ID: uc002sjs.2_intron_0_0_chr2_74056124_f.5p
GENE: (1)
chr2:74056074-74056323+


(4)
B-CELL 		(5)
BREAST 		(25)
CELL-LINE 		(5)
CERVIX 		(4)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCGCCGGATGTGACGTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAAGGTGGGGAAGGGTCCCGGGAACGTGGTGGGGCAGGGCCTCCGAGCGTGGTTGGACTTTGAAGGGGATCGGCCGCCGTGAGTGTGGGGCCTGCAGCCTACTCTCCCCGAGTCCCCTGCCCGGCCTGCCTCGCTCGAGGCACCCGACGGCTTCTGTCTCCGCGGGCTGGCGCCTGACCAGCCAGGCCCAGCGGTTCCCCGCCT
.....................................................((((....))))....((((..((((((...))).))).))))((((((.(((.....))).)))))).................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
..................................................................................................TTGGACTTTGAAGGGGATC.....................................................................................................................................1916.006.006.00----------------------------------------------------------------
.............CGTTTCCGGAACCTCCGGG..........................................................................................................................................................................................................................1914.004.004.00----------------------------------------------------------------
...................................................TGGGGAAGGGTCCCGGGA.....................................................................................................................................................................................1814.004.00---4.00-------------------------------------------------------------
...................................................................................................TGGACTTTGAAGGGGATCGG...................................................................................................................................2013.003.00--2.00--------------------------------------1.00-----------------------
.................................................................................................GTTGGACTTTGAAGGGGATC.....................................................................................................................................2013.003.00-2.00-------------------1.00-------------------------------------------
..................................................................................................................ATCGGCCGCCGTGAGTGTG.....................................................................................................................1913.003.00------3.00----------------------------------------------------------
...............................................................................................TGGTTGGACTTTGAAGGGGATCGGC..................................................................................................................................2512.002.00--------------------1.00---------------------------1.00----------------
..............GTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAAG........................................................................................................................................................................................................3612.002.00------------------------------------1.00---------------------1.00------
.......................................................................................................................................................................................................................GCGCCTGACCAGCCAGGCCCAGCGGTT........2712.002.00-----2.00-----------------------------------------------------------
.............................GGGTGTCATCCGCGGGGAAAG........................................................................................................................................................................................................2112.002.00--------------1.00------------------------------------1.00-------------
................................................................CGGGAACGTGGTGGGGCAGGGCCTCCG...............................................................................................................................................................2712.002.00-2.00---------------------------------------------------------------
..........................................................................................................................CCGTGAGTGTGGGGCGC...............................................................................................................172.000.00--------1.001.00-------------------------------------------------------
..............................................................CCCGGGAACGTGGTGGGGC.........................................................................................................................................................................1912.002.00--2.00--------------------------------------------------------------
.............................................................TCCCGGGAACGTGGTGGGGC.........................................................................................................................................................................2012.002.002.00----------------------------------------------------------------
........................CCTCCGGGTGTCATCCGCGGGGAAAGGTGG....................................................................................................................................................................................................3012.002.00-2.00---------------------------------------------------------------
..........................................................GGGTCCCGGGAACGTGGTGGGGCAGG......................................................................................................................................................................2612.002.00-----------------------------1.00-----1.00-----------------------------
........................................................................................CCGAGCGTGGTTGGACTTTGAAG...........................................................................................................................................2312.002.00-2.00---------------------------------------------------------------
...............................................................................................TGGTTGGACTTTGAAGG..........................................................................................................................................1732.002.002.00----------------------------------------------------------------
...............................................................CCGGGAACGTGGTGGGGCAGGGCA...................................................................................................................................................................242.000.00-----------1.00-------------------------------------1.00---------------
............................................................................GGGGCAGGGCCTCCGAGCGTG.........................................................................................................................................................2112.002.00----2.00------------------------------------------------------------
..................................................................................................TTGGACTTTGAAGGGGATCGG...................................................................................................................................2111.001.00-------1.00---------------------------------------------------------
.........................................CGGGGAAAGGTGGGGAAGGGTC...........................................................................................................................................................................................2211.001.00------------------------------1.00----------------------------------
.........................................................................GGTGGGGCAGGGCCTCCGAGCGT..........................................................................................................................................................2311.001.00--------1.00--------------------------------------------------------
.............................................................................................................................................................................................................CCGCGGGCTGGCGCCGGC...........................181.000.00------------1.00----------------------------------------------------
.........................................................................................................................GCCGTGAGTGTGGGGCCTGCAGC..........................................................................................................2311.001.00----------1.00------------------------------------------------------
.......................................................................................TCCGAGCGTGGTTGGACTT................................................................................................................................................1911.001.00--------------------------1.00--------------------------------------
