| (1) BRAIN | (2) BREAST | (4) CELL-LINE | (1) CERVIX | (1) FIBROBLAST | (1) LIVER | (2) OTHER | (3) SKIN |
| GATCAGATCAATTTGGATGGAGTGCTGGGAACAAAAGGCTAATTGGAGTGAATTTAAGAGAGAACAGGAAAAAAGGAACTGGAGACTGGGTATAGATGACTCGAGGTATGTGCTGCAATAGGAGCAAGTGGAGGGAGATGCAGCGGGGCTGTAGCTGGAGGAGTGTGGGTTCTAGTGAGGGTTTTGTTTTGTTTTTTAAGATGGAGAAGTAACAGCATGTGTTTATCCTGATGGAAAGAGTCCAGTAGAG ....................................................................................((((((..((.((..(((.((.(((.((((........)))).)))........((((((...)))))).)).)))..)).))...)))))).......................................................................... ..................................................................................83...................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189786 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR343336 | SRR330890(SRX091728) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | TAX577742(Rovira) total RNA. (breast) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR343337 | SRR038852(GSM458535) QF1160MB. (cell line) | SRR330892(SRX091730) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191593(GSM715703) 62genomic small RNA (size selected RNA from t. (breast) | SRR040008(GSM532893) G727N. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTCTTG.................................................... | 21 | 5.00 | 0.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTTAAC................................................. | 24 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTCTGC.................................................... | 21 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................TGGAGTGAATTTAAGCTG............................................................................................................................................................................................. | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTCTCT................................................. | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTCTTA.................................................. | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTTCTT................................................. | 24 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTCTTC.................................................. | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTCAT................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTGC.................................................... | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTTCTC................................................. | 24 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................GGGTATAGATGACTCGAGG................................................................................................................................................ | 19 | 2 | 1.50 | 1.50 | - | - | - | - | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTCTGC.................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................TGCAGCGGGGCTGTAGCTGGAG.......................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................GATGCAGCGGGGCTGGCC................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..............................................................................................................................AGTGGAGGGAGATGCAGCGGGGCT.................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTAGGT.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTGCTT................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................TGGAGACTGGGTATAGATGACT..................................................................................................................................................... | 22 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................GTATGTGCTGCAATAGGAGCAAGTGGAGG.................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTCCCT................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTCTAGTGAGGGTTTTGTTTTGTTCTT...................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTCGTT.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTGGG................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................TGGAGGAGTGTGGGTTGTTT........................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTCCCA................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................AAGAGAGAACAGGAAAAAAGGAACT.......................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTTCAC................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTACAC................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTGTTC................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTAGG..................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTATTC.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................AACTGGAGACTGGGTACAGA.......................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .....GATCAATTTGGATGGAGTGCTGGGAAC.......................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTCC.................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGGGTTTTGTTTTGTTTTTTCAAC................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................TGTTTTGTTTTTTAAGATGGAGA........................................... | 23 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .............................................................................................................................................................................AGTGAGGGTTTTGTTTTGTTTTTT..................................................... | 24 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................GGAGTGCTGGGAACAAAAGGC................................................................................................................................................................................................................... | 21 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ........................................................................................................................GGAGCAAGTGGAGGGAGA................................................................................................................ | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTTTA..................................................... | 22 | 4 | 0.25 | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTTTGC.................................................... | 23 | 4 | 0.25 | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTTT...................................................... | 21 | 4 | 0.25 | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTTTATC................................................... | 24 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TGAGGGTTTTGTTTTGTTTTTAC.................................................... | 23 | 4 | 0.25 | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TGGATGGAGTGCTGGG............................................................................................................................................................................................................................. | 16 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GATCAGATCAATTTGGATGGAGTGCTGGGAACAAAAGGCTAATTGGAGTGAATTTAAGAGAGAACAGGAAAAAAGGAACTGGAGACTGGGTATAGATGACTCGAGGTATGTGCTGCAATAGGAGCAAGTGGAGGGAGATGCAGCGGGGCTGTAGCTGGAGGAGTGTGGGTTCTAGTGAGGGTTTTGTTTTGTTTTTTAAGATGGAGAAGTAACAGCATGTGTTTATCCTGATGGAAAGAGTCCAGTAGAG ....................................................................................((((((..((.((..(((.((.(((.((((........)))).)))........((((((...)))))).)).)))..)).))...)))))).......................................................................... ..................................................................................83...................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189786 | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR343336 | SRR330890(SRX091728) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | TAX577742(Rovira) total RNA. (breast) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR343337 | SRR038852(GSM458535) QF1160MB. (cell line) | SRR330892(SRX091730) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191593(GSM715703) 62genomic small RNA (size selected RNA from t. (breast) | SRR040008(GSM532893) G727N. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................CCCGCTGCATCTCCCTCCACTTG....................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............GATGGAGTGCTGGGAACTCGC...................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |