ID: uc002mdc.2_intron_1_0_chr19_5785523_r
GENE: (11)
chr19:5785473-5785663-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(6)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(4)
HELA 		(3)
LIVER 		(1)
OTHER 		(10)
SKIN

Sense strand
GTGGAGAAGACCCGGCGCTTTCTGCTCGAGTGGCTGTCCTTCCTGTGCCGGTGGGCACCGGGGCTGGCTGGGGTGGGCGGCGCGTGGGCCGCGGCTGGTTAGAGCTGACTCAAGCCTGTCCTGCCCGCCCACCCGCCGCAGGTACGTGCCCGTGGGGCTGCTGGAGCGGCTCCCACAGAGGATCAACGAGC
.............................................................................(((((.(((((.((.(((.((.(((.(((......)))))).)).)))))))))).))))).....................................................
.............................................................................78.............................................................141................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189786SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)
....................................................................TGGGGTGGGCGGCGCGTGGGCCGCGGCTGGTTAGAGCTGACTCAAGCCTGTCCTGCCCGCCCACCCGCCG.....................................................70115.0015.009.006.00-----------------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGT.................................................2113.000.00----1.00-1.00----1.00----1.00---1.00--1.00--1.00-1.00-1.00-------1.00----------1.001.00---1.00
.........................................................................................................................TGCCCGCCCACCCGCCGCAGA.................................................219.000.00------1.001.00---------1.00----1.00-1.00------1.00---1.00---------1.001.00--------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGTAT...............................................233.000.00--2.00--1.00-------------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGAA................................................222.000.00----------------------------------1.00------------1.00-------
..................................................................................CGTGGGCCGCGGCTGGTTAG.........................................................................................2012.002.00---2.00---------------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGTA................................................222.000.00------------------------------------------1.00--------1.00---
................................................................................CGCGTGGGCCGCGGCCGCT............................................................................................192.000.00--------------------------------1.00-------1.00--------------
.........................................................................................................................TGCCCGCCCACCCGCCGCCGA.................................................2111.001.00----1.00--------------------------------------------------
................................................................................................................................................................CTGGAGCGGCTCCCACAGAGGC.........221.000.00-------------------------------------1.00-----------------
.................................................................................................................................................GTGCCCGTGGGGCTGCTGGAG.........................2111.001.00--------------1.00----------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGAGA...............................................231.000.00--------1.00----------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGC....................................................1811.001.00-------------------------1.00-----------------------------
........................................................................................................................CTGCCCGCCCACCCGCCGCAG..................................................2111.001.00---------------------1.00---------------------------------
.............................................................................CGGCGCGTGGGCCGCGT.................................................................................................171.000.00----------1.00--------------------------------------------
.........................................................................TGGGCGGCGCGTGGGCCGCGGCTGGTTT..........................................................................................281.000.00-----------------------------------------1.00-------------
........................................................................................................................CTGCCCGCCCACCCGCCGCAGAA................................................2311.001.00-----1.00-------------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGATAG.................................................211.000.00---------------------------1.00---------------------------
...GAGAAGACCCGGCGCTTT..........................................................................................................................................................................1811.001.00--------1.00----------------------------------------------
........................................................................................................................CTGCCCGCCCACCCGCCGCAGA.................................................2211.001.00-----------------------------1.00-------------------------
........................................................................................................................CTGCCCGCCCACCCGCCGCAGT.................................................2211.001.00-----------1.00-------------------------------------------
.................................................................................GCGTGGGCCGCGGCTGGAAGA.........................................................................................211.000.00-------1.00-----------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGCAA...............................................231.000.00------------------------------------------------1.00------
....................TCTGCTCGAGTGGCTGTCC........................................................................................................................................................1911.001.00---------------------------------------1.00---------------
.......................GCTCGAGTGGCTGTCCTTC.....................................................................................................................................................1911.001.00---------------1.00---------------------------------------
...................................................................CTGGGGTGGGCGGCGCGTGGGCCGCGGCTGGTTAGAGCTGACTCAAGCCTGTCCTGCCCGCCCACCCGCCG.....................................................7111.001.00-------------------------------------------1.00-----------
..............................................................................GGCGCGTGGGCCGCGT.................................................................................................161.000.00----------1.00--------------------------------------------
.........................................................................................................................................................................CTCCCACAGAGGATCAAC....1811.001.00--1.00----------------------------------------------------
....................................................................................................................................................CCCGTGGGGCTGCTGTTA.........................181.000.00---------1.00---------------------------------------------
.............................................................................................GCTGGTTAGAGCTGACTCAAGC............................................................................2211.001.00-------------------1.00-----------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAGAT................................................221.000.00---------1.00---------------------------------------------
....................................................................TGGGGTGGGCGGCGCGTGGGCCGCGGCCG..............................................................................................291.000.00--------------------------------------------1.00----------
............................................................................................................................CCGCCCACCCGCCGCTCC.................................................181.000.00------------1.00------------------------------------------
..........................CGAGTGGCTGTCCTTCCTGT.................................................................................................................................................2011.001.00--1.00----------------------------------------------------
.........................................................................................................................TGCCCGCCCACCCGCCGCAATT................................................221.000.00-----------------------------------------------------1.00-
..................................................................................CGTGGGCCGCGGCTGGTTAGA........................................................................................2111.001.00----------------------------------------------------1.00--
....................................................................................TGGGCCGCGGCTGGTTAGAG.......................................................................................2011.001.00-------------1.00-----------------------------------------
.................................................................................GCGTGGGCCGCGGCTGGTTTGCG.......................................................................................231.000.00------------------1.00------------------------------------

Antisense strand
GTGGAGAAGACCCGGCGCTTTCTGCTCGAGTGGCTGTCCTTCCTGTGCCGGTGGGCACCGGGGCTGGCTGGGGTGGGCGGCGCGTGGGCCGCGGCTGGTTAGAGCTGACTCAAGCCTGTCCTGCCCGCCCACCCGCCGCAGGTACGTGCCCGTGGGGCTGCTGGAGCGGCTCCCACAGAGGATCAACGAGC
.............................................................................(((((.(((((.((.(((.((.(((.(((......)))))).)).)))))))))).))))).....................................................
.............................................................................78.............................................................141................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189786SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)
....................................................................TGGGGTGGGCGGCGCCG.......................................................................................................... 171.000.00---------------------------------1.00---------------------
....................................................................................................AGAGCTGACTCAAGCGGAC........................................................................ 191.000.00-------------1.00-----------------------------------------
.................................................................GGCTGGGGTGGGCGGCGC............................................................................................................ 181.000.00------------1.00------------------------------------------
.............................GTGGCTGTCCTTCCTCGGA............................................................................................................................................... 191.000.00------------------------------------1.00------------------