ID: uc002ang.1_intron_0_0_chr15_64458280_r.3p
GENE: CSNK1G1(10)
chr15:64458230-64458479-


(1)
BRAIN 		(1)
BREAST 		(13)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
XRN.ip

Sense strand
TATTACATGCTCTAATTTATTATATTATTATTTATCTGTCTTTGATCTTTGCCCATTGTACTCTTAAAAAGATGTTGGGATGTTGATTGCGATTTTTAAACAACTAGATAATGTATAAATCAGCAGTGGAAATCAGTTTTAATGTGTGGATGTGTCTGATTATTGTTAAATGCCTCTTTTTTTACTTTTTTTTTTTTTAGATGTATAATGTTTCATAAACCCTGGCACTGGTCACAAAGCTCAGCTGTGA
................................................................((((((((......(((.((.((((((((((....(((.........)))..))))).))))).)).))).........(((.(((.((((.((((....)))).)))).))).....)))......))))))))...................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR343336GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR038863(GSM458546)
MM603. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAG....................................................26203.000.0087.0037.0041.0031.002.003.001.00------------------1.00-------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTAG...................................................271197.003.0091.0028.0053.0022.001.002.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTAG..................................................281131.00131.0057.0025.0031.0014.001.003.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTAG.....................................................251129.001.0056.0025.0033.0012.002.00-1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTAG......................................................24101.000.0037.0034.008.0020.00-1.001.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTAG.......................................................2343.000.0013.0015.006.007.002.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTAG.................................................29138.003.0015.0010.009.004.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTAT..................................................2815.000.009.001.004.001.00-----------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTAATG.................................................2513.000.007.003.003.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAT....................................................2613.000.007.001.004.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTAT...................................................27112.003.005.001.004.002.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTAG........................................................2211.000.004.003.00-4.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTCAG..................................................28111.003.00-7.00-1.00-2.001.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTCTAG..................................................2811.000.00-6.00-2.001.001.001.00--------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTCCCG................................................2410.000.002.00-7.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTCAG...................................................2710.000.00-5.00-3.00-2.00---------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTAATG...................................................2310.000.004.001.00-4.00-1.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTTAG................................................30110.003.005.00-4.001.00-----------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTAATG................................................2610.000.004.002.003.001.00-----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTAG....................................................238.000.002.005.00-1.00-----------------------------
.........CTCTAATTTATTATATTATTATTTATCTG....................................................................................................................................................................................................................2918.008.003.00-5.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTAAG..................................................2818.003.00-3.004.00--1.00---------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTTTAG...................................................307.000.00----6.00-1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTAT......................................................247.000.001.001.001.004.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTAT.....................................................2516.001.001.002.002.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTCTAG...................................................2716.001.00-2.00-2.001.001.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTG....................................................2616.003.002.002.001.001.00-----------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTAATG..................................................246.000.003.001.001.001.00-----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATAAG...............................................245.000.002.001.002.00------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTTTAATG................................................255.000.002.003.00-------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTCTAG....................................................264.000.00-3.00-1.00-----------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTTTTAG.....................................................244.000.003.00---1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTCAG....................................................2614.001.00-1.001.001.00-1.00---------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTCTAG...................................................304.000.00----3.00-1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTAAG.................................................294.000.002.00-1.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAA....................................................264.000.003.00-1.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTT...................................................2714.003.001.00-2.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTA..................................................2814.003.001.002.001.00------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTGTTC...................................................224.000.00-------3.00---------------------1.00---
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAAG...................................................274.000.002.001.001.00------------------------------
.....................................................................................................................................................................................TTACTTTTTTTTTTTTTATTTG...............................................223.000.001.00-1.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTCAG................................................3013.003.00-2.00-1.00-----------------------------
.....................................................................AGATGTTGGGATGTTGATTGCGATT............................................................................................................................................................2513.003.00--------3.00------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTT.....................................................2513.003.001.00-2.00------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTCAG..................................................243.000.00--1.00---2.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTAAG....................................................2613.001.002.00-1.00------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATAAT...............................................243.000.00--2.001.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTAT.................................................2913.003.001.00-2.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTT....................................................2613.003.00--2.001.00-----------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTTTTTAG....................................................253.000.002.00---1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTCAG........................................................223.000.00-2.00-1.00-----------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTAG.....................................................283.000.00----2.00-1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTCAG.......................................................233.000.00-2.00-1.00-----------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTTAG...................................................293.000.00----3.00----------------------------
