ID: uc002cwc.1_intron_1_0_chr16_4383521_f.3p
GENE: GLIS2(2)
chr16:4384602-4384851+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(4)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
XRN.ip

Sense strand
ACCCTAATCTAGTGTGACCTCATGTTAACTTGATTACATCTGCAAAGATCCTAGTTCCAAATAAGGCCACATGCACAGGTAGGGGCTGGGGAGAAGAGGACCTGAATGTCTCTGTTTGGGGACACCATTCAGTCCACTACCGATGGGACGGGGGGCTCTGGGCCAGCAGGACCTTGACTAGCCCTCCCCTCGCACCCCAGGACTTCCAGCCACTGCGCTATTTGGATGGTGTCCCCAGCTCCTTCCAGTT
.......................................................................(((...(((((((((((((....((.....))...(((((((....)))))))...)))))))).)))))..(((..((((....))))..))))))..................................................................................
.....................................................................70...................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040019(GSM532904)
G701T. (cervix)
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGCCAGT...................................................................................2517.000.005.001.00--3.002.00-----1.00--1.00--1.00-------1.00------1.00----1.00-
...............................................................................................................................................TGGGACGGGGGGCTCTGGGCCAGT...................................................................................2415.002.00-1.00----1.001.00----------------1.00-----1.00--------
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGCC......................................................................................2215.005.00--5.00------------------------------------
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGC.......................................................................................2113.003.002.00--------1.00-----------------------------
...............................................................................................................................................TGGGACGGGGGGCTCTGGGCCAGA...................................................................................2412.002.00-------------------1.00-------1.00-----------
.............................................................................................................................................GATGGGACGGGGGGCTCTGGGCCTTAT..................................................................................272.000.002.00--------------------------------------
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGCCA.....................................................................................2312.002.00-------1.001.00------------------------------
...............................................................................................................................................TGGGACGGGGGGCTCTGGGCCAG....................................................................................2312.002.00---1.00-----------------------------1.00-----
.............................................................................................................................................GATGGGACGGGGGGCTCTGGGCCAAT...................................................................................262.000.00---2.00-----------------------------------
.............................................................................................................................................GATGGGACGGGGGGCTCTGGGCCAGT...................................................................................262.000.00-2.00-------------------------------------
.............................................................................................................................................GATGGGACGGGGGGCTCTGGGCCT.....................................................................................241.000.00------------------------------------1.00--
............................................................................................................................................................TCTGGGCCAGCAGGACCTTGACT.......................................................................2311.001.00--------------------1.00------------------
..........................................................................ACAGGTAGGGGCTGGTC...............................................................................................................................................................171.000.00-----------------------------1.00---------
...................................................................................................................................................................................AGCCCTCCCCTCGCACCCCAGT.................................................221.000.00---------------------1.00-----------------
.......................................................................................GGGGAGAAGAGGACCAGGC................................................................................................................................................191.000.00---------------1.00-----------------------
...............................................................................TAGGGGCTGGGGAGAAGTCTG......................................................................................................................................................211.000.00----------------------------------1.00----
..............................................................................................................................................ATGGGACGGGGGGCTCTGG.........................................................................................1911.001.00------1.00--------------------------------
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGCCAAT...................................................................................2511.002.00----------1.00----------------------------
...................................................................................................................................................................................AGCCCTCCCCTCGCACCCCAGC.................................................221.000.00----------------------------1.00----------
...............................................................................................................................................TGGGACGGGGGGCTCTGGGCCA.....................................................................................2211.001.00-----1.00---------------------------------
................................................................................................................................TCAGTCCACTACCGAACT........................................................................................................181.000.00-------------------------------1.00-------
.........................TAACTTGATTACATCTACGC.............................................................................................................................................................................................................201.000.00-----------------------1.00---------------
..........................................................................................................................................................................................................CTTCCAGCCACTGCGC................................1611.001.00-----------------------------------1.00---
..............................................................................................................................................ATGGGACGGGGGGCTCTGGGCCTAG...................................................................................2511.005.00-1.00-------------------------------------
.....................................................................................................................................................................................CCCTCCCCTCGCACCC.....................................................1680.120.12--------0.12------------------------------

Antisense strand
ACCCTAATCTAGTGTGACCTCATGTTAACTTGATTACATCTGCAAAGATCCTAGTTCCAAATAAGGCCACATGCACAGGTAGGGGCTGGGGAGAAGAGGACCTGAATGTCTCTGTTTGGGGACACCATTCAGTCCACTACCGATGGGACGGGGGGCTCTGGGCCAGCAGGACCTTGACTAGCCCTCCCCTCGCACCCCAGGACTTCCAGCCACTGCGCTATTTGGATGGTGTCCCCAGCTCCTTCCAGTT
.......................................................................(((...(((((((((((((....((.....))...(((((((....)))))))...)))))))).)))))..(((..((((....))))..))))))..................................................................................
.....................................................................70...................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040019(GSM532904)
G701T. (cervix)
.............................................................................................................................CATCGGTAGTGGACTGAATG......................................................................................................... 2011.001.00----------------------1.00----------------
..................................................................................................................................................................................................CCCCAGGACTTCCAGAGTG..................................... 191.000.00------------1.00--------------------------
.........................................................................................................................................................................................CCCCTCGCACCCCAGTCCA.............................................. 191.000.00----------------1.00----------------------
................................................................................................GAGGGGAGGGCTAGTCAAGGTCCTGCTGGCCCAGAGCCCCCCGTCCCATCGGTAGTGGACTGAATGGTGTCCCCAAACAGAGACATTCAGGTCCT........................................................... 9511.001.00------------------1.00--------------------
................................................................................................................................................................................................................CCATCCAAATAGCGCAGTGGC..................... 2111.001.00--------------------------1.00------------
.............................................AGATCCTAGTTCCAAGAGG.......................................................................................................................................................................................... 191.000.00-------------1.00-------------------------
......................................................................................................................................................................................................................................CTGGAAGGAGCTGGGGAC.. 1830.330.33--------------------------------------0.33