ID: uc002sal.1_intron_1_0_chr2_61084056_r.5p
GENE: FLJ16341(1)
chr2:61108167-61108416-


(9)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(17)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GCTAGCAGCGTGAGAAGGCCGCTGGCTCCTGAGAAATCCCCCTCCTCCAGGTTGTTCTTCCGAGTGTGGTTTAAAGTTCAGGAGCGGGCGGGAGGGTGCGGATGACGTAGAGAGGGCCGGCCGCTGGGGAGCTTTTGGGGGCGCGCGGGGCCGACTCTCCCGGCCTGGGAGGGCGACGGCCGGGGTTTTCGAGAGGTGGTTCCCCCTCTTCCCGACTTCGCACATGCAAATCTCCACCCCCGCGCCAGCG
..................................................((((..(((((..((.((.(((........))).)).)).))))).((((.....))))........)))).................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................GATGACGTAGAGAGGGC.....................................................................................................................................1715.005.00---5.00-------------------------------------------------------------------
..............................................................................CAGGAGCGGGCGGGAGGGTG........................................................................................................................................................2013.003.00------------------------1.00------------------1.00----------1.00----------------
...................................................................................................GGATGACGTAGAGAGGGCAA...................................................................................................................................2013.003.003.00----------------------------------------------------------------------
...................................................................................................GGATGACGTAGAGAGGGC.....................................................................................................................................1813.003.00-------------1.00----------------------------1.00----------1.00-----------------
....................................................................................................GATGACGTAGAGAGGGCCGG..................................................................................................................................2012.002.00----------------1.00----------1.00-------------------------------------------
....................................................................................................GATGACGTAGAGAGGGCCGGCC................................................................................................................................2212.002.00--2.00--------------------------------------------------------------------
..................................................................................................CGGATGACGTAGAGAGGGCA....................................................................................................................................2012.001.002.00----------------------------------------------------------------------
.................................................................................................GCGGATGACGTAGAGAGGGC.....................................................................................................................................2012.002.00-----------------1.00----1.00------------------------------------------------
...........................................................................................................................................................TCTCCCGGCCTGGGAGGG.............................................................................1812.002.00----2.00------------------------------------------------------------------
.......................................................................................GCGGGAGGGTGCGGATGACGTAGAGA.........................................................................................................................................2612.002.00--------2.00--------------------------------------------------------------
...................................................................................GCGGGCGGGAGGGTGCGG.....................................................................................................................................................1822.002.00----------------0.500.50------------------------------------------------0.500.50---
................................................................................GGAGCGGGCGGGAGGTCC........................................................................................................................................................182.000.00-----------1.00---------1.00-------------------------------------------------
...................................................................................GCGGGCGGGAGGGTGCGGAA...................................................................................................................................................2011.001.00-------------------------------1.00---------------------------------------
.................................................................................GAGCGGGCGGGAGGGAGAG......................................................................................................................................................191.000.00-------------------------------------1.00---------------------------------
....................................................................................CGGGCGGGAGGGTGCGGATGACGTAGA...........................................................................................................................................2711.001.00--------------------------------------------------------1.00--------------
..................................................GTTGTTCTTCCGAGTGTGGTTT..................................................................................................................................................................................2211.001.00--------------1.00--------------------------------------------------------
..................................................................................................CGGATGACGTAGAGAGGG......................................................................................................................................1811.001.00-----------------------------------------------1.00-----------------------
................................................................................................TGCGGATGACGTAGAGAGGGCCG...................................................................................................................................2311.001.00----------------------------------------------1.00------------------------
.......................................................................................................GACGTAGAGAGGGCCGGCCGCTGG...........................................................................................................................2411.001.001.00----------------------------------------------------------------------
..............................................................................CAGGAGCGGGCGGGAGGGT.........................................................................................................................................................1911.001.00----------------------------------------------------------1.00------------
............................................................................................................................................................CTCCCGGCCTGGGAGGGCGAC.........................................................................2111.001.00----------------------------------1.00------------------------------------
.....................................................................................................ATGACGTAGAGAGGGCCGGCC................................................................................................................................2111.001.00---------------1.00-------------------------------------------------------
.................................................................................................GCGGATGACGTAGAG..........................................................................................................................................1511.001.00--------------------------1.00--------------------------------------------
..................................................................................................................................................................................GCCGGGGTTTTCGAGAGGT.....................................................1911.001.00-----------------------------1.00-----------------------------------------
...................................................................................GCGGGCGGGAGGGTGCGGA....................................................................................................................................................1911.001.00-------------------------1.00---------------------------------------------
.....................................................................................................ATGACGTAGAGAGGGCCGGCCGCTG............................................................................................................................2511.001.00--------------------------------1.00--------------------------------------
.............................................................................................GGGTGCGGATGACGTAGAGAGG.......................................................................................................................................2211.001.00--------------------------------------------1.00--------------------------
.................................................................................................................GGGCCGGCCGCTGGGGAGC......................................................................................................................1911.001.00-1.00---------------------------------------------------------------------
................................................................................................................................................................CGGCCTGGGAGGGCGACGG.......................................................................1911.001.00------------------------------1.00----------------------------------------
..............................................................................................................................................................CCCGGCCTGGGAGGGCGACG........................................................................2011.001.00-----------------------------------------------------------1.00-----------
..................................................................................................CGGATGACGTAGAGAGGGCCGG..................................................................................................................................2211.001.00----------------------------------------------------------------1.00------
..............................................................................................................................................................CCCGGCCTGGGAGGGCGAC.........................................................................1911.001.00-------------------1.00---------------------------------------------------
..................................................................................................CGGATGACGTAGAGAGGGC.....................................................................................................................................1911.001.00------------------1.00----------------------------------------------------
..........................................................................................................................................................................GGGCGACGGCCGGGGGCAT.............................................................191.000.00----------------------------1.00------------------------------------------
...........................................................CCGAGTGTGGTTTAAAT..............................................................................................................................................................................171.000.00-------------1.00---------------------------------------------------------
...................................................................................GCGGGCGGGAGGGTGCGGAT...................................................................................................................................................2011.001.00-------------------------------------------------1.00---------------------
.................................................................................................................GGGCCGGCCGCTGGGGCGC......................................................................................................................191.000.00-1.00---------------------------------------------------------------------
..........................................................................................................................GCTGGGGAGCTTTTGGAGGC............................................................................................................201.000.00---------------------------------------------------------1.00-------------
................................................................................GGAGCGGGCGGGAGGTC.........................................................................................................................................................171.000.00---------------------------------1.00-------------------------------------
......................................................................................................................................................CCGACTCTCCCGGCCTGGG.................................................................................1911.001.00------1.00----------------------------------------------------------------
................................................................................................................................................................CGGCCTGGGAGGGCGACGGC......................................................................2011.001.00----1.00------------------------------------------------------------------
............................................................................................................................................................CTCCCGGCCTGGGAGGGCGACGGC......................................................................2411.001.00--------------1.00--------------------------------------------------------
................................................................................GGAGCGGGCGGGAGGGAC........................................................................................................................................................181.000.00-----------1.00-----------------------------------------------------------
.............................................TCCAGGTTGTTCTTCCGAG..........................................................................................................................................................................................1911.001.00--------------------1.00--------------------------------------------------
...................................................................................GCGGGCGGGAGGGTGCCG.....................................................................................................................................................181.000.00------------------------------------------------------------1.00----------
...................................................................................GCGGGCGGGAGGGTGCG......................................................................................................................................................1720.500.50-----------------------------------------------------------------0.50-----
....................................................................................CGGGCGGGAGGGTGCGG.....................................................................................................................................................1720.500.50--------------------------------------------------------------------0.50--
....................................................................................................................................................................CTGGGAGGGCGACGG.......................................................................1540.250.25----------------------------------------------------------------------0.25

Antisense strand
GCTAGCAGCGTGAGAAGGCCGCTGGCTCCTGAGAAATCCCCCTCCTCCAGGTTGTTCTTCCGAGTGTGGTTTAAAGTTCAGGAGCGGGCGGGAGGGTGCGGATGACGTAGAGAGGGCCGGCCGCTGGGGAGCTTTTGGGGGCGCGCGGGGCCGACTCTCCCGGCCTGGGAGGGCGACGGCCGGGGTTTTCGAGAGGTGGTTCCCCCTCTTCCCGACTTCGCACATGCAAATCTCCACCCCCGCGCCAGCG
..................................................((((..(((((..((.((.(((........))).)).)).))))).((((.....))))........)))).................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..TAGCAGCGTGAGAAGCTG...................................................................................................................................................................................................................................... 183.000.00-----2.00--------------------------------------------------------1.00--------
..TAGCAGCGTGAGAAGGCTG..................................................................................................................................................................................................................................... 193.000.00-----1.00---1.00-----------------------------------1.00-------------------------
.................................................................................................................................................CCTCCCAGGCCGGGAGAGTCGGCCCCG.............................................................................. 2712.002.00------------2.00----------------------------------------------------------
...........................................................................................................................................................................................................GTGCGAAGTCGGGAAGAGGG........................... 2012.002.00-------2.00---------------------------------------------------------------
....................................................................................................................................................................................................GTCGGGAAGAGGGGGAACCA.................................. 2011.001.00-1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................GAAGTCGGGAAGAGGGGG............................... 1811.001.00-------------------------------------------------------1.00---------------
........................................CTCGGAAGAACAACCTGGAGGAGG.......................................................................................................................................................................................... 2411.001.00---------------1.00-------------------------------------------------------
.......................................................................................................................................................................................................AAGTCGGGAAGAGGGGGAA................................ 1911.001.00---------------------------------------------------------------1.00-------
..........................................................................................................................................................................................................................CGCGGGGGTGGAGATTTGCATGTGCG...... 2611.001.00--1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................CCCTCTTCCCGACTTCAAA............................ 191.000.00-------------------------------------------------------------1.00---------
......................................................................................................................................................................................................................GAGATTTGCATGTGCGAAGT................ 2011.001.00---------------------------------------------------1.00-------------------
....................................................................................................................................................................................................CGGGAAGAGGGGGAACCA.................................... 1811.001.00-1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................................GTGGAGATTTGCATGTGCGA............. 2011.001.00----------1.00------------------------------------------------------------
.....................................................................................................................................................CCTCCCAGGCCGGGAGAGTCGGC.............................................................................. 2311.001.00--1.00--------------------------------------------------------------------
..............................................CTCGGAAGAACAACCTGG.......................................................................................................................................................................................... 1811.001.00------1.00----------------------------------------------------------------
.....................................CTCGGAAGAACAACCTGGAGGAGGGGG.......................................................................................................................................................................................... 2711.001.00------------------------------------------------1.00----------------------
....................................AGAACAACCTGGAGGAGGGGGA................................................................................................................................................................................................ 2211.001.00----------------------------------------1.00------------------------------
...........................................................................................................................................................................................................GCGAAGTCGGGAAGAGGG............................. 1811.001.00--1.00--------------------------------------------------------------------
....................................CGGAAGAACAACCTGGAGGAGGGGGA............................................................................................................................................................................................ 2611.001.00-1.00---------------------------------------------------------------------
...................................................................................................................................................GGGCCGACTCTCCCGGCC..................................................................................... 181.000.00---------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................CGAAGTCGGGAAGAGGGG.............................. 1811.001.00--------------------------------------1.00--------------------------------
.......................................................................................................................................................................................................GAAGTCGGGAAGAGGGGGAA............................... 2011.001.00---------------------------------------1.00-------------------------------
.......................................................................................................GACGTAGAGAGGGCCGGCCGCTTTC.......................................................................................................................... 251.000.00----------------------------------------------------1.00------------------
........................................................................................................................................................................................CGGGAAGAGGGGGAACCACCTCTCGAAAAC.................................... 3011.001.00----------1.00------------------------------------------------------------
..................................................................................................................................................................................................................................CAAATCTCCACCCCCGCAAT.... 201.000.00------1.00----------------------------------------------------------------
..........................................................................................................................................................................................................ATGTGCGAAGTCGGGAAGAGGGG......................... 2311.001.00--------------------------------------------------1.00--------------------
................................................................................................................................................................................................................................TGCAAATCTCCACCCCCGCAAT.... 221.000.00-1.00---------------------------------------------------------------------
.................TTCTCAGGAGCCAGCGGC....................................................................................................................................................................................................................... 1811.001.00-----------------------1.00-----------------------------------------------
..............CTCAGGAGCCAGCGGCCTT......................................................................................................................................................................................................................... 1911.001.00------------------------------------1.00----------------------------------
...............................................................................................................................................................................................GAAGTCGGGAAGAGGGGGAACCACCTCT............................... 2811.001.00-----------------------------------------1.00-----------------------------
.................................................................................................................................................GCCGGGAGAGTCGGCCCCG...................................................................................... 1911.001.00-------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................CAAATCTCCACCCCCTAAG..... 191.000.00-----------------------------------1.00-----------------------------------
................................................................................CCCTCCCGCCCGCTCC.......................................................................................................................................................... 1650.400.40---------------------------------------------------------------------0.40-