ID: uc002hgg.2_intron_34_0_chr17_29588876_f.5p
GENE: (35)
chr17:29588826-29589075+


(1)
AGO1.ip OTHER.mut 		(1)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(16)
CELL-LINE 		(15)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TGGTCCAGCCTTAACCTTACCAGTTCAAAGTTTGAGGAATTTATGACTAGGTAAAGTACAACCTTGAAATAGTTGATTGCTTTCTTTTTGGTTGAGAAGGAGAGTTTGCCACCAGGCCACTTGTTAGATATGATAGAAGACTATGAGGAAAGATGTATTTAATAATCACATTGCCATGTTTGGGGAATCCAACTATATATTATTTATATATATAGGGTGTGTTTTATTTTATATATTGATTGTCATAACA
.............................................................(((..((((((((....(((((((((((.....)))))))))))..(((....)))...((((((....))))))..))))))..((...((((((((....))).))))).))...))..))).................................................................
..................................................51......................................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR040042(GSM532927)
G428N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532875(GSM532875)
G547N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................ATCACATTGCCATGTATTT...................................................................1922.000.001.003.007.001.00----1.001.00--1.00-1.00-------1.00------1.001.001.00---1.00------------------------1.00-------
....................................................................................................................................................................ATCACATTGCCATGTATT....................................................................1822.000.003.003.004.001.00-2.00---2.00---1.00-1.00------------------1.00-1.00-----------------1.00----1.00-1.00------
....................................................................................................................................................................ATCACATTGCCATGTGTTA...................................................................1920.000.0012.008.00------------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTATTA...................................................................1915.000.004.002.002.001.00-2.001.00-----1.00-------------1.00------1.00----------------------------------
....................................................................................................................................................................ATCACATTGCCATGTGTTT...................................................................1913.000.004.009.00------------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTGTT....................................................................189.000.006.002.001.00-----------------------------------------------------------------
...................................................................................................................................................................AATCACATTGCCATGGATT....................................................................195.000.00-------------------------1.00-1.00-------------------------1.00-1.00------1.00-----
..........................................................CAACCTTGAAATAGTAGCG.............................................................................................................................................................................194.000.00-------3.00------------------------------------1.00-----------------------
................................TGAGGAATTTATGACAGTG.......................................................................................................................................................................................................193.000.00----------3.00---------------------------------------------------------
..........................AAAGTTTGAGGAATTTATGACTAGGCA.....................................................................................................................................................................................................272.000.00-------------------2.00------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTT...................................................................192.000.00--------2.00-----------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTTCG.................................................................212.000.00------------------1.00---1.00---------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTCTT....................................................................182.000.00------1.00------------------------------1.00------------------------------
....................................................................................................................................................................ATCACATTGCCATGTAAA....................................................................182.000.001.00-------------1.00-----------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTATAA...................................................................192.000.00--1.00-1.00---------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTTTC.................................................................212.000.00---1.00------------------------------------------1.00---------------------
.............................GTTTGAGGAATTTATGACTAGGC......................................................................................................................................................................................................232.000.00-----------------2.00--------------------------------------------------
..........................AAAGTTTGAGGAATTTATGACTAGGCATA...................................................................................................................................................................................................292.000.00---------------------2.00----------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTCAAC...................................................................191.000.00----1.00---------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTAAAA...................................................................191.000.001.00-------------------------------------------------------------------
...........................AAGTTTGAGGAATTTATGACTAGG.......................................................................................................................................................................................................2411.001.00-----------------------------------------1.00--------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTTCT.................................................................211.000.00-------------------------------------------1.00------------------------
............................AGTTTGAGGAATTTATGACTAGGCATA...................................................................................................................................................................................................271.000.00----------------------------------------------------------1.00---------
....................................................................................................................................................................ATCACATTGCCATGTTTTTCC.................................................................211.000.00--------------------------------1.00-----------------------------------
....................................................................................................................................................................ATCACATTGCCATGTCCAC...................................................................191.000.00------1.00-------------------------------------------------------------
...........................AAGTTTGAGGAATTTATGACT..........................................................................................................................................................................................................2111.001.00---------------------------------------------------------------1.00----
....................................................................................................................................................................ATCACATTGCCATGTTTTTCA.................................................................211.000.00------------------1.00-------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTAGAG...................................................................191.000.001.00-------------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTACAG...................................................................191.000.00----------------------------------------1.00---------------------------
........................TCAAAGTTTGAGGAATTTATGACTAGGC......................................................................................................................................................................................................281.000.00-----------------------------------------------------------------1.00--
....................................................................................................................................................................ATCACATTGCCATGTTTTAA..................................................................201.000.00----------------------------------------------------------------1.00---
....................................................................................................................................................................ATCACATTGCCATGTATG....................................................................181.000.00----1.00---------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTATTC...................................................................191.000.00--1.00-----------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTCTTC..................................................................201.000.00--1.00-----------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTATA.................................................................211.000.00---1.00----------------------------------------------------------------
