTTTGGTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGATGGAGTTTCTTTCTTGTTGCCCAGGCCAGAGTGCAGTGGTGTGGTTTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCTTCCCAAGTAG
...................................................................................................................................................(((..((((.....))))..))).((((((((.((.......))))))))))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343334SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM532878(GSM532878)
G691T. (cervix)
......................................................................................................TATTTATTTATTTATTTATTTATTTATTTATCAG..................................................................................................................3416.000.008.00--4.004.00-------------------------------------
...........................................................................................................ATTTATTTATTTATTTATTTATCATG.....................................................................................................................2612.000.006.00---6.00-------------------------------------
...............................................................................................ATTTATTTATTTATTTATTTATTTATTTATCAG..........................................................................................................................3312.000.004.00----4.00---4.00--------------------------------
........................................................................................................TTTATTTATTTATTTATTTATTTATTTATCTCG.................................................................................................................338.000.008.00-----------------------------------------
........................................................................................................TTTATTTATTTATTTATTTATTTATTTATCCG..................................................................................................................328.000.00---8.00--------------------------------------
.....................................................................................................TTATTTATTTATTTATTTATTTATCATG.........................................................................................................................286.000.006.00-----------------------------------------
.....................................................................................................TTATTTATTTATTTATTTATTTATCTCG.........................................................................................................................286.000.006.00-----------------------------------------
...............................................................................................ATTTATTTATTTATTTATTTATTTATCTCG.............................................................................................................................305.000.00-----5.00------------------------------------
...................................................................................................ATTTATTTATTTATTTATTTATTTATCTGC.........................................................................................................................305.000.00--5.00---------------------------------------
..................................................................................................TATTTATTTATTTATTTATTTATTTATCTGC.........................................................................................................................315.000.00-5.00----------------------------------------
........................................................................................................TTTATTTATTTATTTATTTATTTATCTGC.....................................................................................................................295.000.00-5.00----------------------------------------
...........................................................................................................ATTTATTTATTTATTTATTTATTTATCGGT.................................................................................................................305.000.00-5.00----------------------------------------
.......AAAAACCATAGACTACAATC...............................................................................................................................................................................................................................2015.005.00------1.00-4.00---------------------------------
...................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCTG.....................................................................................................................344.000.004.00-----------------------------------------
.......................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCG..................................................................................................................334.000.00---4.00--------------------------------------
.....................................................................................................TTATTTATTTATTTATTTATTTATTTATTTATCAG..................................................................................................................354.000.004.00-----------------------------------------
.......AAAAACCATAGACTACAATCCATCTG.........................................................................................................................................................................................................................2614.004.00------3.00-------------------------------1.00---
...................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCC......................................................................................................................334.000.004.00-----------------------------------------
.......AAAAACCATAGACTACAATCCATCTGA........................................................................................................................................................................................................................2713.004.00------2.00-1.00---------------------------------
................................................................................................................TTTATTTATTTATTTATTTATTTTGACAAC............................................................................................................302.000.00-2.00----------------------------------------
...........................................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTCCCGGGGC.................................302.000.00-1.001.00---------------------------------------
......GAAAAACCATAGACTACAATCC..............................................................................................................................................................................................................................2212.002.00----------1.00--------------------1.00----------
..........................................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGCCC................................322.000.00-1.001.00---------------------------------------
................................................................................................................................................................................TGGTGTGGTTTTGGCTCACTGCACC.................................................251.000.00-1.00----------------------------------------
.................................................................................................................................................TTTCTTTCTTGTTGCCGTTT.....................................................................................201.000.00-1.00----------------------------------------
..................ACTACAATCCATCTGTAACTAA..................................................................................................................................................................................................................221.000.00--------1.00---------------------------------
.............................................................................................................................................................TGCCCAGGCCAGAGTGCAGTCGCG.....................................................................241.000.00--1.00---------------------------------------
....................................................................................................................................................................................................GCAACCTCTGCCTCCCGGGTTCT...............................231.000.00-----------------------------------1.00------
........................................................................................GTTATTTATTTATTTATTTATTTATCG.......................................................................................................................................271.000.001.00-----------------------------------------
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGAGACC......................241.000.00--1.00---------------------------------------
...........................................................................................................................................................................................................CTGCCTCCCGGGTTCAATTAT..........................211.000.00------------1.00-----------------------------
.....CGAAAAACCATAGACTACAATCCAT............................................................................................................................................................................................................................2511.001.00--------------------------1.00---------------
.............................................................................................................................................................TGCCCAGGCCAGAGTGCAGTGACC.....................................................................241.000.00--1.00---------------------------------------
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCCGTC.................291.000.00--1.00---------------------------------------
.............................................................................................................TTATTTATTTATTTATTTATTTATTTTGACTC.............................................................................................................321.000.00-1.00----------------------------------------
..........................................................................................................................................................TGTTGCCCAGGCCAGAGTGCAGTCGC......................................................................261.000.00-1.00----------------------------------------
..............................................................................................................................................................GCCCAGGCCAGAGTGCAGTGGTGTGG..................................................................2611.001.00-1.00----------------------------------------
..............................................................................................................TATTTATTTATTTATTTATTTATTTTGAAGCC............................................................................................................321.000.00--1.00---------------------------------------
...........................................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTCGACG....................................271.000.00--1.00---------------------------------------
...........................................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAGG......................................251.000.00--1.00---------------------------------------
..................................AATTAAGTATTTGGAGAAC.....................................................................................................................................................................................................191.000.00--------------------1.00---------------------
.........................................................................................................................................................................................TTTGGCTCACTGCAACCGGAC............................................211.000.00-1.00----------------------------------------
............................................................................................................................................................TTGCCCAGGCCAGAGTGCAGTCGCG.....................................................................251.000.00-1.00----------------------------------------
..........................................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGCG.................................311.000.00-1.00----------------------------------------
.................................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT............291.000.00--------------------------------1.00---------
..........................................................................................................................................................TGTTGCCCAGGCCAGAGTGCAGTC........................................................................241.000.00-1.00----------------------------------------
...........................................................................................................ATTTATTTATTTATTTATTTATTTATTTTGATATT............................................................................................................351.000.00---1.00--------------------------------------
.......................................AGTATTTGGAGGTAAGCCTGATT............................................................................................................................................................................................2311.001.00------------------------------------1.00-----
...........................................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAAA......................................251.000.00-----------------------1.00------------------
.................................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG..............271.000.00----------------------------1.00-------------
..........................................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGGC.................................311.000.00-1.00----------------------------------------
.........AAACCATAGACTACAATCCATCT..........................................................................................................................................................................................................................2311.001.00----------1.00-------------------------------
......................................................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA...........251.000.00---------------1.00--------------------------
..............................................................................................................................................................GCCCAGGCCAGAGTGCAGTGAAT.....................................................................231.000.00------------------1.00-----------------------
.................................................................................................................................................................................................................................TCTCCTGCCTCAGCTTCCCAAGTAGACGG291.000.00-1.00----------------------------------------
.........AAACCATAGACTACAATCCATA...........................................................................................................................................................................................................................221.000.00----------------1.00-------------------------
...........................................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAGGT.....................................261.000.00--1.00---------------------------------------
........................................................................................GTTATTTATTTATTTATTTATTTATTTATTTACG................................................................................................................................341.000.00----1.00-------------------------------------
......GAAAAACCATAGACTACAATCCATC...........................................................................................................................................................................................................................2511.001.00----------1.00-------------------------------
..................................................................................................................................................................................................................................CTCCTGCCTCAGCTTCCCACGTC.231.000.00------------------------------1.00-----------
.........................................................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA...........221.000.00---------------------1.00--------------------
.......AAAAACCATAGACTACAATCCATCCG.........................................................................................................................................................................................................................261.000.00------1.00-----------------------------------
..................................................................................ACTTTGGTTATTTATTTATTTATTTATTTA..........................................................................................................................................3020.500.50-0.50----------------------------------------
.......................................................................................................................................................................AGAGTGCAGTGGTGTGGTTTTGG............................................................2320.500.50--0.50---------------------------------------
...........................................................................................................................................................................TGCAGTGGTGTGGTTTTGGCTCACTGC....................................................2770.140.14-0.14----------------------------------------
.........................................................................................................................................................................AGTGCAGTGGTGTGGTTTT..............................................................1990.110.11-----------------------------------------0.11

Antisense strand
TGAACCGAAAAACCATAGACTACAATCCATCTGTAATTAAGTATTTGGAGGTAAGCCTGATTTATGTGCTTCAGATGACCAAACTTTGGTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGATGGAGTTTCTTTCTTGTTGCCCAGGCCAGAGTGCAGTGGTGTGGTTTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCTTCCCAAGTAG
...................................................................................................................................................(((..((((.....))))..))).((((((((.((.......))))))))))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR343334SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
GSM532878(GSM532878)
G691T. (cervix)
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCATC.................. 285.000.00-------5.00----------------------------------
............................................................................................................................................................TTGCCCAGGCCAGAGTGCAGTGGTGTAAGC................................................................ 302.000.00-2.00----------------------------------------
............................................................................................................................................................TTGCCCAGGCCAGAGTGCAGTT........................................................................ 222.000.00-------------2.00----------------------------
..................................................................................................................................................................................................................................CTCCTGCCTCAGCTTCCCAAGTTTAA 262.000.00--------------2.00---------------------------
................................................................................................................................................................................................................................TTCTCCTGCCTCAGCTTCCCAACCCC 262.000.00-2.00----------------------------------------
................................................................................................................................................................................................................................TTCTCCTGCCTCAGCTTCCCAAGTCCC 272.000.00-2.00----------------------------------------
.......................................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGTGATCGTG..................... 302.000.00-2.00----------------------------------------
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCATG.................. 281.000.00------------1.00-----------------------------
..............................................................................................................................................................................................................................GATTCTCCTGCCTCAGCTTCCCACTG.. 261.000.00-1.00----------------------------------------
.......................................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGGGC.......................... 251.000.00-------------------------1.00----------------
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTATTT........................ 221.000.00----------------------------------------1.00-
..........................................................................................................................................................................................................TCTGCCTCCCGGGTTCAAGTTG.......................... 221.000.00-----------1.00------------------------------
..............................................GGAGGTAAGCCTGATTTCA......................................................................................................................................................................................... 191.000.00----------------1.00-------------------------
...................................................................................................................................................................GGCCAGAGTGCAGTGGTGTGGGG................................................................ 231.000.00-1.00----------------------------------------
....................................................................................................................................................................................................................................CCTGCCTCAGCTTCCCAAGTTAG 231.000.00--1.00---------------------------------------
..............................................................................................................................................................................................................................GATTCTCCTGCCTCAGCTTCCCATTA.. 261.000.00-----------------------------1.00------------
....................................................................................................................................................CTTTCTTGTTGCCCAGATC................................................................................... 191.000.00-------------------1.00----------------------
...............................................................................................................................................................CACTGCACTCTGGCCTGGG........................................................................ 1901.001.00-----------1.00------------------------------
............................................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCA.................... 261.000.00---------------------------1.00--------------
................................................................................................................................................................................................................................TTCTCCTGCCTCAGCTTGGCC..... 211.000.00-1.00----------------------------------------
............................................................................................................................................................TTGCCCAGGCCAGAGTGCAGTGT....................................................................... 231.000.00-------------1.00----------------------------
.......................................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGTGCCC........................ 271.000.00--1.00---------------------------------------
................................................................................................................................................................................................CACTGCAACCTCTGCCTCCCGGGTTGCA.............................. 281.000.00--1.00---------------------------------------
......................................................................................................................................................................................................AACCTCTGCCTCCCGGGTTCG............................... 211.000.00--1.00---------------------------------------
...................................................................................................................................................................GGCCAGAGTGCAGTGGTGGGC.................................................................. 211.000.00--1.00---------------------------------------
..............................................................................................................................................................GCCCAGGCCAGAGTGCAGTTT....................................................................... 211.000.00------------------------1.00-----------------
.................................................................................................................................................................................................................................TCTCCTGCCTCAGCTTCCCACCAC. 241.000.00--1.00---------------------------------------
.............................................................................................................................................................TGCCCAGGCCAGAGTGCAGTAT....................................................................... 221.000.00----------------------------------1.00-------
...................................ATTAAGTATTTGGAGAAAT.................................................................................................................................................................................................... 191.000.00-------------------------------------1.00----
............................................................................................................................................................................GCAGTGGTGTGGTTTTATA........................................................... 191.000.00----------1.00-------------------------------
.................................................................................................................................................................................................................................TCTCCTGCCTCAGCTTCCCAGCC.. 231.000.00-1.00----------------------------------------
...................................................................................................................................................................................TGTGGTTTTGGCTCACTGCAACCTCTGTCAC........................................ 311.000.00---------1.00--------------------------------
.................................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT.................. 231.000.00----------------------1.00-------------------
...........................................................................................................................................................................................................CTGCCTCCCGGGTTCAAGTGATTCTCCTGCCGGTG............ 351.000.00-----------------1.00------------------------
..................................................................................................................................................................................................CTGCAACCTCTGCCTCCCGGGTTCAA.............................. 261.000.00---------------------------------1.00--------
..................................................................................................................................................................................................................................CTCCTGCCTCAGCTTCCCACACC. 231.000.00--1.00---------------------------------------
............................................................................................................TTTATTTATTTATTTATTTATTTATTTTGCACG............................................................................................................. 331.000.001.00-----------------------------------------
.......................................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGGCGG......................... 261.000.00-1.00----------------------------------------
................................................................................................................................................................................................................................TTCTCCTGCCTCAGCTTCCCAGAG.. 241.000.00--1.00---------------------------------------
................................................................................................................................................................................................................................TTGGGAAGCTGAGGCAGGAGAA.... 2201.001.00---------------1.00--------------------------
.......................................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAA............................. 221.000.00---------------------------------------1.00--
................................................................................................................................................................................................................................TTCTCCTGCCTCAGCTTCCCAAGTCTT 271.000.00--1.00---------------------------------------
..............................................................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCTGGGAC.............. 301.000.00------------1.00-----------------------------
..............................................................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCA................... 251.000.00-----------1.00------------------------------
...................................................................................................................................................................GGCCAGAGTGCAGTGGTGGGGC................................................................. 221.000.00--1.00---------------------------------------
..............ATAGACTACAATCCATCC.......................................................................................................................................................................................................................... 181.000.00-------1.00----------------------------------
............................................................................................................................................................................................................................GTGATTCTCCTGCCTCAGCTTCCCAACCT. 291.000.00--1.00---------------------------------------
....................................................................................................................................................................................................................................CCTGCCTCAGCTTCCCAAGTGGAG 241.000.00--1.00---------------------------------------