ID: uc002pea.1_intron_2_0_chr19_46627579_r
GENE: IGFL3(1)
chr19:46627529-46627931-


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(13)
CELL-LINE 		(1)
HEART 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES

Sense strand
ATTCTCCTAGAGCATCTTTGGAAGCATGAGGCCACGATGCTGCATCTTGGGCAAGTAGGACCCCAAATCCAAACATCATCTCATCTCATTCCCAGTGCAGCTCCCAAACCTCAACCCGATTTATTCCTCTTTATCTCTAACATTATTCCAGCCTCCTGTGCCCTACTAGTCACCTCAAAGGGTGACTGAGCGTGCTGCTCAGGGCCTGCCTGAACGGGATCCCATACAGACTTAGCCCCAAGTGATAATCTCCACCTTTAAACCACCCTAACCTCTGTTTGTTTGTTTGTTTGTTTTTTCCATACTTGTCACATTCTCAGCTCCATGTTCAACCTTTTTCCTTTCTCCCTTAGCTCTTGTCTGCTGGATAACAGTCTTCCTCCTCCAGTGTTCAAAAGGAACT
..................................................................................................................................................................................................................................................................................(((...((.((...((.((.......)).))....)).))...)))...................................................................................
............................................................................................................................................................................................................................................................................269.................................................................................353................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR343336SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577738(Rovira)
total RNA. (breast)
........................................................................................................................................................................................................................................................................................................................................TCAACCTTTTTCCTTTAAG........................................................1911.000.00--7.002.002.00---------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTACT........................................................................................................267.000.001.006.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................CAACCTTTTTCCTTTAAG........................................................185.000.00--3.002.00----------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCG.........................................................................................................255.000.003.002.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCG.......................................................................................................274.000.002.002.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCGAG.......................................................................................................274.000.003.001.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTAGAG.........................................................................................................254.000.004.00-------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTAGG.........................................................................................................244.000.004.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCTC........................................................................................................264.000.002.002.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCTG........................................................................................................264.000.003.001.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCTTG........................................................................................................263.000.003.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTAGG.........................................................................................................253.000.001.002.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTTC......................................................................................................282.000.001.001.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCG........................................................................................................262.000.00-2.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCCT.........................................................................................................252.000.00-2.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCTT......................................................................................................282.000.001.001.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTCTTG.........................................................................................................252.000.002.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTTGGT....................................................................................................302.000.00-2.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTAGGA........................................................................................................262.000.00-2.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCGAG......................................................................................................282.000.001.001.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCGGC.....................................................................................................292.000.002.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTCAGG.........................................................................................................252.000.002.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCGC........................................................................................................262.000.00-2.00------------------------------
................................................................................................................................................................................................................................................................................CTCTGTTTGTTTGTTTGTTTTGAG...........................................................................................................242.000.002.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTC.......................................................................................................2731.331.331.33-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTTGAG....................................................................................................301.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCTC......................................................................................................281.000.00-1.00------------------------------
..........................................................................................................................................................................................................................................................................................TTGTTTGTTTGTTTTTTCCGG....................................................................................................211.000.001.00-------------------------------
..........................................................................................................................................................................CACCTCAAAGGGTGACATG......................................................................................................................................................................................................................191.000.00----1.00---------------------------
.........................................................................................................................................................................................................GGGCCTGCCTGAACGC..........................................................................................................................................................................................161.000.00-----------------1.00--------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCCTA.......................................................................................................271.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGGC............................................................................................................221.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCCTC........................................................................................................261.000.001.00-------------------------------
.TTCTCCTAGAGCATCTTTTTTC............................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------1.00--------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCCTG........................................................................................................261.000.001.00-------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTTCATG......................................................................................................271.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCTTC........................................................................................................261.000.00-1.00------------------------------
..............................................................................................................................................................................................................................................................................ACCTCTGTTTGTTTGTTTGTTTTGAG...........................................................................................................261.000.001.00-------------------------------
.........................................................................................................................................................................................................................................................................................TTTGTTTGTTTGTTTTTTCCGTGT..................................................................................................241.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTATT.....................................................................................................291.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTTGGC....................................................................................................301.000.001.00-------------------------------