................................................................CGGGAACGTGGTGGGGCAGGGC....................................................................................................................................................................2211.001.00------------------1.00----------------------------------------------
................................................................CGGGAACGTGGTGGGGCAGGGCAA..................................................................................................................................................................2411.001.00-------------------1.00---------------------------------------------
.........................................CGGGGAAAGGTGGGGAAGGGTCC..........................................................................................................................................................................................2311.001.00--------------------------------1.00--------------------------------
..............................................................CCCGGGAACGTGGTGGGGCAGG......................................................................................................................................................................2211.001.00------------1.00----------------------------------------------------
...............................................................................................TGGTTGGACTTTGAAGT..........................................................................................................................................171.000.001.00----------------------------------------------------------------
.....................GAACCTCCGGGTGTCATCCGCGGGGAA..........................................................................................................................................................................................................2711.001.00--------------------------------------1.00--------------------------
.........................................................................GGTGGGGCAGGGCCTCCGAGCGTGGAA......................................................................................................................................................271.000.00----------------------------------1.00------------------------------
........................................GCGGGGAAAGGTGGGGAAGGGT............................................................................................................................................................................................2211.001.00-------------------------------------------1.00---------------------
......................................................GGAAGGGTCCCGGGAACGTG................................................................................................................................................................................2011.001.00---------1.00-------------------------------------------------------
.............................................................................................CGTGGTTGGACTTTGAAGGGGATCGGC..................................................................................................................................2711.001.00--------------------------------------------------------1.00--------
..GCCGGATGTGACGTTTC.......................................................................................................................................................................................................................................1711.001.00-----------------1.00-----------------------------------------------
........................................................AAGGGTCCCGGGAACGTG................................................................................................................................................................................1811.001.00---------------------------------------1.00-------------------------
...............................................AAGGTGGGGAAGGGTCCC.........................................................................................................................................................................................1811.001.00----------------------------------------------------1.00------------
..................................TCATCCGCGGGGAAAGAAA.....................................................................................................................................................................................................191.000.00----------------------1.00------------------------------------------
..............................GGTGTCATCCGCGGGGA...........................................................................................................................................................................................................1711.001.00----------------------------------------------1.00------------------
............ACGTTTCCGGAACCTCCGGGTGTCAT....................................................................................................................................................................................................................2611.001.00---------------------------1.00-------------------------------------
...................................................................................................TGGACTTTGAAGGGGCCA.....................................................................................................................................181.000.00-------------------------------1.00---------------------------------
...............................................................CCGGGAACGTGGTGGGGC.........................................................................................................................................................................1811.001.00-------------------------------------1.00---------------------------
................................................................CGGGAACGTGGTGGGGT.........................................................................................................................................................................171.000.00----------------1.00------------------------------------------------
................................................................CGGGAACGTGGTGGGGCAG.......................................................................................................................................................................1911.001.00-1.00---------------------------------------------------------------
.................................................................................................GTTGGACTTTGAAGGGGATCGG...................................................................................................................................2211.001.00------------------------------------------1.00----------------------
..............................................................CCCGGGAACGTGGTGGGG..........................................................................................................................................................................1811.001.001.00----------------------------------------------------------------
..................................................................................................TTGGACTTTGAAGGGGAT......................................................................................................................................1811.001.00--1.00--------------------------------------------------------------
............................................................................................................................GTGAGTGTGGGGCCTATA............................................................................................................181.000.00-1.00---------------------------------------------------------------
..................................................................................................................ATCGGCCGCCGTGAGTGT......................................................................................................................1811.001.00-------------1.00---------------------------------------------------
.................................................................................................GTTGGACTTTGAAGGGGAT......................................................................................................................................1911.001.00----1.00------------------------------------------------------------
................................................................CGGGAACGTGGTGGGGCAGG......................................................................................................................................................................2011.001.00----------------------------1.00------------------------------------
...............................................................CCGGGAACGTGGTGGGGCAGGG.....................................................................................................................................................................2211.001.00--------------------------------------------1.00--------------------
...............................................................CCGGGAACGTGGTGGGT..........................................................................................................................................................................171.000.00-----1.00-----------------------------------------------------------
........................................................AAGGGTCCCGGGAACGTGGTGGGGCAGGGC....................................................................................................................................................................3011.001.00----------1.00------------------------------------------------------
..............................................................CCCGGGAACGTGGTGGGGCAGGG.....................................................................................................................................................................2311.001.00---------------------------------------------------------1.00-------
...........................................................................................AGCGTGGTTGGACTTTGAAG...........................................................................................................................................2011.001.00---------------------------------------------1.00-------------------
.........................................................................................................................GCCGTGAGTGTGGGGC.................................................................................................................1611.001.00---------------1.00-------------------------------------------------
..GCCGGATGTGACGTTTCC......................................................................................................................................................................................................................................1811.001.00------------------------1.00----------------------------------------
............................................................................................................AAGGGGATCGGCCGCCGTGAGTGT......................................................................................................................2411.001.00--------------------------------------------------1.00--------------
.........................................................................................................................................................................................................GTCTCCGCGGGCTGGCGC...............................1811.001.00-----------------------------------------------------1.00-----------
..................................................................................................TTGGACTTTGAAGGGGCTC.....................................................................................................................................191.000.001.00----------------------------------------------------------------
...........................................................................TGGGGCAGGGCCTCCGAGCGTGGCTGG....................................................................................................................................................271.000.00----------------------------------------1.00------------------------
......................................................................................................ACTTTGAAGGGGATCGGCC.................................................................................................................................1911.001.00-------1.00---------------------------------------------------------
.................................................................................................................................................................................CGCTCGAGGCACCCGACGGCTT...................................................2211.001.00-------------1.00---------------------------------------------------
...................................................................GAACGTGGTGGGGCAGG......................................................................................................................................................................1720.500.50-----------------------------------------------------------0.50-----
.........................................CGGGGAAAGGTGGGGAAG...............................................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50---
...................CGGAACCTCCGGGTG........................................................................................................................................................................................................................1520.500.50------------------------------------------------------------0.50----
.........................................................AGGGTCCCGGGAACG..................................................................................................................................................................................1530.330.33---------------------------------------------------------------0.33-
..........................................GGGGAAAGGTGGGGAAGG..............................................................................................................................................................................................1860.170.17----------------------------------------------------------------0.17

Antisense strand
GCGCCGGATGTGACGTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAAGGTGGGGAAGGGTCCCGGGAACGTGGTGGGGCAGGGCCTCCGAGCGTGGTTGGACTTTGAAGGGGATCGGCCGCCGTGAGTGTGGGGCCTGCAGCCTACTCTCCCCGAGTCCCCTGCCCGGCCTGCCTCGCTCGAGGCACCCGACGGCTTCTGTCTCCGCGGGCTGGCGCCTGACCAGCCAGGCCCAGCGGTTCCCCGCCT
.....................................................((((....))))....((((..((((((...))).))).))))((((((.(((.....))).)))))).................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
..........................................................................................................................................................................................................................CCGCTGGGCCTGGCTGGTCAGG.......... 2211.001.00-----------1.00-----------------------------------------------------
..................................................................................................................................................................................................CCCGCGGAGACAGAAGCC...................................... 1811.001.00-------------------------------------------------------1.00---------
.........................................CGGGGAAAGGTGGGGGCCT.............................................................................................................................................................................................. 191.000.00-------------------------1.00---------------------------------------
..................................................................................................................................................................CTGCCCGGCCTGCCTTGAC..................................................................... 191.000.00--------------1.00--------------------------------------------------
........................................GCGGGGAAAGGTGGGGCCT............................................................................................................................................................................................... 191.000.00---------------------------------1.00-------------------------------
...............................................................................................................................................CAGGGGACTCGGGGAGAGTAGG..................................................................................... 2211.001.00-----------------------------------------------1.00-----------------
.........................................................................................................................................................................TCGGGTGCCTCGAGCGAGGCAGGC......................................................... 2411.001.00-----------------------1.00-----------------------------------------
......................................................................................................................................................................................................GCTGGTCAGGCGCCAGCCCGCGGAGACAGA...................... 3011.001.00------------------------------------------------------1.00----------
...............................................................................................................................................................AGGCAGGCCGGGCAGGGG......................................................................... 1830.330.33--------------------------------------------------------------0.33--
..............................................................................................................................................................CAGGCCGGGCAGGGGA............................................................................ 1650.200.20---------------0.20-------------------------------------------------