ID: uc002ieh.2_intron_5_0_chr17_41891730_r.3p
GENE: (12)
chr17:41891680-41891929-


(1)
AGO1.ip 		(1)
AGO3.ip 		(3)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(8)
HEART 		(4)
HELA 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
AGTTTGTGAATGCAGGGGTCACCCTTTCATCTTATTATTGTATTTCCTGAACAACCTCTTCCAGTAGCAGGAGGAGGTTGGGAGAAGTCAGTGGGACTCAGTCCCATCTCCAGGTCTGGCCAGGTGGGAAAAGTCTCTACTGGGAGATCCTGGGACAACTGGGACAAATGCCATGGTGTCCCTCTGCCCCTCCTCCCAAGCTGGTCTTCGGAGGAGCTTCCGGCTGGGCTGTAGGGAGAGACTGGGTGGC
...................................................(((((((((((.......))))))))))).......(((((((((((...(((((((((((....)))..))))))))..)))).)))))))....((((((.....))))))......................................................................................
..................................................51.................................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)
...........................................................................................................................................CTGGGAGATCCTGGGACAACTGG........................................................................................23113.0013.002.00-------2.00--1.00-----1.00----------1.00-1.001.001.001.001.00-------1.00-
...........................................................................................................................................CTGGGAGATCCTGGGACAACTG.........................................................................................2217.007.001.00--3.00--------1.00-1.00---------------------1.00-------
..........................................................................................................................................ACTGGGAGATCCTGGGACAACTG.........................................................................................2314.004.003.00---1.00---------------------------------------
...........................................................................................................................................CTGGGAGATCCTGGGACAACT..........................................................................................2114.004.00-----2.001.001.00------------------------------------
...........................................................................................................................................CTGGGAGATCCTGGGACAACTGA........................................................................................2313.007.00----1.00------1.00-------------------------1.00------
.......................................................................................................................................................................................................GCTGGTCTTCGGAGGAGCTTCCGGT..........................252.000.00---------2.00----------------------------------
..........................................................................................................................................ACTGGGAGATCCTGGGACAACTGGGA......................................................................................2612.002.00----------1.00--------------1.00------------------
............................................................................................................................................TGGGAGATCCTGGGACAACTGGGAC.....................................................................................2512.002.00-------1.00-------------------------------1.00----
..........................................................................................................................................ACTGGGAGATCCTGGGACAACTGT........................................................................................2412.004.00----------1.00--1.00------------------------------
..........................................TTTCCTGAACAACCTCTTCCAGTAGTT.....................................................................................................................................................................................271.000.00----------------1.00---------------------------
..........................................................................................................................................ACTGGGAGATCCTGGGACAACTGGGTT.....................................................................................271.000.00---------------1.00----------------------------
...........................................................................................................................................CTGGGAGATCCTGGGACAACTGGGT......................................................................................251.000.00----1.00---------------------------------------
...........................................................................................................................................CTGGGAGATCCTGGGACACCTG.........................................................................................221.000.00--------------------------1.00-----------------
..........................................TTTCCTGAACAACCTCTTCCAGA.........................................................................................................................................................................................231.000.00--------------------------------------1.00-----
............................................................................................................................................TGGGAGATCCTGGGACAACT..........................................................................................2011.001.00--------------------1.00-----------------------
..........................................................TTCCAGTAGCAGGAGGAGGTTGG.........................................................................................................................................................................2311.001.00-------------------1.00------------------------
..............................................................AGTAGCAGGAGGAGGCAG..........................................................................................................................................................................181.000.00-----------------------1.00--------------------
............................................................................................................................................TGGGAGATCCTGGGACAACTGGGACT....................................................................................2611.002.00-------------1.00------------------------------
...........................................................................................................................................CTGGGAGATCCTGGGACAACTGGGACT....................................................................................271.000.00----------------------------------------1.00---
..........................................TTTCCTGAACAACCTCTTCCAGTTA.......................................................................................................................................................................................2511.001.00------1.00-------------------------------------
...............................................................................................................AGGTCTGGCCAGGTGGGAAAAGCCTC.................................................................................................................261.000.00-1.00------------------------------------------
....................................................................AGGAGGAGGTTGGGAGAAGTCAGTGGGATTC.......................................................................................................................................................311.000.00-1.00------------------------------------------
..........................................TTTCCTGAACAACCTCTTCCAGT.........................................................................................................................................................................................2311.001.00------------------------1.00-------------------
...........................................................................................................................................CTGGGAGATCCTGGGACAACTGGA.......................................................................................2411.0013.001.00-------------------------------------------
..........................................TTTCCTGAACAACCTCTTCCAGC.........................................................................................................................................................................................231.000.00------------1.00-------------------------------
.............................................................................................................................................................................................................CTTCGGAGGAGCTTCCGGC..........................1911.001.00------------------1.00-------------------------
...................................................................CAGGAGGAGGTTGGGAGAAGTCAGCGGG...........................................................................................................................................................281.000.00-1.00------------------------------------------
.......................................................................................................................................................................................................................................TAGGGAGAGACTGGGCT..171.000.00-----------------------------------------1.00--
..................................................................................................................................................................................TCCCTCTGCCCCTCCTCCCAAGT.................................................231.000.00--1.00-----------------------------------------
....................................................................................................................................................................................CCTCTGCCCCTCCTCCCAAG..................................................2011.001.001.00-------------------------------------------
..............................................................AGTAGCAGGAGGAGGACTC.........................................................................................................................................................................191.000.00-----------------------------1.00--------------
...............................................................................................................................................................................................................................CTGGGCTGTAGGGAGTT..........171.000.00----------------------1.00---------------------
................................................................................................................................................................................................................................TGGGCTGTAGGGAGA...........1560.170.17--------------0.17-----------------------------

Antisense strand
AGTTTGTGAATGCAGGGGTCACCCTTTCATCTTATTATTGTATTTCCTGAACAACCTCTTCCAGTAGCAGGAGGAGGTTGGGAGAAGTCAGTGGGACTCAGTCCCATCTCCAGGTCTGGCCAGGTGGGAAAAGTCTCTACTGGGAGATCCTGGGACAACTGGGACAAATGCCATGGTGTCCCTCTGCCCCTCCTCCCAAGCTGGTCTTCGGAGGAGCTTCCGGCTGGGCTGTAGGGAGAGACTGGGTGGC
...................................................(((((((((((.......))))))))))).......(((((((((((...(((((((((((....)))..))))))))..)))).)))))))....((((((.....))))))......................................................................................
..................................................51.................................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)
....TGTGAATGCAGGGGTCACCTG................................................................................................................................................................................................................................. 212.000.00--2.00-----------------------------------------
.............................................................................................................................................................................................................................GGCTGGGCTGTAGGGATGG.......... 191.000.00-1.00------------------------------------------
...................................................................................................................................................TCCTGGGACAACTGGGAT..................................................................................... 181.000.00---------------------1.00----------------------
..................................................................................................................................................ATCCTGGGACAACTGGGAAAA................................................................................... 211.000.00---------------------------1.00----------------
..............................................................................................................................................................................GGTGTCCCTCTGCCCCCGT......................................................... 191.000.00-------------------------------------------1.00
....................................................................................................................................................CCTGGGACAACTGGGCAA.................................................................................... 181.000.00-----------------------------------1.00--------