...................................................................................................................................................................................................................................................................................TGTTTGTTTGTTTGTTTGTTTTTTCCTGGC..................................................................................................301.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTAC......................................................................................................281.000.001.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................ACCTTTTTCCTTTCTCTCAG....................................................201.000.00---1.00----------------------------
.................TTGGAAGCATGAGGCCACG...............................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------1.00----------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTGGTG.........................................................................................................241.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTCTGG.............................................................................................................211.000.00-1.00------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTCGG........................................................................................................251.000.001.00-------------------------------
.........GAGCATCTTTGGAAGCATGAGGCCAC................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------1.00------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCGG.......................................................................................................271.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTATC......................................................................................................281.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................CCTCTGTTTGTTTGTTTGTTTGTTAGG.........................................................................................................271.000.001.00-------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTTTCC.......................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCAGG.......................................................................................................271.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTATG........................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCTTG.....................................................................................................291.000.00-1.00------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................CTGGATAACAGTCTTGTC......................181.000.00------------1.00-------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGTTCAAAAGTCA..181.000.00--------------1.00-----------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTACTT.......................................................................................................271.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCCC......................................................................................................281.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTCCAG....................................................................................................301.000.00----1.00---------------------------
..........AGCATCTTTGGAAGCATG.......................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----1.00---------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTCTTC.............................................................................................................211.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCATC.......................................................................................................271.000.00-1.00------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCGA.......................................................................................................271.000.001.00-------------------------------
................................................................................................................................................................................................................................................................................CTCTGTTTGTTTGTTTGTTTGTTTTCATC......................................................................................................291.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGGGGT..........................................................................................................241.000.00-1.00------------------------------
................................................................................................................................................................................................................................................................................CTCTGTTTGTTTGTTTGTTTGTTTTTGGAG.....................................................................................................301.000.001.00-------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTCTGG.......................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTACCT...........................................................................................................231.000.00-1.00------------------------------
.......................................................................................................................................................................................................................................................................................TGTTTGTTTGTTTGTTTTTTCCGGA...................................................................................................251.000.001.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................TCAACCTTTTTCCTTCAAG........................................................191.000.00--1.00-----------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTCGG......................................................................................................281.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTCTG.........................................................................................................251.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTCTGC.........................................................................................................251.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTATC........................................................................................................261.000.00-1.00------------------------------
...............CTTTGGAAGCATGAGGCCAC................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------------1.00-------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCTAG......................................................................................................281.000.001.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................CCTTTCTCCCTTAGCCCGG.............................................191.000.00---1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................TCAACCTTTTTCCTTAAG.........................................................181.000.00--1.00-----------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTTCCC.......................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTCAC.......................................................................................................271.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTCAG........................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTGAG..........................................................................................................241.000.00-1.00------------------------------
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTCCTT.........................................................................................................241.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................TCTGTTTGTTTGTTTGTTTGTTTTTTCTCTC...................................................................................................3130.671.33-0.67------------------------------
................................................................................................................................................................................................................................................................................CTCTGTTTGTTTGTTTGTTTGTTTTTTG.......................................................................................................2820.500.50----0.50---------------------------
................................................................................................................................................................................................................................................................................CTCTGTTTGTTTGTTTGTTTGTTTTTT........................................................................................................2720.500.500.50-------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCTCCTCCAGTG.............1730.330.33----------------------------0.33---
..................................................................................................................................................................................................................................................................................CTGTTTGTTTGTTTGTTTGTTTTTTC.......................................................................................................2650.200.20-----------------------------0.20--

Antisense strand
ATTCTCCTAGAGCATCTTTGGAAGCATGAGGCCACGATGCTGCATCTTGGGCAAGTAGGACCCCAAATCCAAACATCATCTCATCTCATTCCCAGTGCAGCTCCCAAACCTCAACCCGATTTATTCCTCTTTATCTCTAACATTATTCCAGCCTCCTGTGCCCTACTAGTCACCTCAAAGGGTGACTGAGCGTGCTGCTCAGGGCCTGCCTGAACGGGATCCCATACAGACTTAGCCCCAAGTGATAATCTCCACCTTTAAACCACCCTAACCTCTGTTTGTTTGTTTGTTTGTTTTTTCCATACTTGTCACATTCTCAGCTCCATGTTCAACCTTTTTCCTTTCTCCCTTAGCTCTTGTCTGCTGGATAACAGTCTTCCTCCTCCAGTGTTCAAAAGGAACT
..................................................................................................................................................................................................................................................................................(((...((.((...((.((.......)).))....)).))...)))...................................................................................
