ID: uc002sgh.2_intron_8_0_chr2_70410068_r.5p
GENE: (1)
chr2:70417905-70418154-


(11)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(25)
CELL-LINE 		(10)
CERVIX 		(6)
HEART 		(2)
HELA 		(5)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(28)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AACAGTTTGGCCCCGTTTGTAAAAGGCCGCGGCAGGCGAAGAGAGAAGAGGTGAGGGCGGTCGTCAGCTAAGGGCCCCGGGGCTCGCGGGGGGTGCGCAGGGCAGGTAAGGGGGTAGTGCTGAGCAAGGACCGGGGCGGCGGTGGGGCAGGGGTGTAGAGCTCGGGTTCCCAGCGGAAAGCATGTCCAAGGAGCGGCTGCCGGCGAGGTGATGCTTCTGCCTGGGCCTACTTGGGACCGGAAGTGAGCGC
..................................................................((((....((((...(((((((.......))).))))......)))).))))....................................................................................................................................
..................................................................67....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		GSM532890(GSM532890)
G576T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
.......................................................................GGGCCCCGGGGCTCGCGA.................................................................................................................................................................1818.006.004.00-----1.00--1.00-----1.00-------------1.00-----------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCG..................................................................................................................................................................1716.006.002.00-----2.00--1.00----------------------------1.00--------------------------------------------------------------------
........................................................................GGCCCCGGGGCTCGCGA.................................................................................................................................................................1724.000.503.00----------------------------1.00-----------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCGC.................................................................................................................................................................1813.006.001.00--------1.00-------------------------------------------------------1.00-----------------------------------------
...................................GCGAAGAGAGAAGAGGTG.....................................................................................................................................................................................................1813.003.00-------------------------1.00-----1.00--------------------1.00------------------------------------------------------
...................................GCGAAGAGAGAAGAGGTGAG...................................................................................................................................................................................................2012.002.00--------1.00----------------------------------------------------------------------------1.00---------------------
..............................................................GTCAGCTAAGGGCCCCGG..........................................................................................................................................................................1812.002.00-------2.00---------------------------------------------------------------------------------------------------
.....................................................AGGGCGGTCGTCAGCTAA...................................................................................................................................................................................1812.002.00----------------------------------------------------------------1.00--------------------------1.00---------------
........................................................................GGCCCCGGGGCTCGCGAGGC..............................................................................................................................................................2022.000.50--1.00-----------------1.00--------------------------------------------------------------------------------------
..................................................................................................AGGGCAGGTAAGGGGGTAG.....................................................................................................................................1912.002.00------------------------------2.00----------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCGAG................................................................................................................................................................1912.006.001.00----------------------------------1.00-----------------------------------------------------------------------
...............................GCAGGCGAAGAGAGAAGAGG.......................................................................................................................................................................................................2012.002.00---1.001.00------------------------------------------------------------------------------------------------------
............................GCGGCAGGCGAAGAGAGAA...........................................................................................................................................................................................................1912.002.00-----------------2.00-----------------------------------------------------------------------------------------
.....................................................................................................GCAGGTAAGGGGGTAGTG...................................................................................................................................1812.002.00----------------------------1.00--------------------------------------------1.00---------------------------------
............................................................................................................................................................................GCGGAAAGCATGTCCAAGGAGCGG......................................................2412.002.00-----------------------2.00-----------------------------------------------------------------------------------
.................................AGGCGAAGAGAGAAGAGGT......................................................................................................................................................................................................1912.002.00------------------2.00----------------------------------------------------------------------------------------
.................................AGGCGAAGAGAGAAGAGGTGA....................................................................................................................................................................................................2112.002.00----1.00-------------------1.00----------------------------------------------------------------------------------
.......................................................................................................AGGTAAGGGGGTAGTGCTGAGACT...........................................................................................................................242.000.00---------------------------2.00-------------------------------------------------------------------------------
........................................................................GGCCCCGGGGCTCGCGAGG...............................................................................................................................................................1922.000.50--2.00--------------------------------------------------------------------------------------------------------
..............................................................................GGGGCTCGCGGGGGGTGGGGC.......................................................................................................................................................211.000.00------------------------------------------------------------1.00----------------------------------------------
.....................................................................................................GCAGGTAAGGGGGTAGTGCTG................................................................................................................................2111.001.00---------------------------------------------------------------1.00-------------------------------------------
.................................AGGCGAAGAGAGAAGAG........................................................................................................................................................................................................1711.001.00---------------------------------------------------1.00-------------------------------------------------------
.................................................................................................................GTAGTGCTGAGCAAGGAC.......................................................................................................................1811.001.00-----------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................GCAGGGGTGTAGAGCTCTG.....................................................................................191.000.00----------1.00------------------------------------------------------------------------------------------------
