ID: uc002ews.3_intron_15_0_chr16_69201089_f.3p
GENE: (16)
chr16:69202524-69202773+


(1)
AGO3.ip 		(1)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TCTAAAAAATAAAAAAAAAAGCTTTTATGCATTCCAACTATTTTGAGTCCCAGGGCAGGAAAGATTGTCAAGAAATTTAAATCATTTGAGCCTTGAACTAGGCTAACCTTTTAGCTTAGATGGTGTCTACCTACAGTCAGTTCTTTCAGGACTAGCCCTGGATCCTAAGTCCTGATAGAATAATTATCATCCCTCTGCAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGA
..................................................((((((..(((.((((...((....))..)))).)))..))))))...........................................................................................................................................................
..................................................51...............................................100....................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR343336SRR343335
.........................................................GGAAAGATTGTCAAGACATT.............................................................................................................................................................................2019.000.0010.007.00-2.00-------------------------------
.........................................................GGAAAGATTGTCAAGACA...............................................................................................................................................................................1812.000.008.003.00--1.00------------------------------
..........................................................GAAAGATTGTCAAGACATT.............................................................................................................................................................................197.000.003.002.00-1.001.00------------------------------
.........................................................GGAAAGATTGTCAAGACATA.............................................................................................................................................................................206.000.003.002.00-1.00-------------------------------
..............................................................................................................................................................................................................................TGGATGAAAGAACACTCGTGGCA.....2314.004.00--4.00--------------------------------
................................................................................................................................................................................................................CTTCATGGATCTTTTGGATGAAAGAACAC.............2912.002.00--------------1.00--1.00-----------------
..............................................................................................................................................................................................................................TGGATGAAAGAACACTCT..........182.000.00-----2.00-----------------------------
..................................................................................................................................................................................................................TCATGGATCTTTTGGATGAAAGAA................2412.002.00----------2.00------------------------
.........................................................GGAAAGATTGTCAAGATA...............................................................................................................................................................................182.000.002.00----------------------------------
.....................CTTTTATGCATTCCATTG...................................................................................................................................................................................................................182.000.00------2.00----------------------------
...........................................................................................................................................................................................................CTACTCTTCATGGATCTTTTGG.........................2211.001.00---------------1.00-------------------
............................................................................................................................................................................................................................TTTGGATGAAAGAACACTCGTGGCA.....2511.001.00--------------------------1.00--------
..........................................................GAAAGATTGTCAAGACAT..............................................................................................................................................................................181.000.00----------------------------1.00------
....................................................................................................................................................................................................................ATGGATCTTTTGGATGAAAGAA................2211.001.00------------1.00----------------------
......................................................................................TGAGCCTTGAACTAGGG...................................................................................................................................................171.000.00------------------------1.00----------
.................................................................................................................................................................ATCCTAAGTCCTGATTGG.......................................................................181.000.00-------------------1.00---------------
....................................................................................................................................................................................................................ATGGATCTTTTGGATGAAAGAACA..............2411.001.00-------------------------1.00---------
.......................................................................................................................................GTCAGTTCTTTCAGGACTAG...............................................................................................2011.001.00---------------------------1.00-------
.............................................................................................................................................................................................................................TTGGATGAAAGAACACTCGTGGC......2311.001.00------------------1.00----------------
.........................................................GGAAAGATTGTCAAGACAT..............................................................................................................................................................................191.000.00-1.00---------------------------------
..............................................................................................................................................................................................................................TGGATGAAAGAACACCC...........171.000.00-----------------------1.00-----------
..................................................................................................................................................................................................................................TGAAAGAACACTCGTGGC......1820.500.50------------------------------0.50----
............................................................AAGATTGTCAAGAAATT.............................................................................................................................................................................1730.330.33-------------------------------0.33---
.CTAAAAAATAAAAAAAAAAG.....................................................................................................................................................................................................................................2070.290.29--------------------------------0.140.14-

Antisense strand
TCTAAAAAATAAAAAAAAAAGCTTTTATGCATTCCAACTATTTTGAGTCCCAGGGCAGGAAAGATTGTCAAGAAATTTAAATCATTTGAGCCTTGAACTAGGCTAACCTTTTAGCTTAGATGGTGTCTACCTACAGTCAGTTCTTTCAGGACTAGCCCTGGATCCTAAGTCCTGATAGAATAATTATCATCCCTCTGCAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGA
..................................................((((((..(((.((((...((....))..)))).)))..))))))...........................................................................................................................................................
..................................................51...............................................100....................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR343336SRR343335
...AAAAAATAAAAAAAAAAGTAAG................................................................................................................................................................................................................................. 222.000.00--------1.00-------1.00------------------
.........................................................................................................................................................................................ATCATCCCTCTGCAGCTG............................................... 181.000.00--1.00--------------------------------
..................................................................................................................................................................................................CTGCAGCCTCTACTCTCACA.................................... 201.000.00----------------------1.00------------
...AAAAAATAAAAAAAAAACTCG.................................................................................................................................................................................................................................. 211.000.00-------------1.00---------------------
.......................................................................................................................................................................................................CATCCAAAAGATCCATGAAGAGTAGAGGC...................... 2911.001.00---------------------1.00-------------
..................................................................................................................................................................................................CTGCAGCCTCTACTCTCA...................................... 181.000.00--------------------1.00--------------
...AAAAAATAAAAAAAAAAGTTCC................................................................................................................................................................................................................................. 221.000.00---------1.00-------------------------
....AAAAATAAAAAAAAAAGCTTTACT.............................................................................................................................................................................................................................. 241.000.00-------1.00---------------------------
.CTAAAAAATAAAAAAAGGAG..................................................................................................................................................................................................................................... 201.000.00-------1.00---------------------------
...AAAAAATAAAAAAAAAAGCAAG................................................................................................................................................................................................................................. 221.000.00---------1.00-------------------------
...AAAAAATAAAAAAAAAAGTCG.................................................................................................................................................................................................................................. 211.000.00--------1.00--------------------------
.......................................................................................................................................................................................................CATGAAGAGTAGAGGC................................... 1620.500.50-----------------------------0.50-----
.CTTTTTTTTTTATTTTTTAG..................................................................................................................................................................................................................................... 2070.430.43-----------0.29-0.14---------------------
.....................TTGGAATGCATAAAAG..................................................................................................................................................................................................................... 1640.250.25------------0.25----------------------
.................................................................................................................................................CAGGGCTAGTCCTGA.......................................................................................... 1580.120.12----------------------------------0.12