ID: uc002jth.2_intron_14_0_chr17_74942533_f.5p
GENE: (15)
chr17:74942483-74942732+


(1)
AGO1.ip
(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(1)
OTHER
(1)
RRP40.ip
(12)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
ACACCTGCGAGGGGATGCTGGAGCGGATCCACGCCTACATCCAGCACCAGGTCAGTGAGCCCTCTGGTCCCTGCCCCAGATCCTGTCAGACCAGAGGAGGGGGCTGAGCCAGCTTCATTGTCTGCCCAGGGCCCTGCACCCGTGAAACCATCCAACTCCCTGCTCCCTCCTCCAGCCTGTCCAGTCTCTTCCCAGAGTTCCCTCAGGGCTGGAGACAGGCAGGCCTGACTGCGGGCCTGGAAAGCAGCAC
.........................................................................................................(((.(((.....(((..((..(((((.......))).))....))..)))....))))))....................((((....)))).....................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR189782SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
..............................................................................................................AGCTTCATTGTCTGCTGGG.........................................................................................................................1932.000.0017.00---2.002.00-2.001.00-1.00---------1.00--1.00-1.001.00---1.00-1.00--1.00--
..............................................................................................................AGCTTCATTGTCTGCTGG..........................................................................................................................1810.000.005.00------------1.00--1.001.00---1.00------1.00---------
..............................................................................................................AGCTTCATTGTCTGCTG...........................................................................................................................172.000.00---------------1.00---1.00------------------
..............................................................................................................AGCTTCATTGTCTGCAGG..........................................................................................................................181.000.001.00-------------------------------------
..............................................................................................................AGCTTCATTGTCTGCTGCG.........................................................................................................................191.000.001.00-------------------------------------
....................................................................................................................................................................................................................................CTGCGGGCCTGGAAAGCTCTG.211.000.00-----------------------------1.00--------
..............................................................................................................AGCTTCATTGTCTGCTTTG.........................................................................................................................191.000.001.00-------------------------------------
.......................................................................................................................................................................................................CCCTCAGGGCTGGAGACTCT...............................201.000.00-----------1.00--------------------------
................................................................................................................................................................................CTGTCCAGTCTCTTCGGG........................................................181.000.00---------------------------------1.00----
..............................................................................................................AGCTTCATTGTCTGCTGT..........................................................................................................................181.000.001.00-------------------------------------
.............................................................................................................CAGCTTCATTGTCTGCTGGG.........................................................................................................................201.000.00---------1.00----------------------------
..............................................................................................................AGCTTCATTGTCTGCTCGG.........................................................................................................................191.000.001.00-------------------------------------
..............................................................................................................AGCTTCATTGTCTGCTGA..........................................................................................................................181.000.001.00-------------------------------------
..............................................................................................................................................................CCTGCTCCCTCCTCCGCT..........................................................................181.000.00-------------------------------1.00------
..............................................................................................................AGCTTCATTGTCTGCTGTG.........................................................................................................................191.000.001.00-------------------------------------
..............................................................................................................AGCTTCATTGTCTGCAGA..........................................................................................................................181.000.001.00-------------------------------------
.CACCTGCGAGGGGATGCTGGAGCGG................................................................................................................................................................................................................................2511.001.00---------------------------1.00----------
..............................................................................................................AGCTTCATTGTCTGCTGC..........................................................................................................................181.000.001.00-------------------------------------
.....................................................................................................................................................ATCCAACTCCCTGCTGCTG..................................................................................191.000.00--1.00-----------------------------------
..............................................................................................................AGCTTCATTGTCTGCTT...........................................................................................................................171.000.00----------------------------------1.00---

Antisense strand
ACACCTGCGAGGGGATGCTGGAGCGGATCCACGCCTACATCCAGCACCAGGTCAGTGAGCCCTCTGGTCCCTGCCCCAGATCCTGTCAGACCAGAGGAGGGGGCTGAGCCAGCTTCATTGTCTGCCCAGGGCCCTGCACCCGTGAAACCATCCAACTCCCTGCTCCCTCCTCCAGCCTGTCCAGTCTCTTCCCAGAGTTCCCTCAGGGCTGGAGACAGGCAGGCCTGACTGCGGGCCTGGAAAGCAGCAC
.........................................................................................................(((.(((.....(((..((..(((((.......))).))....))..)))....))))))....................((((....)))).....................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR189782SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
................................................................................................GAGGGGGCTGAGCCAGCGCGG..................................................................................................................................... 211.000.00-1.00------------------------------------
.......................................................................................................................................................................TCCTCCAGCCTGTCCATTA................................................................ 191.000.00------1.00-------------------------------
.....................................................................................................................................................................CCTCCTCCAGCCTGTCCACG................................................................. 201.000.00------------------1.00-------------------
.....................................................................CCTGCCCCAGATCCTGTCA.................................................................................................................................................................. 191.000.00------------1.00-------------------------
....................................................................CCCTGCCCCAGATCCTGGG................................................................................................................................................................... 191.000.00---1.00----------------------------------
.................................................................................................................................................................GCTCCCTCCTCCAGCCTGGGGC................................................................... 221.000.00---1.00----------------------------------
...........................................................................................................................TGCAGGGCCCTGGGC................................................................................................................ 1501.001.00------------------------1.00-------------
......................................................................................................................................................................CTCCTCCAGCCTGTCCAAA................................................................. 191.000.00------1.00-------------------------------
..........................................................................................................................................................ACTCCCTGCTCCCTCCACG............................................................................. 191.000.00-1.00------------------------------------
...............................................................................................GGAGGGGGCTGAGCCAGCGAT...................................................................................................................................... 211.000.00--1.00-----------------------------------
..............................................................................................................................................................CCTGCTCCCTCCTCCACGAG........................................................................ 201.000.00-1.00------------------------------------
...................................................................................................................................................................TCCCTCCTCCAGCCTGAA..................................................................... 181.000.00--------------1.00-----------------------
......................................................................................................................................................TCCAACTCCCTGCTCCATCG................................................................................ 201.000.00----------------------1.00---------------
.......................................................GGGACCAGAGGGCTCA................................................................................................................................................................................... 1650.400.40------------------------------------0.200.20
.........................................................CAGGGACCAGAGGGCT................................................................................................................................................................................. 1670.140.14------------------------------------0.14-