ID: uc002ooi.1_intron_0_0_chr19_41107544_f.3p
GENE: LTBP4(1)
chr19:41110741-41110990+


(1)
B-CELL 		(10)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(3)
CERVIX 		(1)
HELA 		(1)
OTHER 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGCCGACTTAGTGGGTGGGACCGTACCTCTGATGGCTGAACAACTGGACTGGGCCAATGCTGATGCCAGAATTGGGGCGGGGCCACATGACAGCTAAGGGCGGAGCGACTTAGAAATGAATGATACCTTGAGGGAGTAGGGACCCCAGGAGAACCTGCCAGGAATGGTGGCGCCCCTGAGTGTCCTCGTTCTCCTCCCAGTCCTGTGTCCCTTGATCTGTCACAATGGCGGTGTGTGCGTGAAGCCTGAC
................................................................(((........)))((((((.(((..((.(((((.((...))..)))))...)).)))...((....))......)).))))........................................................................................................
..............................................................63......................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
...................................................................AGAATTGGGGCGGGGCATCG...................................................................................................................................................................2012.000.002.003.004.002.00-----------1.00-----------------------
...................................................................AGAATTGGGGCGGGGCATCT...................................................................................................................................................................2012.000.003.005.00-1.002.00--------------1.00-------------------
...................................................................AGAATTGGGGCGGGGCATGT...................................................................................................................................................................208.000.003.004.00--1.00----------------------------------
...................................................................AGAATTGGGGCGGGGCA......................................................................................................................................................................176.000.00-3.001.001.00--------------1.00--------------------
...................................................................AGAATTGGGGCGGGGCATAT...................................................................................................................................................................206.000.004.00-1.001.00-----------------------------------
...................................................................AGAATTGGGGCGGGGTA......................................................................................................................................................................174.000.001.001.002.00------------------------------------
...................................................................AGAATTGGGGCGGGGCATC....................................................................................................................................................................193.000.002.00--1.00-----------------------------------
...................................................................AGAATTGGGGCGGGGCGTGT...................................................................................................................................................................203.000.002.00-1.00------------------------------------
...................................................................AGAATTGGGGCGGGGCATTG...................................................................................................................................................................202.000.001.00--1.00-----------------------------------
...................................................................AGAATTGGGGCGGGGCATA....................................................................................................................................................................192.000.001.00------1.00-------------------------------
................................................................................................................................TGAGGGAGTAGGGACAGTT.......................................................................................................192.000.00------1.00------------------1.00-------------
...................................................................AGAATTGGGGCGGGGCTTTT...................................................................................................................................................................201.000.00-1.00-------------------------------------
.........................................................................................................................................AGGGACCCCAGGAGAACCTGCC...........................................................................................2211.001.00----------1.00----------------------------
...................................................................AGAATTGGGGCGGGGCAC.....................................................................................................................................................................181.000.001.00--------------------------------------
..........................................................................................................................................GGGACCCCAGGAGAACCTGCC...........................................................................................2111.001.00-----1.00---------------------------------
...................................................................AGAATTGGGGCGGGGCGTAT...................................................................................................................................................................201.000.00-------1.00-------------------------------
...................................................................AGAATTGGGGCGGGGCAT.....................................................................................................................................................................181.000.00--1.00------------------------------------
...............................................................................................................................................................................................................................AATGGCGGTGTGTGCGTGGAG......211.000.00-------------------------------1.00-------
...................................................................AGAATTGGGGCGGGGCACAT...................................................................................................................................................................201.000.00-1.00-------------------------------------
.....ACTTAGTGGGTGGGACCGTACCTC.............................................................................................................................................................................................................................2411.001.00------------------------------1.00--------
...................................................................AGAATTGGGGCGGGGCATAG...................................................................................................................................................................201.000.001.00--------------------------------------
................................................................................................................................................CCAGGAGAACCTGCCGA.........................................................................................171.000.00---------1.00-----------------------------
...................................................................AGAATTGGGGCGGGGCATAA...................................................................................................................................................................201.000.00--------1.00------------------------------
..................................................................................................................................................AGGAGAACCTGCCAGGAA......................................................................................1811.001.00--------------------1.00------------------
...................................................................AGAATTGGGGCGGGGCGTCG...................................................................................................................................................................201.000.00---1.00-----------------------------------
...................................................................AGAATTGGGGCGGGGCATTT...................................................................................................................................................................201.000.00-1.00-------------------------------------
...................................................................AGAATTGGGGCGGGGCGATT...................................................................................................................................................................201.000.00-----------------------------------1.00---
...............................................................................................................................................................................................................................AATGGCGGTGTGTGCGTGA........1911.001.00---------------------------1.00-----------
...................................................................................................................................................................................................................TTGATCTGTCACAATGGC.....................1811.001.00-----1.00---------------------------------
...................................................................AGAATTGGGGCGGGGCCA.....................................................................................................................................................................1811.001.00---1.00-----------------------------------
...................................................................AGAATTGGGGCGGGGCATAC...................................................................................................................................................................201.000.001.00--------------------------------------
.................................................................................................................................................................................................................................TGGCGGTGTGTGCGTGAAGC.....2011.001.00----------------1.00----------------------
...................................................................AGAATTGGGGCGGGGCGTG....................................................................................................................................................................191.000.00----1.00----------------------------------
............................................................................................................................................................................................................GTGTCCCTTGATCTGTCACA..........................2011.001.00----------------------------------1.00----
...................................................................AGAATTGGGGCGGGGCATG....................................................................................................................................................................191.000.00---1.00-----------------------------------
...........................TCTGATGGCTGAACAACTGGACTGGG.....................................................................................................................................................................................................2611.001.00------------------------------------1.00--
...................................................................................................................................................GGAGAACCTGCCAGGAATGG...................................................................................2011.001.00---------1.00-----------------------------
...................................................................AGAATTGGGGCGGGGCCACAGGA................................................................................................................................................................231.000.00--1.00------------------------------------
...................................................................................................................................................................................................................TTGATCTGTCACAATGG......................1711.001.00-----------------------------1.00---------
......................................AACAACTGGACTGGGCCAATGCTGATGCCA......................................................................................................................................................................................3011.001.00-----------------------1.00---------------
................................................................................................................................TGAGGGAGTAGGGACACTG.......................................................................................................191.000.00------1.00--------------------------------
....GACTTAGTGGGTGGGACCGTACCTCTG...........................................................................................................................................................................................................................2711.001.00--------------------------------1.00------
..............................................................................................................................................................CAGGAATGGTGGCGCCC...........................................................................1711.001.00-----------------1.00---------------------
...................................................................AGAATTGGGGCGGGGCC......................................................................................................................................................................1711.001.00-1.00-------------------------------------
...................................................................AGAATTGGGGCGGGGAATC....................................................................................................................................................................191.000.001.00--------------------------------------
...................................................................AGAATTGGGGCGGGGAATA....................................................................................................................................................................191.000.00--1.00------------------------------------
...................................................................AGAATTGGGGCGGGGCGT.....................................................................................................................................................................181.000.00-1.00-------------------------------------
..................................................................................................................................................................................................................CTTGATCTGTCACAATGGC.....................1911.001.00------------------------1.00--------------
.......................................................................TTGGGGCGGGGCCACTGA.................................................................................................................................................................181.000.00-------------------------------------1.00-
...................................................................AGAATTGGGGCGGGGCCTCT...................................................................................................................................................................2011.001.00--------1.00------------------------------
...............................................................................................................................................CCCAGGAGAACCTGCCAGGAATGGT..................................................................................2511.001.00----------------------1.00----------------
...............................................................................................................................................................................................................................AATGGCGGTGTGTGCGTGAAGCCTGAC2711.001.00--------------------------1.00------------
...............................................................................................................................................................................................................TCCCTTGATCTGTCA............................1570.140.14--------------------------------------0.14

Antisense strand
TGCCGACTTAGTGGGTGGGACCGTACCTCTGATGGCTGAACAACTGGACTGGGCCAATGCTGATGCCAGAATTGGGGCGGGGCCACATGACAGCTAAGGGCGGAGCGACTTAGAAATGAATGATACCTTGAGGGAGTAGGGACCCCAGGAGAACCTGCCAGGAATGGTGGCGCCCCTGAGTGTCCTCGTTCTCCTCCCAGTCCTGTGTCCCTTGATCTGTCACAATGGCGGTGTGTGCGTGAAGCCTGAC
................................................................(((........)))((((((.(((..((.(((((.((...))..)))))...)).)))...((....))......)).))))........................................................................................................
..............................................................63......................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................TCTCCTCCCAGTCCTCGT........................................... 181.000.00------------1.00--------------------------
..........................................................................................................................................................................................CAGGACTGGGAGGAGAACG............................................. 1911.001.00---------------------------------1.00-----
...........................................................................................................ACTTAGAAATGAATGTCC............................................................................................................................. 181.000.00-----------1.00---------------------------
.......................................................................................................................................................................CACTCAGGGGCGCCA.................................................................... 1511.001.00---------------------1.00-----------------
...........................................................................................................................................................................................GACACAGGACTGGGAGGAGAAC......................................... 2211.001.00----------1.00----------------------------
...............................................................................................................................................................................AGAACGAGGACACTCAG.......................................................... 1711.001.00-------------1.00-------------------------
.............................................................................................................................................................................................TCTCCTCCCAGTCCTCCGG.......................................... 191.000.00----------------------------1.00----------
..........................................................GCTGATGCCAGAATTTCTC............................................................................................................................................................................. 191.000.00--------------1.00------------------------