ID: uc002die.2_intron_8_0_chr16_21145776_r.5p
GENE: DNAH3(7)
chr16:21147445-21147694-


(2)
AGO2.ip
(2)
BREAST
(16)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(9)
SKIN
(1)
TESTES

Sense strand
CGTGCAGGAGAAGGAGAATGACTATTACTGTAGCCTCATGAAAAGCATCGGTAAGGCTGGTGGGCATAAAGGGGGCTGGGGAGCTTCTATGTAGAGGGCACCTTCTTTTTTATTTTTATTTTTGTAGAGACAAGGTCTTGCTTTGTTGCTCAGGCTGGTCTGGAACTCCTGGGCTCAAGCAATCCTCCCTCCTTAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGGCACCATGCCTGGCCTGGAAGGC
................................................................................................((.(((((..(((((((..........))))))).)))))))(((.(((..(((((((..(((.....)))))))))).)))))).....................................................................
..............................................................................................95.....................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................ACCTTCTTTTTTATTTTTTTTG.................................................................................................................................2230.000.0013.00-13.003.00--1.00--------------------------------
..........................................................................................................................................................CTGGTCTGGAACTCCTGGGCTCTG........................................................................246.000.00-------1.001.00-----1.00----------------1.00-1.001.00----
.....................................................................................................CTTCTTTTTTATTTTTATTTTTATTG...........................................................................................................................265.000.003.00-1.001.00-----------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTATTTTTTTTG...........................................................................................................................283.000.003.00--------------------------------------
...........................................................................................................................................................TGGTCTGGAACTCCTGGGCTCTG........................................................................233.000.00-------1.00---------------1.00-----1.00---------
.............................................................................................................................................................GTCTGGAACTCCTGGGCTCTG........................................................................213.000.00--------2.00------1.00-----------------------
.......................................................................................................TCTTTTTTATTTTTATTACG...............................................................................................................................203.000.00---3.00-----------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTTTCG.................................................................................................................................222.000.00--2.00------------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTTATT.................................................................................................................................222.000.00------2.00--------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTTTTT.................................................................................................................................222.000.001.00-1.00------------------------------------
..............................................................................................................................................................TCTGGAACTCCTGGGCTCAAGCAATCCTACT.............................................................311.000.00----1.00----------------------------------
.......................................................................................................................................................AGGCTGGTCTGGAACTCCTGTCG............................................................................231.000.00------------1.00--------------------------
....................................................................................................................................................CTCAGGCTGGTCTGGCGGT...................................................................................191.000.00----------------1.00----------------------
..................................................................................................................................................................................................................AGGATTACAGGCATGAGGCACGAT................241.000.00-------------1.00-------------------------
..................................................................................................CACCTTCTTTTTTATTTTTATTTTTTG.............................................................................................................................271.000.00--1.00------------------------------------
.........................................................................................................TTTTTTATTTTTATTTTTGTTACG.........................................................................................................................241.000.00---------1.00-----------------------------
......................................................................................................TTCTTTTTTATTTTTATTTTCAG.............................................................................................................................231.000.00------1.00--------------------------------
........................................................................................................................................................................................................................ACAGGCATGAGGCACCATGCCGGC..........241.000.00-1.00-------------------------------------
.........................................................................................................................................................................TGGGCTCAAGCAATCCTCCCTAA..........................................................231.000.00--------------------1.00------------------
...........................................................................................................................................................................................................AAGTGCTAGGATTACAGGCAAAAT.......................241.000.00----------1.00----------------------------
...................................................................................................ACCTTCTTTTTTATTTTTTTG..................................................................................................................................211.000.00--1.00------------------------------------
....................................................................................................CCTTCTTTTTTATTTTTATTTTTATTG...........................................................................................................................271.000.00----1.00----------------------------------
...................................................................AAAGGGGGCTGGGGACTGT....................................................................................................................................................................191.000.00----------------------------1.00----------
..................................................................................................................................................................GAACTCCTGGGCTCAAGCAATGTC................................................................241.000.00------------------1.00--------------------
.......................................................................................................TCTTTTTTATTTTTATTTTCAG.............................................................................................................................221.000.00---1.00-----------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTATTTTTTG.............................................................................................................................261.000.001.00--------------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTCTTG.................................................................................................................................221.000.00------1.00--------------------------------
......................................................................................................TTCTTTTTTATTTTTATTTTTCAAC...........................................................................................................................251.000.00---1.00-----------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTGTG..................................................................................................................................211.000.001.00--------------------------------------
...................................................................................................ACCTTCTTTTTTATTTTTATTTTTTTG............................................................................................................................271.000.00--1.00------------------------------------
.......................................................................................................................................................AGGCTGGTCTGGAACTCCGGA..............................................................................211.000.00-------------------1.00-------------------
.........................................................................................................................................................................................................................................TGCCTGGCCTGGAAGGAC181.000.00----1.00----------------------------------
...................................................................................................ACCTTCTTTTTTATTTTCATG..................................................................................................................................211.000.001.00--------------------------------------
.........................TACTGTAGCCTCATGAAAA..............................................................................................................................................................................................................1911.001.00---------------------------1.00-----------
.......................................................................................................TCTTTTTTATTTTTATTTTTGTTATC.........................................................................................................................261.000.00-1.00-------------------------------------
...................................................................................................................................................................................................................GGATTACAGGCATGAGGCA....................1901.001.00--------------------------------1.00------
.....................................................................................................CTTCTTTTTTATTTTTATATT................................................................................................................................211.000.00--1.00------------------------------------
.....................................................................................................CTTCTTTTTTATTTTTATTTTTAAG............................................................................................................................251.000.00--1.00------------------------------------
....................................CATGAAAAGCATCGG.......................................................................................................................................................................................................1520.500.50-----------------------------------0.50---

Antisense strand
CGTGCAGGAGAAGGAGAATGACTATTACTGTAGCCTCATGAAAAGCATCGGTAAGGCTGGTGGGCATAAAGGGGGCTGGGGAGCTTCTATGTAGAGGGCACCTTCTTTTTTATTTTTATTTTTGTAGAGACAAGGTCTTGCTTTGTTGCTCAGGCTGGTCTGGAACTCCTGGGCTCAAGCAATCCTCCCTCCTTAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGGCACCATGCCTGGCCTGGAAGGC
................................................................................................((.(((((..(((((((..........))))))).)))))))(((.(((..(((((((..(((.....)))))))))).)))))).....................................................................
..............................................................................................95.....................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................TTGCTTTGTTGCTCAGGCTGGTCTGGAACTTAA................................................................................ 334.000.00-----4.00---------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTCAGGAC..................................................................... 292.000.00-2.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTCAAGCAATGG................................................................. 332.000.00-2.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGGCC.......................................................................... 242.000.00-2.00-------------------------------------
................................................................................................................TTTTTATTTTTGTAGACTTG...................................................................................................................... 202.000.00-----------2.00---------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTGGAC....................................................................... 272.000.00-2.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGGGC.......................................................................... 242.000.00-2.00-------------------------------------
................................................................................................................................................................TGGAACTCCTGGGCTCAAGCAATCCTCAGG............................................................ 302.000.00---------2.00-----------------------------
.........................................................................................................................................TTGCTTTGTTGCTCAGGCTGGTCTGGATACA.................................................................................. 311.000.00--------------------------1.00------------
......................................................................................................................................................................................TCCTCCCTCCTTAGCCTGGG................................................ 201.000.00----1.00----------------------------------
..................................................................................................................................................................................................AGCCTCCCAAAGTGCTAGGATTTTA............................... 251.000.00----------------------1.00----------------
.......................................................................................................................................................................CCTGGGCTCAAGCAATCCTCCCTCCTCCGC..................................................... 301.000.00-1.00-------------------------------------
................................................................................................................................................................................AGGAGGGAGGATTGCTT......................................................... 1701.001.00-----------------1.00---------------------
..........................................................................................................................................TGCTTTGTTGCTCAGGCTGGTCTGGACTAC.................................................................................. 301.000.00----------1.00----------------------------
........................................................................................................................................................................CTGGGCTCAAGCAATCCTCCCTCTG......................................................... 251.000.00-1.00-------------------------------------
...........................................................................................................................................................................AAGGAGGGAGGATTGCTTGAGCC........................................................ 2301.001.00-------------------------1.00-------------
.........................................................................................................................................AGACCAGCCTGAGCAACAAAGCAA......................................................................................... 2401.001.00------------------------1.00--------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGGGCC......................................................................... 251.000.00-1.00-------------------------------------
..................................................................................................................................................TGCTCAGGCTGGTCTGGAACTCAGG............................................................................... 251.000.00-------1.00-------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTCAGAGC..................................................................... 291.000.00-1.00-------------------------------------
.....................................................................................................................................................................................ATCCTCCCTCCTTAGGACG.................................................. 191.000.00---------------------1.00-----------------
.........................................................................................................................................................GCTGGTCTGGAACTCCTGGCC............................................................................ 211.000.00-1.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGC............................................................................. 211.000.00-1.00-------------------------------------
...........................................................................................................................................CCAGACCAGCCTGAGCAACAAAGC....................................................................................... 2451.001.00-----0.40----0.60----------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTCGAG....................................................................... 271.000.00-1.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGCC............................................................................ 221.000.00-1.00-------------------------------------
....................................................................................................................................................................ACTCCTGGGCTCAAGCAATCCAAA.............................................................. 241.000.00------------------------------1.00--------
....................................................................................................................................................................ACTCCTGGGCTCAAGCAATCCTCCCTCC.......................................................... 281.000.00----1.00----------------------------------
......................................................................................................................................................................TCCTGGGCTCAAGCAATCCTCCCTCCTATCC..................................................... 311.000.00----1.00----------------------------------
.........................................................................................................................................................................TGGGCTCAAGCAATCCTCCCTCCTAGCG..................................................... 281.000.00-1.00-------------------------------------
..........................................................................................................................................TGCTTTGTTGCTCAGGCTGGTCTGGACTA................................................................................... 291.000.00------------1.00--------------------------
......................................................................................................................................................................TCCTGGGCTCAAGCAATCCTCCCTACCC........................................................ 281.000.00-1.00-------------------------------------
........................................................................................................................................................GGCTGGTCTGGAACTCCTGGGCTCAAGCAGGAC................................................................. 331.000.00----1.00----------------------------------
.....................................................................................................................................................................CTCCTGGGCTCAAGCAATCCTCCCTCCTCCCG..................................................... 321.000.00----1.00----------------------------------
.........................................................................................................................................TTGCTTTGTTGCTCAGGCTGGTCTGGAACTC.................................................................................. 311.000.00-----1.00---------------------------------
.........................................................................................................................................TCCAGACCAGCCTGAGCAACAAAGCAA...................................................................................... 2730.330.33------------------------------------0.33--
..........................................................................................................................................CCAGACCAGCCTGAGCAACAAAGCA....................................................................................... 2540.250.25----------0.25----------------------------
...............................................................................................................................CTGAGCAACAAAGCAAGACCTTGTCT................................................................................................. 2670.140.14-------------------------------------0.14-
............................................................................................................................................CCAGACCAGCCTGAGCAACAAAG....................................................................................... 2370.140.14-----0.14---------------------------------
...................................................................................................................................GCCTGAGCAACAAAGCAAGACCTT............................................................................................... 2490.110.11--------------------------------------0.11