ID: uc002saj.2_intron_8_0_chr2_61006911_f.3p
GENE: (9)
chr2:61008820-61009069+


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
OTHER 		(16)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCAGTATTTCCTTTGACTTTGACTATCAGACATATCCAACTTCAGAAATAAATGCAGTTGGGGAGGGAAAATGTACTTCTTAAACTTGAGGAAATGTAGTATTAAATTTATATTTCATATTCTTCAGACTTTTGGGGAAATGAAGTGAGAACAACTGAAATAGGAGAATAGATCAGTTATTCTGCTTCTAATTTCACAGGTAAATCCATCAGATAGGTATCATCTCATGCCCATAATCACCCCTGCCTA
.....................................................................................................................................((..((((((((((.((((.((((((..((......))..)))))).)))))))))..))))).))...................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189782SRR189785SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAACT.............................................................................................24117.0017.00-4.008.00--------1.00-------1.00--------1.00---------1.00------1.00-------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTGTT..........................................................................................26112.001.0012.00----------------------------------------------------
....................................................................................................................................TTGGGGAAATGAAGTGAGAACA................................................................................................2218.008.00-6.00----1.00----------------1.00-----------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGT.................................................2417.001.003.00---1.00--------1.00-------1.00-----1.00-------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACA...................................................2216.006.00----2.00-------------1.00-----------1.00-1.00---------------1.00----
....................................................................................................................................TTGGGGAAATGAAGTGAGAAC.................................................................................................2116.006.00-------2.00------1.002.00---------------------------------1.00---
.....................................................................................................................................TGGGGAAATGAAGTGAGAAC.................................................................................................2013.003.00--1.00----------------------1.00---------------------1.00-----
....................................................................................................TATTAAATTTATATTTCATATTCTTCAG..........................................................................................................................2813.003.00-----3.00-----------------------------------------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTGA...........................................................................................2313.003.00-------1.00------------1.00-------------------1.00------------
.......................................................................................................................................GGGAAATGAAGTGAGAACAACTG............................................................................................2313.003.00------1.00-----1.00-------------1.00--------------------------
..............................................................................................................................................................AAATAGGAGAATAGATCA..........................................................................1813.003.00--------1.00--------1.00--------------------------1.00--------
..................................................................................................................................................................................TATTCTGCTTCTAATTTCACAGT.................................................2312.001.00-----------------------------------1.00------1.00----------
.......................................................................................................................................GGGAAATGAAGTGAGAACAACTGAAA.........................................................................................2612.002.00----------2.00------------------------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAA..................................................2312.006.00----------------2.00------------------------------------
....................................................................................................................................TTGGGGAAATGAAGTGAGAACAACT.............................................................................................2512.002.00------1.00-------1.00--------------------------------------
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAA...............................................................................................2212.002.00---------1.00------------------------1.00------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGA.................................................2411.001.00-------------------------------------------1.00---------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTG............................................................................................2411.001.00-------------1.00---------------------------------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTG............................................................................................2211.001.00-----------1.00-----------------------------------------
.................................................TAAATGCAGTTGGGGTAT.......................................................................................................................................................................................181.000.00-------------------------------------1.00---------------
........................................................................................................................................GGAAATGAAGTGAGAACAACTGAAA.........................................................................................2511.001.00--------1.00--------------------------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGTAA...............................................2611.001.00-----------------------------------------1.00-----------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACTGA...........................................................................................2511.001.00----------------------------------------------1.00------
......................................................................................................................................GGGGAAATGAAGTGAGAACAACT.............................................................................................2311.001.00----------------------1.00------------------------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAGTT................................................2511.001.00---------------------------------------1.00-------------
.................................................................................................................................................................................TTATTCTGCTTCTAATTTCACAG..................................................2311.001.00----1.00------------------------------------------------
.........................................................GTTGGGGAGGGAAAA..................................................................................................................................................................................1501.001.00------------1.00----------------------------------------
....................................................................................................................................................................................................................GATAGGTATCATCTCATGCCC.................2111.001.00-----------------------------1.00-----------------------
..................................................................................................................................................................................TATTCTGCTTCTAATTTCACAG..................................................2211.001.00------------------------1.00----------------------------
......................................................................................................................................................AACAACTGAAATAGGGTA..................................................................................181.000.00-------------------------------1.00---------------------
.....................................................................................................................................TGGGGAAATGAAGTGAGAACAAC..............................................................................................2311.001.00------------------------------------1.00----------------
....................................................................................................................................................................................TTCTGCTTCTAATTTAG.....................................................171.000.00-----1.00-----------------------------------------------
...................................................................................................................................................GAGAACAACTGAAATAGGAGA..................................................................................2111.001.00---------------------------------1.00-------------------
........................................................................................GAGGAAATGTAGTATT..................................................................................................................................................1630.330.33---------------------------------------------------0.33-
...............................................................................................................................................................AATAGGAGAATAGATC...........................................................................1650.200.20----------------------------------------------------0.20

Antisense strand
TGCAGTATTTCCTTTGACTTTGACTATCAGACATATCCAACTTCAGAAATAAATGCAGTTGGGGAGGGAAAATGTACTTCTTAAACTTGAGGAAATGTAGTATTAAATTTATATTTCATATTCTTCAGACTTTTGGGGAAATGAAGTGAGAACAACTGAAATAGGAGAATAGATCAGTTATTCTGCTTCTAATTTCACAGGTAAATCCATCAGATAGGTATCATCTCATGCCCATAATCACCCCTGCCTA
.....................................................................................................................................((..((((((((((.((((.((((((..((......))..)))))).)))))))))..))))).))...................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189782SRR189785SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................ATATTCTTCAGACTTTTTGA................................................................................................................. 203.000.00---3.00-------------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTTG.................................................................................................................. 192.000.00---2.00-------------------------------------------------
.....................................................................AAATGTACTTCTTAAACGT.................................................................................................................................................................. 191.000.00--------------------------------------------------1.00--
.....................................................................................................................ATATTCTTCAGACTTTTG................................................................................................................... 181.000.00---------1.00-------------------------------------------
....................................................................................................................................................................................................................GATAGGTATCATCTCAGTTT.................. 201.000.00-----------------1.00-----------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTT................................................................................................................... 181.000.00---1.00-------------------------------------------------
.....................................................................................................................ATATTCTTCAGACTTTTTGAA................................................................................................................ 211.000.00---1.00-------------------------------------------------