| (2) B-CELL | (2) BRAIN | (1) BREAST | (7) CELL-LINE | (5) CERVIX | (1) FIBROBLAST | (1) HELA | (1) LIVER | (1) OTHER | (1) RRP40.ip | (4) SKIN | (2) UTERUS |
| GTGCCCAGTGCCAGCCAGCTCTTCGTGCGTCTCTCATCTACTGGGCAGCGGTGAGGACAGTCCTGTCCAACAGGGAGGGAGGACAGTCCTGTCCAACAGGGAGGGAGGTCAGGGGAGAAGGCAAGATGCTAGCCAGATCACTGAGGCCAGAAAGGGGTCCCAGCCAAGGAGCATTGAAGGAGCAAAGGCTGGGAGGGAGGACAGGCCTGGTAGGTTTGTCTTCTGGTATCAAAGGTGTGACAGGTGTTGG ..................................................((..((((((..((((((............))))))..)))))).)).........((((...((....(((.....)))..)).))))............................................................................................................... ............................................45..............................................................................................141........................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR015363(GSM380328) Germinal Center B cell (GC40). (B cell) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189787 | SRR189783 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189782 | SRR040031(GSM532916) G013T. (cervix) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR189784 | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR060984(GSM569188) Human plasma cell [09-001]. (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR040007(GSM532892) G601T. (cervix) | SRR040039(GSM532924) G531T. (cervix) | SRR040025(GSM532910) G613T. (cervix) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR040043(GSM532928) G428T. (cervix) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577743(Rovira) total RNA. (breast) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................AGGCAAGATGCTAGCATAG................................................................................................................. | 19 | 24.00 | 0.00 | 8.00 | - | 7.00 | - | - | - | - | - | 1.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | |
| ...........................................................................................................................................................................CATTGAAGGAGCAAAGGCTGGGAGGGA.................................................... | 27 | 1 | 11.00 | 11.00 | - | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................AGGCAAGATGCTAGCATA.................................................................................................................. | 18 | 11.00 | 0.00 | 7.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................GGTGAGGACAGTCCTGTC....................................................................................................................................................................................... | 18 | 1 | 7.00 | 7.00 | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................CATCTACTGGGCAGCATT...................................................................................................................................................................................................... | 18 | 4.00 | 0.00 | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................TGAGGCCAGAAAGGGAGCC.......................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................AGGCAAGATGCTAGCAT................................................................................................................... | 17 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CAACAGGGAGGGAGGACAGT................................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................GGGAGGACAGTCCTGTC............................................................................................................................................................. | 17 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................CAACAGGGAGGGAGGTCAGGGGAGAAGGCAAG............................................................................................................................. | 32 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................CATCTACTGGGCAGCATTG..................................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................AGGCAAGATGCTAGCCG................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................TCTCATCTACTGGGCAGCG........................................................................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............AGCCAGCTCTTCGTGCGTCTCTCATCC................................................................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................AGCAAAGGCTGGGAGGATGT.................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................AGGCAAGATGCTAGCATAT................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...........................................................................................................................................................................CATTGAAGGAGCAAAGGCTGGGAGGGG.................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................ACAGGGAGGGAGGTCAGGGGAGAAGGCAAG............................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................CTCATCTACTGGGCAGCG........................................................................................................................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................AGGCAAGATGCTAGCACAG................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................AAAGGCTGGGAGGGAGAG................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................AGGCAAGATGCTAGCCTAG................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGAGGACAGTCCTGTAAAC.................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................ACTGGGCAGCGGTGAGGACAGTCC........................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................AGGCAAGATGCTAGCATG.................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................AGGCAAGATGCTAGCATAA................................................................................................................. | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................CCAAGGAGCATTGAACT...................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........................................................................................................GTCAGGGGAGAAGGC................................................................................................................................ | 15 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GTGCCCAGTGCCAGCCAGCTCTTCGTGCGTCTCTCATCTACTGGGCAGCGGTGAGGACAGTCCTGTCCAACAGGGAGGGAGGACAGTCCTGTCCAACAGGGAGGGAGGTCAGGGGAGAAGGCAAGATGCTAGCCAGATCACTGAGGCCAGAAAGGGGTCCCAGCCAAGGAGCATTGAAGGAGCAAAGGCTGGGAGGGAGGACAGGCCTGGTAGGTTTGTCTTCTGGTATCAAAGGTGTGACAGGTGTTGG ..................................................((..((((((..((((((............))))))..)))))).)).........((((...((....(((.....)))..)).))))............................................................................................................... ............................................45..............................................................................................141........................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR015363(GSM380328) Germinal Center B cell (GC40). (B cell) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR037940(GSM510478) 293cand5_rep2. (cell line) | SRR094132(GSM651908) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189787 | SRR189783 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189782 | SRR040031(GSM532916) G013T. (cervix) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR189784 | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR060984(GSM569188) Human plasma cell [09-001]. (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR040007(GSM532892) G601T. (cervix) | SRR040039(GSM532924) G531T. (cervix) | SRR040025(GSM532910) G613T. (cervix) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR040043(GSM532928) G428T. (cervix) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577743(Rovira) total RNA. (breast) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................CAGTCCTGTCCAACAGGC..................................................................................................................................................... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................AGGGAGGACAGGCCTGGTGC..................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...................................................................................................................................................................................CCTCCCAGCCTTTGCTC...................................................... | 17 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |