ID: uc002fml.1_intron_5_0_chr16_88951678_r.3p
GENE: (5)
chr16:88951628-88951877-


(5)
B-CELL
(8)
BRAIN
(40)
BREAST
(4)
CELL-LINE
(2)
CERVIX
(1)
HELA
(5)
LIVER
(1)
OTHER
(11)
SKIN
(1)
TESTES

Sense strand
CATGGGCCCCGGCAGAGGGGCAGAGAGTGGGGGCGCCGGGCTGGGCTTCCCGGGGCTGGTGTTTTGCTCCGTGTTTCTGTCTCGCCCTTACGTGTCCTCTTTCTCTCTGCCCTTGCCTGTCTGCCTCTCACCCCACCTGCACCTCTGTCCCCGGTTCATCCTATGTCCACTGCCCTCGCCCCACCTGCTCTTGGGGCTAGGACCAAAGAGAACGGGTCAGACCGCGACCCGCTGCACCCCGAGCACCTCA
.........................................................................................................................................((.(((.........))).))............................................................................................
....................................................................................................................117...............................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................GTCCCCGGTTCATCCGG.......................................................................................17230.003.505.501.503.001.501.50--2.00-2.00----1.50--0.500.50-1.00----1.000.500.500.501.00-0.50--0.50---0.50---------0.50-0.50-0.50----0.50--0.50------0.500.50-0.50--0.50-----
..................................................................................................................................................GTCCCCGGTTCATCCGGGT.....................................................................................19229.003.501.503.500.501.002.00-2.50-2.00----1.50-1.50-0.500.50---1.00---0.500.50---0.50--0.50---------0.50-0.500.50-0.50---0.50-0.500.50-0.500.50-0.500.50--0.500.50--0.50-0.500.50-0.500.50---
..................................................................................................................................................GTCCCCGGTTCATCCGGG......................................................................................1824.003.500.501.00-1.00-------------0.50--------------------0.50------0.50---------------------------------
..................................................................................................................................................GTCCCCGGTTCATCC.........................................................................................1523.503.50--1.00-------------1.50-----------0.50--------------0.50-----------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCG........................................................................................1623.003.50-----------------------------------1.00---------------0.50--0.50--------0.500.50--------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGG..................................1812.002.00-----1.00------------------------------------1.00------------------------------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGGTTT...............................211.000.00--------------------------------1.00----------------------------------------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGGTCA...............................2111.001.00-----1.00-------------------------------------------------------------------------
...................................................................................................................................................TCCCCGGTTCATCCTGC......................................................................................171.000.00-----------1.00-------------------------------------------------------------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGGTC................................2011.001.00-------------------------------------1.00-----------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGAA.....................................................................................1921.003.50-------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGGTCAGAC............................2411.001.00------------------------------1.00------------------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGGG.....................................................................................1921.003.50------0.50------0.50-----------------------------------------------------------------
..............................GGGCGCCGGGCTGGGTTGG.........................................................................................................................................................................................................191.000.00-----------1.00-------------------------------------------------------------------
.......................................GCTGGGCTTCCCGGGGCCTTC..............................................................................................................................................................................................211.000.00-------------------1.00-----------------------------------------------------------
.........................................................................................................................TGCCTCTCACCCCACTCTG..............................................................................................................191.000.00---------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................................ACCAAAGAGAACGGGGCA...............................181.000.00----------------------------------------1.00--------------------------------------
......................................................................................................................................................................................................AGGACCAAAGAGAACGGGTCAGA.............................2311.001.00-----1.00-------------------------------------------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGCT.....................................................................................1920.503.50---------0.50---------------------------------------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGA......................................................................................1820.503.50------------------0.50------------------------------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGGC.....................................................................................1920.503.50--------0.50----------------------------------------------------------------------
..................................................................................................................................................GTCCCCGGTTCATCCGGT......................................................................................1820.503.50---0.50---------------------------------------------------------------------------

Antisense strand
CATGGGCCCCGGCAGAGGGGCAGAGAGTGGGGGCGCCGGGCTGGGCTTCCCGGGGCTGGTGTTTTGCTCCGTGTTTCTGTCTCGCCCTTACGTGTCCTCTTTCTCTCTGCCCTTGCCTGTCTGCCTCTCACCCCACCTGCACCTCTGTCCCCGGTTCATCCTATGTCCACTGCCCTCGCCCCACCTGCTCTTGGGGCTAGGACCAAAGAGAACGGGTCAGACCGCGACCCGCTGCACCCCGAGCACCTCA
.........................................................................................................................................((.(((.........))).))............................................................................................
....................................................................................................................117...............................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577453(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)
SRR191425(GSM715535)
141genomic small RNA (size selected RNA from . (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................TAAGGGCGAGACAGAAACACGG................................................................................................................................................................ 2212.002.00----------2.00--------------------------------------------------------------------
...........................................................AGAAACACGGAGCAAAACA............................................................................................................................................................................ 1911.001.00------------1.00------------------------------------------------------------------
..................................................................TAAGGGCGAGACAGAAACACGGAG................................................................................................................................................................ 2411.001.00-----------------------------------------1.00-------------------------------------
..........................................................GGCGAGACAGAAACACGGAGCAAAACAC.................................................................................................................................................................... 2811.001.00---------------------------------------1.00---------------------------------------
...............................................................................................................................................................................TCGCCCCACCTGCTCTCTTC....................................................... 201.000.00------------------------------------1.00------------------------------------------
...................................................................AGGGCGAGACAGAAACACGGA.................................................................................................................................................................. 2111.001.00------------1.00------------------------------------------------------------------
............................................................................................................................................ACCGGGGACAGAGGT............................................................................................... 1511.001.00-----------------------1.00-------------------------------------------------------
.........................................................................................................................................ATGAACCGGGGACAGAGGTGCA........................................................................................... 2211.001.00---------------------------------1.00---------------------------------------------
.................................................................................................................................ACAGAGGTGCAGGTGGGGT...................................................................................................... 1911.001.00------------------------1.00------------------------------------------------------
.........................................................................................................................................CCGGGGACAGAGGTGCA................................................................................................ 1730.330.33----------------------------------------------------------------------------0.33--
.............CCACTCTCTGCCCCTCT............................................................................................................................................................................................................................ 1750.200.20-----------------------------------------------------------------------------0.20-
........CTGCCCCTCTGCCGG................................................................................................................................................................................................................................... 1590.110.11------------------------------------------------------------------------------0.11