ID: uc002ant.2_intron_10_0_chr15_65114810_r.5p
GENE: PIF1(2)
chr15:65115777-65116026-


(5)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(19)
CELL-LINE 		(9)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(1)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN

Sense strand
CGCTGGTGAAGCGGCCTGTGGAGCCCCAGGCTGGGGCCGAGCCTAGCACAGTGAGGACGGGAAAGAAGGGACACCTTTAGGAGTAGATGTGCCATTCTTTAAGATGGCAGAGACCTAGAGACCCAAGTTTGAGGGGAAGCCGGTGTGGGTATTTGATACCCATCTGACATCTCAGTATGACAGGGGTGTGGGAATTGTGCCTGTGGTTGTTATAGTGTAATCCCTGAGATGGAGTAAATCAAAACAGGAA
............................................................................................(((.((...(((((.((((.(((......(((........)))......)))..((((((...)))))).)))).))))).)).))).......................................................................
............................................................................................93.....................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040039(GSM532924)
G531T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR040040(GSM532925)
G612N. (cervix)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
.................................................................................................TTTAAGATGGCAGAGCCC.......................................................................................................................................1877.000.0022.007.006.005.007.003.004.00--1.00--2.002.00-2.00-2.001.001.00----1.001.00-2.00---1.001.00---------------------1.001.00-------1.001.001.001.00---
.................................................................................................TTTAAGATGGCAGAGCCCG......................................................................................................................................1952.000.0010.002.003.003.001.004.002.00-4.002.002.003.00----1.00-1.00-2.00---1.001.00---2.00----1.001.00--1.00-1.00-------1.00-1.00-1.00--------1.00--------
....................................................................................................AAGATGGCAGAGACCGGTA...................................................................................................................................1911.000.004.001.00-----3.00---------------1.00----1.00--------------1.00--------------------------
....................................................................................................AAGATGGCAGAGACCGGT....................................................................................................................................187.000.00-------1.00---------------1.00----1.00----1.00-------------1.00---------1.00---------1.00--
...................................................................................................TAAGATGGCAGAGACCGGTA...................................................................................................................................206.000.004.00--------1.00----------------------------------------------------1.00-------
..................................................................................................TTAAGATGGCAGAGACCGGT....................................................................................................................................203.000.00--------------------------2.00--------------------------------1.00----------
................................................CAGTGAGGACGGGAACC.........................................................................................................................................................................................172.000.00----------------------2.00-----------------------------------------------
...................................................................................................TAAGATGGCAGAGACCGGCA...................................................................................................................................202.000.00----------------1.00--------------------------------1.00--------------------
.................................................................................................TTTAAGATGGCAGAGCTCG......................................................................................................................................192.000.00----------1.00----------1.00------------------------------------------------
.................................................................................................TTTAAGATGGCAGAGACCGGT....................................................................................................................................2121.500.50------------0.500.50----------------0.50---------------------------------------
.............................................................................................................................................................ACCCATCTGACATCTCAGT..........................................................................1911.001.00--------------------------------------------1.00-------------------------
....................................................................................................AAGATGGCAGAGACCGGGA...................................................................................................................................191.000.00----------------------------------------------1.00-----------------------
..................................................GTGAGGACGGGAAAGAAGGGACAC................................................................................................................................................................................2411.001.00-------1.00--------------------------------------------------------------
......TGAAGCGGCCTGTGGA....................................................................................................................................................................................................................................1611.001.00----------------------------------------------------------1.00-----------
.......GAAGCGGCCTGTGGAGCCCC...............................................................................................................................................................................................................................2011.001.00-------------------------------------1.00--------------------------------
.....................................................AGGACGGGAAAGAAGGGA...................................................................................................................................................................................1811.001.00------------------------------------1.00---------------------------------
....................................................................................................AAGATGGCAGAGACCGCTA...................................................................................................................................191.000.00---------------------------------------------------1.00------------------
.................................................................................................TTTAAGATGGCAGAGCG........................................................................................................................................171.000.00---1.00------------------------------------------------------------------
..........GCGGCCTGTGGAGCCGTT..............................................................................................................................................................................................................................181.000.00-----------------------------------------------------1.00----------------
........AAGCGGCCTGTGGAGCCCCAGGCTGGGGCCGAG.................................................................................................................................................................................................................3311.001.00------------------------------------------------------------1.00---------
...................................................................................................TAAGATGGCAGAGACCGGT....................................................................................................................................191.000.00-----------------------------------------1.00----------------------------
..................................................................................................TTAAGATGGCAGAGACCGGTA...................................................................................................................................211.000.00------------------------------------------1.00---------------------------
....................................................................................................AAGATGGCAGAGACCTGTA...................................................................................................................................191.000.00------------------------------1.00---------------------------------------
.................................................................................................TTTAAGATGGCAGAGACC.......................................................................................................................................1820.500.50--------------------------------------------------------------------0.50-
....................................................GAGGACGGGAAAGAAGGG....................................................................................................................................................................................1820.500.50---------------------------------------------------------------------0.50

Antisense strand
CGCTGGTGAAGCGGCCTGTGGAGCCCCAGGCTGGGGCCGAGCCTAGCACAGTGAGGACGGGAAAGAAGGGACACCTTTAGGAGTAGATGTGCCATTCTTTAAGATGGCAGAGACCTAGAGACCCAAGTTTGAGGGGAAGCCGGTGTGGGTATTTGATACCCATCTGACATCTCAGTATGACAGGGGTGTGGGAATTGTGCCTGTGGTTGTTATAGTGTAATCCCTGAGATGGAGTAAATCAAAACAGGAA
............................................................................................(((.((...(((((.((((.(((......(((........)))......)))..((((((...)))))).)))).))))).)).))).......................................................................
............................................................................................93.....................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040039(GSM532924)
G531T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR040040(GSM532925)
G612N. (cervix)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...............................................................................................................................................................................................................................CTGAGATGGAGTAAACCTG........ 191.000.00--------------1.00-------------------------------------------------------
.....................................................................................................................................................ATGTCAGATGGGTATCAAATA................................................................................ 2111.001.00---------------------1.00------------------------------------------------
...........CGGCCTGTGGAGCCCGAC............................................................................................................................................................................................................................. 181.000.00---------------------------------------------1.00------------------------
........................................................ACGGGAAAGAAGGGACAAT............................................................................................................................................................................... 191.000.00-------------------1.00--------------------------------------------------
.................................................................................................................................................................................CAGGCACAATTCCCACACCCCTGTCA............................................... 2611.001.00--------------------------------------------------------1.00-------------
...............................................................................................................................TTTGAGGGGAAGCCGGTTG........................................................................................................ 191.000.00--------------1.00-------------------------------------------------------
...........................................................................................................CAGAGACCTAGAGACATA............................................................................................................................. 181.000.00---------------------------------------1.00------------------------------