.....................................GAAGAGAGAAGAGGTGAGGGCGGTCGTCAGCT.....................................................................................................................................................................................3211.001.00--------------1.00--------------------------------------------------------------------------------------------
.........................................AGAGAAGAGGTGAGGGCGGTCGTCAGC......................................................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------1.00-----------------------
.........................................................CGGTCGTCAGCTAAGGGA...............................................................................................................................................................................181.000.00---------------------1.00-------------------------------------------------------------------------------------
..................................GGCGAAGAGAGAAGAGGTG.....................................................................................................................................................................................................1911.001.00-----1.00-----------------------------------------------------------------------------------------------------
.................................AGGCGAAGAGAGAAGAGGTG.....................................................................................................................................................................................................2011.001.00------------------------1.00----------------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCGAT................................................................................................................................................................1911.006.001.00----------------------------------------------------------------------------------------------------------
................................................................................................................GGTAGTGCTGAGCAAGGACCGG....................................................................................................................2211.001.00----------------------------------------------------------------------------------1.00------------------------
................................CAGGCGAAGAGAGAAG..........................................................................................................................................................................................................1611.001.00--------------------------1.00--------------------------------------------------------------------------------
...................................................................................................................................CGGGGCGGCGGTGGGGCAGGGGAAAA.............................................................................................261.000.00-----------------------------------------------------1.00-----------------------------------------------------
......................................................................................................................GCTGAGCAAGGACCGGGGCGGCGG............................................................................................................2411.001.00----1.00------------------------------------------------------------------------------------------------------
.............................................................................................................GGGGGTAGTGCTGAGCAAGG.........................................................................................................................2011.001.00-----------1.00-----------------------------------------------------------------------------------------------
....................................................GAGGGCGGTCGTCAGCTAAGGGC...............................................................................................................................................................................2311.001.00------------------------------------------------1.00----------------------------------------------------------
..............................................AGAGGTGAGGGCGGTCGT..........................................................................................................................................................................................1811.001.00-------------------------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................GCGGAAAGCATGTCCAAGGAG.........................................................2111.001.00-----------------------------------------------------------------------1.00-----------------------------------
..........................................GAGAAGAGGTGAGGGCGGTCG...........................................................................................................................................................................................2111.001.00----1.00------------------------------------------------------------------------------------------------------
........................................................................................................................................................GTGTAGAGCTCGGGTTCCCAGC............................................................................2211.001.00------------------------------------------------------------------------------1.00----------------------------
.......................................................................GGGCCCCGGGGCTCGCGAGGC..............................................................................................................................................................2111.006.00--1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................CGGGGCGGCGGTGGGGTGGC...................................................................................................201.000.00----------------------------------------------------------------------------------------1.00------------------
........................................................................GGCCCCGGGGCTCGCGC.................................................................................................................................................................1721.000.501.00----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................CAAGGAGCGGCTGCCCGTA.............................................191.000.00---------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................ACCGGGGCGGCGGTGGG........................................................................................................1711.001.00---------------------------------------------------------------------------------1.00-------------------------
...........................................................................CCCGGGGCTCGCGGGTG..............................................................................................................................................................171.000.00------1.00----------------------------------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCGAGG...............................................................................................................................................................2011.006.00--------------------------------------------1.00--------------------------------------------------------------
.........................................AGAGAAGAGGTGAGGGCGGT.............................................................................................................................................................................................2011.001.00-------------------------------------------------------------------1.00---------------------------------------
................................CAGGCGAAGAGAGAAGAGGTGA....................................................................................................................................................................................................2211.001.00----------------------------1.00------------------------------------------------------------------------------
..................................GGCGAAGAGAGAAGAGGTGAGGGCGGT.............................................................................................................................................................................................2711.001.00-----1.00-----------------------------------------------------------------------------------------------------
.........................GCCGCGGCAGGCGAAGAGAGA............................................................................................................................................................................................................2111.001.00----------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................GCGGAAAGCATGTCCAAGGAGCGGCT....................................................2611.001.00----------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................GAGCAAGGACCGGGGCGG...............................................................................................................1811.001.00---------------------------------------------------------------------------1.00-------------------------------
...............................................GAGGTGAGGGCGGTCGTCAG.......................................................................................................................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------------------------
.................................AGGCGAAGAGAGAAGAGGTGAGG..................................................................................................................................................................................................2311.001.00--------------------------------------------------------1.00--------------------------------------------------
.........................................AGAGAAGAGGTGAGGGCG...............................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------1.00--------------------------------
.................TGTAAAAGGCCGCGGCAGGATGA..................................................................................................................................................................................................................231.000.00------------------------------------------------------------------------1.00----------------------------------
..............................................................................................................................................TGGGGCAGGGGTGTAGAGCTCGG.....................................................................................2311.001.00----------1.00------------------------------------------------------------------------------------------------
................................CAGGCGAAGAGAGAAGAG........................................................................................................................................................................................................1811.001.00----1.00------------------------------------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCGG.................................................................................................................................................................1811.001.00--1.00--------------------------------------------------------------------------------------------------------
...........................................................GTCGTCAGCTAAGGGCCCC............................................................................................................................................................................1911.001.00--------------------------------1.00--------------------------------------------------------------------------
.........................GCCGCGGCAGGCGAACAA...............................................................................................................................................................................................................181.000.00-------------------1.00---------------------------------------------------------------------------------------
................................................AGGTGAGGGCGGTCGTCAG.......................................................................................................................................................................................1911.001.00---------------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................CTCGGGTTCCCAGCGGAAAGCAT...................................................................2311.001.00--------------------------------------------------------------------1.00--------------------------------------
................................................................................................................................................................CTCGGGTTCCCAGCGGAA........................................................................1811.001.00-------------------------------------------1.00---------------------------------------------------------------
................................................AGGTGAGGGCGGTCGTCA........................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00----------------
.....................................................................................................................................GGGCGGCGGTGGGGCCGAG..................................................................................................191.000.001.00----------------------------------------------------------------------------------------------------------
............................................................TCGTCAGCTAAGGGC...............................................................................................................................................................................1511.001.00-----1.00-----------------------------------------------------------------------------------------------------
.......................AGGCCGCGGCAGGCGAAGAG...............................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------1.00-----------------
.............................CGGCAGGCGAAGAGAGAAGAGGTGAGGG.................................................................................................................................................................................................2811.001.00--------------1.00--------------------------------------------------------------------------------------------
.................TGTAAAAGGCCGCGGCAGGAAT...................................................................................................................................................................................................................221.000.00-------------------------------------------------1.00---------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCTA.................................................................................................................................................................181.000.00---------1.00-------------------------------------------------------------------------------------------------
..............................GGCAGGCGAAGAGAGAAGAG........................................................................................................................................................................................................2011.001.00------------1.00----------------------------------------------------------------------------------------------
................................................................CAGCTAAGGGCCCCGGGG........................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------1.00-------------------
................................................AGGTGAGGGCGGTCGTC.........................................................................................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00---------------------------
...................................................................................................................................CGGGGCGGCGGTGGGGCAG....................................................................................................1911.001.00-------------------1.00---------------------------------------------------------------------------------------
...........................................AGAAGAGGTGAGGGCGGTCGTCAGCC.....................................................................................................................................................................................261.000.00---------------------------------------------------------------------1.00-------------------------------------
......................................................GGGCGGTCGTCAGCTAAGG.................................................................................................................................................................................1911.001.00----------------------------------------1.00------------------------------------------------------------------
..................................................................................................................................CCGGGGCGGCGGTGGGAGAG....................................................................................................201.000.00--------------------------------------------------------------------------------1.00--------------------------
....................................CGAAGAGAGAAGAGGTG.....................................................................................................................................................................................................1711.001.00-----------------------------------------------1.00-----------------------------------------------------------
...................................................................................................................AGTGCTGAGCAAGGACCGGGCGGC...............................................................................................................241.000.00-------------1.00---------------------------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCGCAGG................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------------------
.......................................................................GGGCCCCGGGGCTCG....................................................................................................................................................................1570.570.57--0.29------------------------------------------------------------------------------------------------0.14-----0.14-
........................................................................GGCCCCGGGGCTCGC...................................................................................................................................................................1560.500.50-----0.17---------------------------------------------------------------------------------------------0.17----0.17--
