ID: uc002kkf.1_intron_8_0_chr18_198133_f.3p
GENE: USP14(9)
chr18:199002-199251+


(2)
AGO2.ip 		(4)
B-CELL 		(1)
BREAST 		(15)
CELL-LINE 		(5)
HEART 		(1)
HELA 		(3)
LIVER 		(3)
OTHER 		(16)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TACTCATTGTTGTTTCTAGAATTGTTGGTAGCCAAATGAACATTCTTAAGTATGTTGAAATGAATCTTGGGAGACTAAAAGGTTTTAAATGCCAATGAATGATACTATTAATTTTAATGGAATTAGGATAATGTATTATATTCAAGAGTATATAACAAATTGAATACCCGTTGGCATATTCCTTATCTTAGTTTACAAAGCATGAAATGTACAGAATCTGAAGAAGAAGAAGTCACCAAAGGAAAGGAAA
.......................................................................................................................(((((((((((.(((..((((((....))))))..)))....(((((((....))..)))))..)))))))))))........................................................
................................................................................................97.....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................ATTCCTTATCTTAGTTTACAAAGA.................................................24113.007.00-7.00-------2.00--1.002.00----------------1.00--------------------
.....................................................................................................................................TATTATATTCAAGAGTATATAACAAATTGAATACCCGTTGGCATATTCCTTATCTTAGTTTACAAAG..................................................67111.0011.0011.00--------------------------------------------------
.................................................................................................................................................................................ATTCCTTATCTTAGTTTACAAAG..................................................2317.007.00--------------2.00-1.00-------1.00------1.00-------1.00------1.00----
..........................................................................................................................................TATTCAAGAGTATATAACAAATTGAATACCCGTTGGCATATTCCTTATCTTAGTTTAC......................................................5817.007.007.00--------------------------------------------------
........................................................................................................................................TATATTCAAGAGTATATAACAAATTGAATACCCGTTGGCATATTCCTTATCTTAGTTTACAAAG..................................................6416.006.006.00--------------------------------------------------
...........................................................................................................................................................................................................GAAATGTACAGAATCTGAAGAAGA.......................2413.003.00------2.00-------------------------------------1.00------
..........................................................................................................................................................................................................TGAAATGTACAGAATCTGAAGAAGAAG.....................2713.003.00--3.00------------------------------------------------
............................................................................................................................................................................................................AAATGTACAGAATCTGAAGA..........................2012.002.00-----------2.00---------------------------------------
.........................................................................................................................................................................................................ATGAAATGTACAGAATCTGAAG...........................2212.002.00---2.00-----------------------------------------------
......................................................................................................................................................TATAACAAATTGAATACCCGTTGGC...........................................................................2512.002.00----------2.00----------------------------------------
..............................................................................................................................................................................................................................GAAGAAGAAGTCACCAAAGGAA......2212.002.00---------------2.00-----------------------------------
...................................................................................................................................................................................................................CAGAATCTGAAGAAGAAGAAGTCACC.............2612.002.00---2.00-----------------------------------------------
.....................................................................................................ATACTATTAATTTTAATAAG.................................................................................................................................202.000.00--------2.00------------------------------------------
........................................................................................................................................................................................................CATGAAATGTACAGAATCTGAAGAAG........................2611.001.00---------------------------------1.00-----------------
.............................................................................................................................................................................................................AATGTACAGAATCTGAAGAAGA.......................2211.001.00-----1.00---------------------------------------------
..............................................................................................................................................................................................................ATGTACAGAATCTGAAGAAGAAGA....................2411.001.00------------------1.00--------------------------------
........................................................................................................................................................................................................CATGAAATGTACAGAATCTGAAGAAGAAGAAGT.................3311.001.00--------------------1.00------------------------------
............................................................................................................................................................................................................AAATGTACAGAATCTGAAGAAGA.......................2311.001.00---------------------1.00-----------------------------
...............................................................................................................................................................................................................TGTACAGAATCTGAAGAA.........................1811.001.00--------------------------1.00------------------------
.................................................................................................................................................................................ATTCCTTATCTTAGTTTACAAAGAA................................................2511.007.00-----------------------1.00---------------------------
..........................................................AATGAATCTTGGGAGACTAAAAG.........................................................................................................................................................................2311.001.00----1.00----------------------------------------------
..................................................................................................................................................................................................................ACAGAATCTGAAGAAGAAGAAGT.................2311.001.00---------------------------------------------1.00-----
..................................................................................................................................................................................................................ACAGAATCTGAAGAAGAAGA....................2011.001.00--------------------------------1.00------------------
..............................................................................................................................................................................CATATTCCTTATCTTAAAG.........................................................191.000.00-----------------------------------1.00---------------
............................................................................................................................................................................................................AAATGTACAGAATCTGAAG...........................1911.001.00----1.00----------------------------------------------
..............................................................................................................................................................ATTGAATACCCGTTGGCATATTCC....................................................................2411.001.00------------------------------------------1.00--------
................................................................................................................................................................................................................GTACAGAATCTGAAGAAT........................181.000.00-----------------------------1.00---------------------
....................................................................................................................................................................TACCCGTTGGCATATTCCTTAT................................................................2211.001.00-------1.00-------------------------------------------
............................................................................................................................................................................................................AAATGTACAGAATCTGAAGAAGAAGAAGTC................3011.001.00-----1.00---------------------------------------------
..............................................................................................................................................................................................................ATGTACAGAATCTGAAGAAGAAGAAG..................2611.001.00--1.00------------------------------------------------
...........................................................................................................................................................................................................GAAATGTACAGAATCTGAAGAAGAAG.....................2611.001.00-------------------1.00-------------------------------
...................................................................................................................AATGGAATTAGGATAATGTAT..................................................................................................................2111.001.00-------------------------------------1.00-------------
.............................................................................................................................................................................................................AATGTACAGAATCTGAAGAAGAAGA....................2511.001.00----------------------1.00----------------------------
..........................................................................................................................................................................................................................TGAAGAAGAAGAAGTAAAA.............191.000.00---1.00-----------------------------------------------
...................................................................................................................................................................................................................CAGAATCTGAAGAAGAAGAAGTC................2311.001.00-----1.00---------------------------------------------
.................................................................................................................................................................................................................TACAGAATCTGAAGAAGAAGAAG..................2311.001.00------------1.00--------------------------------------
...............................................................................................................................................................................................................TGTACAGAATCTGAAGAAA........................1911.001.00-------1.00-------------------------------------------
........................................................................................................................................................................................................CATGAAATGTACAGAATCTGAAGAAGAAG.....................2911.001.00-----------------------------------------1.00---------
............................................................................................................................................................................................................................AAGAAGAAGAAGTCACCAAAGGACAAG...271.000.00-------------------------------------------1.00-------
..............................................................................................................................................................................................................ATGTACAGAATCTGAAGAAGAAGAAGT.................2711.001.00---------------------------1.00-----------------------
..........................................................................................................................................................................................................TGAAATGTACAGAATCTGAAGAAGAAGA....................2811.001.00--1.00------------------------------------------------
..................................................................................................................................................................................TTCCTTATCTTAGTTTACAAAG..................................................2211.001.00------------------------------------1.00--------------
..............................................................................................................................................................................................................................GAAGAAGAAGTCACCAAAGGAAAGGA..2611.001.00-------------------------1.00-------------------------
....................................................................................................................................................................................................................AGAATCTGAAGAAGAAGAAG..................2011.001.00----------------------------------------1.00----------
........................................................................................................................................................................................................CATGAAATGTACAGAATCTGA.............................2111.001.00----------------------------1.00----------------------
...........................................................................................................................................................CAAATTGAATACCCGTTGGCA..........................................................................2111.001.00--------------------------------------1.00------------
.............................................................................................................................................................................................................AATGTACAGAATCTGAAGAAG........................2111.001.00----1.00----------------------------------------------
..................................................................................................................................................................................................................ACAGAATCTGAAGAAGAAGAAG..................2211.001.00----------------------------------1.00----------------
..........................................................................................................................................................................................................TGAAATGTACAGAATCTGAAGAAGAAGT....................2811.003.00--1.00------------------------------------------------
..........................................................................................................................................................................................................TGAAATGTACAGAATCTGAAGAAGAA......................2611.001.00--1.00------------------------------------------------
..............................................................................................................................................................................................................ATGTACAGAATCTGAAGAAGA.......................2111.001.00----------------1.00----------------------------------
..................................................................................................................................................................................................................ACAGAATCTGAAGAAGAA......................1820.500.50-----------------------------------------------0.50---
............................................................................................................................................................................................................AAATGTACAGAATCTGA.............................1720.500.50------------------0.50--------------------------------
.................................................................................................................................................................................................................TACAGAATCTGAAGAAG........................1730.330.33----0.33----------------------------------------------
.......................................................................................................................................................................................................................ATCTGAAGAAGAAGAAG..................1770.290.29-------------------0.29-------------------------------
..................................................................................................................................................................................................................ACAGAATCTGAAGAAGA.......................1750.200.20------------------------------------------------0.20--
.........................................................................................................................................................................................................................CTGAAGAAGAAGAAGT.................1660.170.17-------------------------------------------------0.17-
...................................................................................................................AATGGAATTAGGATA........................................................................................................................1590.110.11--------------------------------------------------0.11

Antisense strand
TACTCATTGTTGTTTCTAGAATTGTTGGTAGCCAAATGAACATTCTTAAGTATGTTGAAATGAATCTTGGGAGACTAAAAGGTTTTAAATGCCAATGAATGATACTATTAATTTTAATGGAATTAGGATAATGTATTATATTCAAGAGTATATAACAAATTGAATACCCGTTGGCATATTCCTTATCTTAGTTTACAAAGCATGAAATGTACAGAATCTGAAGAAGAAGAAGTCACCAAAGGAAAGGAAA
.......................................................................................................................(((((((((((.(((..((((((....))))))..)))....(((((((....))..)))))..)))))))))))........................................................
................................................................................................97.....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189785SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
............................................................................................................................................................AAATTGAATACCCGTA.............................................................................. 161.000.00-----------------1.00---------------------------------
.................................................................................................................TTAATGGAATTAGGATTT....................................................................................................................... 181.000.00-----------------1.00---------------------------------
.....................................................................................................................................................................................TGTAAACTAAGATAAG..................................................... 1640.250.25----0.25----------------------------------------------