............................................................................................................................................................................................................................................................................269.................................................................................353................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR343336SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577738(Rovira)
total RNA. (breast)
.............................................................................................................................................................................................................................................................................................................................................CTTTTTCCTTTCTCCCATC................................................... 194.000.00-----4.00--------------------------
..............................................................................................................................................................................................................................................................................................................................AGCTCCATGTTCAACACT................................................................... 183.000.00----------------1.00-1.00-1.00-----------
...........................................................................................................................................................................................................................................................................................................................CTCAGCTCCATGTTCCGC...................................................................... 181.000.00---------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................................ACAGTCTTCCTCCTCCAGAG............. 201.000.00-------1.00------------------------
..................................................................................ATCTCATTCCCAGTGACGG.............................................................................................................................................................................................................................................................................................................. 191.000.00--------------------------1.00-----
............................................................................................................................TGGAATAATGTTAGAGATAAAGAGGA............................................................................................................................................................................................................................................................. 2611.001.00------1.00-------------------------
.......................................................................GAGCTGCACTGGGAATGAGATGAGATGATGTT............................................................................................................................................................................................................................................................................................................ 3211.001.00----------1.00---------------------
.............................................................................GCTGCACTGGGAATGAGATGAGAT.............................................................................................................................................................................................................................................................................................................. 2411.001.00---------------1.00----------------
............................................................................CATCTCATCTCATTCCCAG.................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................................................ACTGGAGGAGGAAGACTGTTAT.............. 2211.001.00----------------------1.00---------
..............................................................................................................................................................................................................................................................CCTTTAAACCACCCTGCT................................................................................................................................... 181.000.00-------------------1.00------------
..................................................................................................................................................................................................................................................................................ACAAACAAACAAACAAACAG............................................................................................................. 2001.001.00-----------------------1.00--------
............................................................................................................................................................TGTGCCCTACTAGTCAAA..................................................................................................................................................................................................................................... 181.000.00-------------1.00------------------
......................................................................................................................................................TTGAGGTGACTAGTAGGGCACAGGAGGC................................................................................................................................................................................................................................. 2811.001.00------1.00-------------------------
.................................................................................................................................................................TGAGGTGACTAGTAGG.................................................................................................................................................................................................................................. 1620.500.50------0.50-------------------------
.........................................................................................................................................................................................CTGAGCGTGCTGCTCATGG....................................................................................................................................................................................................... 190.330.00-------0.11-------------------0.22----
.........................................................................................................................................................................................CTGAGCGTGCTGCTCACGG....................................................................................................................................................................................................... 190.220.00---------------------------0.11---0.11
.........................................................................................................................................................................................CTGAGCGTGCTGCTCATTG....................................................................................................................................................................................................... 190.220.00---------------------------0.22----
...............................................................................................................................................................................................................................................................................................................................................................................GAGGAAGACTGTTAT..................... 1570.140.14------------------------------0.14-
.........................................................................................................................................................................................CTGAGCGTGCTGCTCAGTG....................................................................................................................................................................................................... 190.110.00---------------------------0.11----
.........................................................................................................................................................................................GAGCAGCACGCTCAG........................................................................................................................................................................................................... 1590.110.11---------------------------0.11----