....................................................................................................................................................................................TTTACTTTTTTTTTTTTTATAAT...............................................232.000.001.00-1.00------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTAG......................................................272.000.00----1.00-1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTAA..................................................282.000.002.00--------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTCAG.................................................2912.003.00---2.00-----------------------------
..........TCTAATTTATTATATTATTATTTATCTG....................................................................................................................................................................................................................2812.002.001.00--1.00-----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTTAGATG...............................................2812.002.00----2.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTAG.........................................................212.000.001.00-1.00------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTAATG..................................................232.000.001.001.00-------------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTTAG..................................................2522.002.000.500.500.500.50-----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTAG......................................................212.000.00-1.00-1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTAAG.....................................................252.000.001.001.00-------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTAG......................................................2612.001.00----2.00----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTAGAAG...............................................242.000.00-1.00-1.00-----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTCAG...................................................242.000.00-2.00-------------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTTTAG......................................................232.000.00-1.001.00------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTCAG........................................................252.000.00----2.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTCCAG..................................................282.000.00---1.00-1.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTGG...................................................2712.003.00-2.00-------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTCTAG.................................................2912.003.00-1.001.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTCTAG.....................................................252.000.00-1.00-1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTAAT....................................................2612.001.001.001.00-------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTCTTT....................................................292.000.00----2.00----------------------------
.............................................................................................................................................................................................................TAATGTTTCATAAACCCTGGCACTGGTCAC...............3012.002.00------2.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTGG..................................................2812.003.00--1.001.00-----------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTAAG...................................................222.000.00-----2.00---------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTAG........................................................212.000.00-2.00-------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTG...................................................2712.003.001.00-1.00------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTTCAG...................................................302.000.00----2.00----------------------------
...................................CTGTCTTTGATCTTTGCCCATT.................................................................................................................................................................................................2212.002.00---------2.00-----------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTTTTTTTAG..................................................2712.002.00--1.001.00-----------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTATTG..................................................222.000.001.00----1.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTCAG.....................................................252.000.00-1.00--1.00----------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTTAG....................................................292.000.00----2.00----------------------------
................................................................TAAAAAGATGTTGGGATGTT......................................................................................................................................................................2012.002.00--------------2.00------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTTAGATT...............................................281.000.00-1.00-------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTTTAAATG...............................................261.000.00-1.00-------------------------------
........................................TTTGATCTTTGCCCATTG................................................................................................................................................................................................1811.001.00------------------1.00--------------
..........................................................................TTGGGATGTTGATTGTTC..............................................................................................................................................................181.000.00-------------------1.00-------------
..............................................................................................................................................................................TCTTTTTTTACTTTTTTTTTTAT.....................................................231.000.00--1.00------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTATTG.................................................251.000.001.00--------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTT........................................................2411.001.00------1.00--------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTCAAG................................................231.000.00-1.00-------------------------------
..............................................................................................................ATGTATAAATCAGCAGTGG.........................................................................................................................1911.001.00---------------------1.00-----------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTCC..................................................241.000.00----1.00----------------------------
...........................................................................................................................................................................................TTTTTTTTTTTAGATGTATACTT........................................231.000.00-----------------1.00---------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTG.....................................................251.000.00--1.00------------------------------
.......................................................................................................................................................................AAATGCCTCTTTTTTTACTTTTTTTTTTTCAG...................................................321.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTTAT................................................3011.003.001.00--------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTATAG...................................................2711.001.00---1.00-----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTCTAG................................................231.000.00---1.00-----------------------------
....................................................................................................................................................................................TTTACTTTTTTTTTTTTTATAAG...............................................231.000.001.00--------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTCAG...................................................291.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTG.......................................................231.000.001.00--------------------------------
......................................................................................................................................AGTTTTAATGTGTGGATGTGTCTGACT.........................................................................................271.000.00----1.00----------------------------
...........................................................................................ATTTTTAAACAACTAGATAATGTATAAATCA................................................................................................................................3111.001.00-------1.00-------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTTTAGAT................................................3211.001.00------1.00--------------------------
........................................................................................................................................................................AATGCCTCTTTTTTTACTTTTTTT..........................................................2411.001.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTAC...................................................2711.003.00---1.00-----------------------------
.......................................................................................................................................................................................ACTTTTTTTTTTTTTAGGGG...............................................201.000.00----1.00----------------------------
..............................................................................................................................................................................TCTTTTTTTACTTTTTTTTTTTTTATTC................................................281.000.00-----1.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTCAAG...................................................2711.001.00-1.00-------------------------------
...........................................................................TGGGATGTTGATTGCGATTTTCAA.......................................................................................................................................................241.000.00------1.00--------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATGAT...............................................241.000.001.00--------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTAAATG...............................................271.000.001.00--------------------------------
.....................................................................................................................................................................................TTACTTTTTTTTTTTTTATAAT...............................................221.000.00---1.00-----------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTAGGG................................................261.000.001.00--------------------------------
......................................................................GATGTTGGGATGTTGATTGCGAT.............................................................................................................................................................2311.001.00---------1.00-----------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTAAAAG...............................................251.000.00-----1.00---------------------------
.................................................................AAAAAGATGTTGGGATGTT......................................................................................................................................................................1911.001.00----------------------1.00----------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTAGAAAAG.............................................261.000.00-----1.00---------------------------
...................TTATATTATTATTTATCTG....................................................................................................................................................................................................................1911.001.00------------1.00--------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTATG..................................................2811.003.00-----1.00---------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTACAT................................................231.000.00-1.00-------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTTA....................................................281.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTCTAG........................................................221.000.00---1.00-----------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTAG.......................................................2611.001.00----1.00----------------------------
.............................................................................................................................................ATGTGTGGATGTGTCTGATTACTG.....................................................................................241.000.00----1.00----------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTCCGG................................................241.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAAA...................................................271.000.001.00--------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTCTAG.......................................................231.000.00-1.00-------------------------------
.................................................................................................................................................GTGGATGTGTCTGATTA........................................................................................1711.001.00---------------------------1.00-----
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTAGTG...................................................231.000.00-1.00-------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTAAT..................................................2811.003.001.00--------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTCTT........................................................221.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTAGA.................................................2911.001.00----1.00----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATTAG...............................................241.000.001.00--------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTAATA..................................................231.000.00-----------1.00---------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTGCTC...................................................221.000.00-------1.00-------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATTG................................................231.000.001.00--------------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTAT......................................................211.000.00---1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTAA......................................................241.000.00--1.00------------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTCTCG........................................................211.000.00-1.00-------------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTAAG...........................................................181.000.00-1.00-------------------------------
........................................................................................................................................................................AATGCCTCTTTTTTTACTTTTTTTTTCTC.....................................................291.000.00----1.00----------------------------
......................................................................................................................................................................................................................ATAAACCCTGGCACTGGTCACAAAG...........2511.001.00----------------1.00----------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTAATG.................................................261.000.00-1.00-------------------------------
....................................................................................................................................................................................................................TCATAAACCCTGGCACTGGTCACAAAG...........2711.001.00-------1.00-------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTCTAG................................................241.000.00---1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTTA.................................................2911.003.00--1.00------------------------------