........................................................................GGCCCCGGGGCTCGCG..................................................................................................................................................................1620.500.50------0.50----------------------------------------------------------------------------------------------------
......................................AAGAGAGAAGAGGTGAGG..................................................................................................................................................................................................1840.500.50----------------------------------------------------------------------------------------------0.50------------
................................................................................................................................................................................................GCGGCTGCCGGCGAG...........................................1520.500.50-------------------------------0.50---------------------------------------------------------------------------
....................................................................................................................................GGGGCGGCGGTGGGGC......................................................................................................1650.400.40--0.20--------0.20-----------------------------------------------------------------------------------------------
........................................................................................................................................CGGCGGTGGGGCAGGGG.................................................................................................1730.330.33--------------------------------------------------------------------------------------------------0.33--------
.........................................................................GCCCCGGGGCTCGCG..................................................................................................................................................................1560.330.33------0.17-------------------------------0.17--------------------------------------------------------------------
.........................................................................GCCCCGGGGCTCGCGAGGC..............................................................................................................................................................1960.330.33-----------------------------------0.17-------------------------------------------------------------------0.17---
.........................................................................GCCCCGGGGCTCGCGCGG...............................................................................................................................................................1860.330.33---------------------------------0.170.17------------------------------------------------------------------------
.........................................................................GCCCCGGGGCTCGCGA.................................................................................................................................................................1660.330.33-------0.17-----------------------------0.17---------------------------------------------------------------------
.......................................AGAGAGAAGAGGTGAGGG.................................................................................................................................................................................................1840.250.25-----------------------------------------------------------------------------------------------------0.25-----
............................................GAAGAGGTGAGGGCGG..............................................................................................................................................................................................1650.200.20-----------------0.20-----------------------------------------------------------------------------------------
.........................................................................GCCCCGGGGCTCGCGAGGA..............................................................................................................................................................1960.170.33------------------------------------------------------------------------------------------------------0.17----
.........................................................................GCCCCGGGGCTCGCGAGG...............................................................................................................................................................1860.170.33------------------------------------0.17----------------------------------------------------------------------
..........................................................................CCCCGGGGCTCGCGG.................................................................................................................................................................1580.120.12------0.12----------------------------------------------------------------------------------------------------
........................................GAGAGAAGAGGTGAGGG.................................................................................................................................................................................................1780.120.12----------------------------------------------------------------------------------------------------------0.12
..................................................................................................................................CCGGGGCGGCGGTGG.........................................................................................................1590.110.11------------------0.11----------------------------------------------------------------------------------------

Antisense strand
AACAGTTTGGCCCCGTTTGTAAAAGGCCGCGGCAGGCGAAGAGAGAAGAGGTGAGGGCGGTCGTCAGCTAAGGGCCCCGGGGCTCGCGGGGGGTGCGCAGGGCAGGTAAGGGGGTAGTGCTGAGCAAGGACCGGGGCGGCGGTGGGGCAGGGGTGTAGAGCTCGGGTTCCCAGCGGAAAGCATGTCCAAGGAGCGGCTGCCGGCGAGGTGATGCTTCTGCCTGGGCCTACTTGGGACCGGAAGTGAGCGC
..................................................................((((....((((...(((((((.......))).))))......)))).))))....................................................................................................................................
..................................................................67....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		GSM532890(GSM532890)
G576T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
..................................................................................................................................................................................................................GTAGGCCCAGGCAGAAGCAT.................... 20110.0010.00-8.00------------------------------------------------1.00---1.00----------------------------------------------------
.......................................................................................................................................................................................................AAGCATCACCTCGCCGG.................................. 1714.004.00-4.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................AAGTAGGCCCAGGCAGAAG.................. 1913.003.00---------------------------------------1.00-----------------1.00----------------------------------1.00--------------
...................................................................................................................................................................................................................GTAGGCCCAGGCAGAAGCA.................... 1913.003.00---3.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................GCCGCTCCTTGGACATGC..................................................... 1813.003.00----------------------2.00------------------1.00-----------------------------------------------------------------
...................................................................................................................................................................................................................AAGTAGGCCCAGGCAGAAGCA.................. 2112.002.00------------2.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................CAGAAGCATCACCTCGCCGG............................... 2012.002.00---2.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CCAGGCAGAAGCATCACCTCG.......................... 2112.002.00----------------2.00------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGTAGGCCCAGGCAGAAGCATCA.................. 2412.002.00-----1.00------------------------------------------------------------------------------1.00----------------------
......................................................................................................................................................................................................................CGGTCCCAAGTAGGCCCAGGCAGAA........... 2512.002.00---------------------------------1.001.00------------------------------------------------------------------------
...............................................................................................................................................................................................................CCAAGTAGGCCCAGGCAGAAGCATCAC................ 2712.002.00-------2.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GTAGGCCCAGGCAGAAGCATCAC.................... 2312.002.00---2.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCAGCCGCTCCTTGGACATG.................................................. 2011.001.00-------------------------------------------------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................CTTCTGCCTGGGCCTACA................... 181.000.00--------1.00--------------------------------------------------------------------------------------------------