............................................................................TTGCTTTCTTTTTGGTTGATCGG.......................................................................................................................................................231.000.00----------------1.00---------------------------------------------------
................................TGAGGAATTTATGACTAG........................................................................................................................................................................................................1811.001.00-----------1.00--------------------------------------------------------
..............................TTTGAGGAATTTATGACTAGGCATC...................................................................................................................................................................................................251.000.00---------------------------------------------------------1.00----------
...................................................................................................................................................................AATCACATTGCCATGTCT.....................................................................181.000.00----1.00---------------------------------------------------------------
...............................................................................................................................................................................................ACTATATATTATTTATATTCAG.....................................221.000.00--------------------1.00-----------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTATTA..................................................................201.000.00----------------------------1.00---------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTC...................................................................191.000.00---------------------------------------------1.00----------------------
..............................................................................................................................................................................................AACTATATATTATTTATATTCAT.....................................231.000.00--------------------1.00-----------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTGTA....................................................................181.000.001.00-------------------------------------------------------------------
....................CAGTTCAAAGTTTGAGGAATT.................................................................................................................................................................................................................2111.001.00---------------------------------------1.00----------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTT....................................................................181.000.00-------------1.00------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTGTAA...................................................................191.000.00-1.00------------------------------------------------------------------
.............................................................................TGCTTTCTTTTTGGTTCAGG.........................................................................................................................................................201.000.00--------------------------------------------------------1.00-----------
........................................................................................TGGTTGAGAAGGAGAGTTTGCCACCAGGCC....................................................................................................................................3011.001.00----------------1.00---------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTAT.....................................................................171.000.00----------------------------------------------------1.00---------------
..................................AGGAATTTATGACTAG........................................................................................................................................................................................................1611.001.00-----------1.00--------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTGTGT...................................................................191.000.001.00-------------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTATC....................................................................181.000.00------1.00-------------------------------------------------------------
.................................GAGGAATTTATGACTAG........................................................................................................................................................................................................1711.001.00-----------1.00--------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTTA..................................................................201.000.00--------------------------------------------------1.00-----------------
...................................................................................................................................................................AATCACATTGCCATGGACT....................................................................191.000.00------------------------------------------------1.00-------------------
.................TACCAGTTCAAAGTTTGAGGA....................................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00--------------------
...................................................................................................................................................................AATCACATTGCCATGGAAA....................................................................191.000.00--1.00-----------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTATGG...................................................................191.000.00--1.00-----------------------------------------------------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTA...................................................................191.000.00-------------------------------------------------1.00------------------
....................................................................................................................................................................ATCACATTGCCATGTTTTTC..................................................................201.000.00---------------------------------------------------1.00----------------
..........................................................................................................................GTTAGATATGATAGAC................................................................................................................161.000.00--------------------------------------1.00-----------------------------
....................................................................................................................................................................ATCACATTGCCATGTCAA....................................................................181.000.00----1.00---------------------------------------------------------------
.........................................................................................................................TGTTAGATATGATAGAAGACT............................................................................................................2130.330.33------------------------------------------------------------------0.33-

Antisense strand
TGGTCCAGCCTTAACCTTACCAGTTCAAAGTTTGAGGAATTTATGACTAGGTAAAGTACAACCTTGAAATAGTTGATTGCTTTCTTTTTGGTTGAGAAGGAGAGTTTGCCACCAGGCCACTTGTTAGATATGATAGAAGACTATGAGGAAAGATGTATTTAATAATCACATTGCCATGTTTGGGGAATCCAACTATATATTATTTATATATATAGGGTGTGTTTTATTTTATATATTGATTGTCATAACA
.............................................................(((..((((((((....(((((((((((.....)))))))))))..(((....)))...((((((....))))))..))))))..((...((((((((....))).))))).))...))..))).................................................................
..................................................51......................................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR040042(GSM532927)
G428N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR191464(GSM715574)
112genomic small RNA (size selected RNA from . (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM532875(GSM532875)
G547N. (cervix)		GSM532871(GSM532871)
G652N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................................................TATTTATATATATAGGG................................. 172.000.00------------------------1.00-----------------1.00-------------------------
......................................................................................................................................................................................................................GGGTGTGTTTTATTTTACAAA............... 211.000.00---------------1.00----------------------------------------------------
.....................................................................................................................................................AAGATGTATTTAATAAGAT.................................................................................. 191.000.00-----------------------1.00--------------------------------------------
.........................................................................TGATTGCTTTCTTTTTGAA.............................................................................................................................................................. 191.000.00-----------------------1.00--------------------------------------------
.........................................CTTTACCTAGTCATA.................................................................................................................................................................................................. 1580.120.12-------------------------------------------------------------------0.12