............................................ATCTTTGCCCATTGTACTCTTAAAAAG...................................................................................................................................................................................2711.001.00----------------------------1.00----
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTCTT......................................................241.000.00------1.00--------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTA......................................................2411.001.00---1.00-----------------------------
..............................................................................................................................................................................................................................TGGCACTGGTCACAAAGCTC........2011.001.00-----------1.00---------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTCCC.....................................................221.000.00----1.00----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATATG...............................................241.000.001.00--------------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00--------------------1.00------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTCCGG................................................231.000.00----1.00----------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTAG.........................................................231.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTTTG..................................................2811.003.00--1.00------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTACCG................................................231.000.00--1.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTTA....................................................2611.003.00--1.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTCTTT.....................................................251.000.00------1.00--------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTTTAG..................................................3011.001.00----1.00----------------------------
....................................................................AAGATGTTGGGATGTTGATTGCG...............................................................................................................................................................2311.001.00--------1.00------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTT.......................................................2311.001.00-----1.00---------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTCCC.................................................231.000.00--1.00------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTT.........................................................2411.001.00----1.00----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATTTG...............................................241.000.00--1.00------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTCACG................................................231.000.00-1.00-------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTATAG.......................................................231.000.00-----1.00---------------------------
........................................................................................................................................................................AATGCCTCTTTTTTTACTTTTTTTTTTAG.....................................................291.000.00----1.00----------------------------
.......................................................................................................................TCAGCAGTGGAAATCAGT.................................................................................................................1811.001.00-----------------------1.00---------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTCAG......................................................241.000.00-1.00-------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTT.......................................................2511.001.00----1.00----------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTATAG................................................231.000.00---1.00-----------------------------
..............................................................................................................................................................................TCTTTTTTTACTTTTTTTTTTAG.....................................................231.000.00----1.00----------------------------
..............................................................................................................................................................................TCTTTTTTTACTTTTTTTTCC.......................................................211.000.00-----1.00---------------------------
.....................................................................................................................................................................................TTACTTTTTTTTTTTTTATAAG...............................................221.000.00-1.00-------------------------------
.............................................................................................................................................................................CTCTTTTTTTACTTTTTTTTTTTTTATTCT...............................................301.000.00--1.00------------------------------
.....................................................................AGATGTTGGGATGTTGATTGCGTT.............................................................................................................................................................241.000.00------------------------1.00--------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTATTG.....................................................221.000.00---1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTGG....................................................261.000.001.00--------------------------------
.....................................................................................................................................................................................TTACTTTTTTTTTTTTTACG.................................................201.000.001.00--------------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTTTAGAA................................................251.000.00------------1.00--------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTTTTAC..................................................301.000.00----1.00----------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTAACA................................................241.000.00---1.00-----------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTTTCGGC................................................251.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTAAT.....................................................251.000.001.00--------------------------------
.....................ATATTATTATTTATCTTCA..................................................................................................................................................................................................................191.000.00-----1.00---------------------------
...............................................................................................................TGTATAAATCAGCAGTGGAAATCAGTTTT..............................................................................................................2911.001.00------1.00--------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTTTTCAG..................................................231.000.00----1.00----------------------------
........................................................................TGTTGGGATGTTGATTGCG...............................................................................................................................................................1911.001.00-------------------------------1.00-
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTA.......................................................231.000.00-1.00-------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTACTG................................................231.000.001.00--------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTACAAG...............................................241.000.00---1.00-----------------------------
............................................................................................................................................AATGTGTGGATGTGTCTGATTA........................................................................................2211.001.00--------------------------1.00------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTA.....................................................251.000.00-1.00-------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTCGTC................................................231.000.00----1.00----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTAT...................................................241.000.001.00--------------------------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTCT.....................................................2711.001.00----1.00----------------------------
.................................................................................................................................................................................TTTTTTACTTTTTTTTTGTTC....................................................211.000.00-------1.00-------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTAG.....................................................221.000.00-1.00-------------------------------
.........................................................................................................................................................................ATGCCTCTTTTTTTACTTTTTTTTTTTTC....................................................291.000.00----1.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTAAT...................................................271.000.001.00--------------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTATG.................................................231.000.001.00--------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTAATA................................................261.000.00-1.00-------------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTTTCTG.................................................261.000.00--1.00------------------------------
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTAATG................................................241.000.00---1.00-----------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTATTG...................................................231.000.00--1.00------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTAAAA.................................................251.000.00--1.00------------------------------
...................................................................................................................................................................................TTTTACTTTTTTTTTTTTTAGAAAAA.............................................261.000.00---1.00-----------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTTATT...................................................271.000.001.00--------------------------------
................................................................................................................................................................................TTTTTTTACTTTTTTTTTTTTTATG.................................................251.000.00----1.00----------------------------
............................................................................................................................................................................................................ATAATGTTTCATAAACCCTGGCACTGG...................2711.001.00------1.00--------------------------
.............................................................................................................................................................................................................................CTGGCACTGGTCACAAAGCT.........2011.001.00---------------1.00-----------------
..........................................................................................................................................................................TGCCTCTTTTTTTACTTTTTTTTTTAG.....................................................2711.001.00----1.00----------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTTTCTAG..................................................251.000.00---1.00-----------------------------
......................................................................................TTGCGATTTTTAAACAACTAGACAA...........................................................................................................................................251.000.00------1.00--------------------------
...............................................................................................................................................................................CTTTTTTTACTTTTTTTTTCTA.....................................................221.000.00-1.00-------------------------------
.............................................................................................................................................ATGTGTGGATGTGTCTGATTATTG.....................................................................................2411.001.00----1.00----------------------------
.....................................................................................................................................................................................TTACTTTTTTTTTTTTTACTCT...............................................221.000.00--1.00------------------------------
............................................................................................................................................................................CCTCTTTTTTTACTTTTTTTTTTGG.....................................................2511.001.001.00--------------------------------
..TTACATGCTCTAATTTA.......................................................................................................................................................................................................................................1720.500.50-----0.50---------------------------
..................................................................................................................................................................................................................TTTCATAAACCCTGGCA.......................1720.500.50--------------------------------0.50
..................................................................................................................................................................................TTTTTACTTTTTTTTTTTTTAG..................................................2290.220.220.11-0.11------------------------------
..............................................................................................................................................................ATTATTGTTAAATGCC............................................................................1660.170.17-----0.17---------------------------
.............................................................................................................AATGTATAAATCAGC..............................................................................................................................1570.140.14-----------0.14---------------------

Antisense strand
TATTACATGCTCTAATTTATTATATTATTATTTATCTGTCTTTGATCTTTGCCCATTGTACTCTTAAAAAGATGTTGGGATGTTGATTGCGATTTTTAAACAACTAGATAATGTATAAATCAGCAGTGGAAATCAGTTTTAATGTGTGGATGTGTCTGATTATTGTTAAATGCCTCTTTTTTTACTTTTTTTTTTTTTAGATGTATAATGTTTCATAAACCCTGGCACTGGTCACAAAGCTCAGCTGTGA
................................................................((((((((......(((.((.((((((((((....(((.........)))..))))).))))).)).))).........(((.(((.((((.((((....)))).)))).))).....)))......))))))))...................................................
................................................................65.....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR343336GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343334SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR189786SRR038863(GSM458546)
MM603. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
.........................................................................GTTGGGATGTTGATTG................................................................................................................................................................. 165.000.00----------3.00--2.00-------------------
.................................ATCTGTCTTTGATCTCATA...................................................................................................................................................................................................... 191.000.00------------------------------1.00--
...............................................................................................................................................ACAATAATCAGACACATCCACAC.................................................................................... 2311.001.00---------------1.00-----------------