....................................CGAAGAGAGAAGAGGATC.................................................................................................................................................................................................... 181.000.00--------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................................CGGTCCCAAGTAGGCCCAGGCAG........... 2311.001.00------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................CAGAAGCATCACCTCGCCGGC............................... 2111.001.00----------------------------------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................................AAGTAGGCCCAGGCAGAA.................. 1811.001.00--------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CACTTCCGGTCCCAAGTAGGCCCAGGCAGAAGC..... 3311.001.00--------------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................CCCAGGCAGAAGCATCACCT......................... 2011.001.00---------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GCTTCTGCCTGGGCCTGT.................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------
.........................................................................GCCCCGGGGCTCGCGGGGGGG............................................................................................................................................................ 211.000.00-------------1.00---------------------------------------------------------------------------------------------
....................................................................TAAGGGCCCCGGGGCTAGA................................................................................................................................................................... 191.000.00-----------------------------------------------------------1.00-----------------------------------------------
.........................................................................GCCCCGGGGCTCGCGGGGG.............................................................................................................................................................. 191.000.00--1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................ATGCTTCTGCCTGGGTC....................... 171.000.00----------1.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGGCCCAGGCAGAAGCAT...................... 1841.001.00-------0.50--------0.25-----------------------------------------------------------------------------------0.25------
..................................................................................................................................................................................................GAAGCATCACCTCGCCGGCAGCC................................. 2311.001.00-------------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................CAGGCAGAAGCATCACCTCG........................... 2011.001.00--------------------------------------------------------------------------------------1.00--------------------
..........................................................................CCCCGGGGCTCGCGGGGA.............................................................................................................................................................. 181.000.00-----------------------------------------------------------------------------1.00-----------------------------
....................................................................................................................GTGCTGAGCAAGGACCGGGGAC................................................................................................................ 221.000.00------------------------------------1.00----------------------------------------------------------------------
.........................................................................GCCCCGGGGCTCGCGTCG............................................................................................................................................................... 1861.000.00---------------------1.00-------------------------------------------------------------------------------------
..........................................................................CCCCGGGGCTCGCGGGGGGG............................................................................................................................................................ 201.000.00------------------------------------------------------------------1.00----------------------------------------
.......................................................................................................................................................................................................................CAAGTAGGCCCAGGCAGA................. 1811.001.00----------------------------------------------------------1.00------------------------------------------------
..................................................................................................................................................................................................................ATGCTTCTGCCTGGGTGT...................... 181.000.00-----------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................AAGCATCACCTCGCCGGCA.................................. 1911.001.00-------------------------------------------------------1.00---------------------------------------------------
.........................................................................CCCCGCGAGCCCCGGGGC............................................................................................................................................................... 1811.001.00-------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GTAGGCCCAGGCAGAAGCATCACCTCGC.................... 2811.001.00-----1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CAAGTAGGCCCAGGCAGAAGCA................. 2211.001.00----------------------------------------------1.00------------------------------------------------------------
......................................................................................................................................................................TTGGACATGCTTTCCGCTGGGAA............................................................. 2311.001.00--------1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................AGGACCGGGGCGGCGGCCCG........................................................................................................ 201.000.00--------------------------------------------------------------1.00--------------------------------------------
...............................................................................................................................................................CGCTGGGAACCCGAGC........................................................................... 1620.500.50------------------------------------------------------------------------------------------------0.50----------
................................................................................................................................................................................................................AGGCCCAGGCAGAAGCATCA...................... 2020.500.50----0.50------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TAGGCCCAGGCAGAAGCA..................... 1820.500.50-----------------------------------------------------------------------------------------------0.50-----------
................................................................................................................................................................................................................TAGGCCCAGGCAGAAGCATCA..................... 2120.500.50---------------------------------------------------------------------------------------------0.50-------------
.....................................................................................................................................................................CTTTCCGCTGGGAAC...................................................................... 1520.500.50--------------------------------0.50--------------------------------------------------------------------------
..........................CTTCGCCTGCCGCGG................................................................................................................................................................................................................. 1530.330.33-------------------------------------------------------------------------------------------------0.33---------
.................................................................................................................................................................................................................CCCAGGCAGAAGCATC......................... 1650.200.20-----------0.20-----------------------------------------------------------------------------------------------
...............................................................................................................................CCGCCGCCCCGGTCC............................................................................................................ 1570.140.14---------------------------------------0.14-------------------------------------------------------------------