ID: uc001zkl.2_intron_1_0_chr15_40231819_f.3p
GENE: (2)
chr15:40235384-40235633+


(1)
B-CELL 		(5)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(3)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GAAGGCTTTGGCCAGCCCACTTCTTCCCTGTAGGACGCAGGTGACTCCACTGTCAACTGGAGTTGCAGGGATATGGTTGAAGTCCCTTTGAGATTAAGGGCCTTGGGCCCAGAGTGCTTTCAGTTTAGCAAATATTAATGCAAACAGGCTATACTTTCTGGAGTAACTCTTTTTTTTTTTTTTTTTTTTGCCTTTTCCAGAGTTCCTGAAATAGAGTTAAAAAATGCCAAAGGTCTATCAAATGAAAGTG
...............................................................................................................................(((((.......((......))..(((((....))))).....................)))))...........................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTAAAG..........................................................2811.000.00-5.004.00-2.00-----------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGTT.........................................................288.000.007.00--1.00------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTACAG..........................................................276.000.005.00--1.00------------------------------
....................................................................................................................................TATTAATGCAAACAGTACA...................................................................................................195.000.00--------------1.00-------1.00---1.00-1.001.00----
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTAAAT..........................................................284.000.00-3.00--1.00-----------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGGCG......................................................264.000.003.00--1.00------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTGCCGGCG......................................................233.000.003.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCTGGCG.....................................................303.000.003.00---------------------------------
....................................................................................................................................TATTAATGCAAACAGTAGA...................................................................................................193.000.00------------1.00----1.001.00---------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCGGC.......................................................233.000.003.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTAAAA..........................................................273.000.00--2.00--1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTATTT...........................................................273.000.00-1.002.00-------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCCCGG......................................................293.000.002.001.00--------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTGCCGGC.......................................................223.000.003.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTAGT...........................................................272.000.002.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTACAG.............................................................252.000.00-1.001.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTATTT..........................................................282.000.00-1.00--1.00-----------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCGGCG......................................................242.000.002.00---------------------------------
...........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCCGGCG......................................................252.000.002.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGCG.........................................................282.000.002.00---------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGGC.......................................................252.000.002.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTAAG...................................................................202.000.00-1.00---1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTAATG............................................................262.000.00--2.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTATAG...........................................................272.000.00-1.001.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTAAAA..........................................................282.000.00-1.00---1.00----------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGGC.......................................................262.000.002.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTATAG...............................................................222.000.00-1.001.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTGGC..........................................................282.000.002.00---------------------------------
......................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTTTTGCAGT........................................................282.000.00---1.00--1.00---------------------------
...........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCCGGC.......................................................242.000.002.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTATTT.............................................................252.000.00-2.00--------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTAACC..........................................................272.000.002.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTATAG.............................................................252.000.00--2.00-------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCGTTG......................................................292.000.002.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTCCCC............................................................271.000.001.00---------------------------------
...........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCCGGCT......................................................251.000.001.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGTC.........................................................281.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTATG...........................................................271.000.00--1.00-------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCCCC.......................................................281.000.001.00---------------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCGGCT......................................................241.000.00---1.00------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGCTG......................................................271.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTACTG.............................................................261.000.00-----1.00----------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGAGG........................................................291.000.00---1.00------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTCCG..........................................................291.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTAAAA...............................................................231.000.00-----1.00----------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGTTC.......................................................281.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTACTG.........................................................301.000.00----1.00-----------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTCTG..........................................................291.000.00--1.00-------------------------------
....................................................................................................................................TATTAATGCAAACAGTTCC...................................................................................................191.000.00-------------1.00--------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGGCG......................................................271.000.00---1.00------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTGCCGGCT......................................................231.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTCAAG..........................................................281.000.00------1.00---------------------------
...........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCCTTTGTC....................................................271.000.00------1.00---------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTCTT...........................................................281.000.00----1.00-----------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCTCGC......................................................271.000.001.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCAGC........................................................291.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTAAGG............................................................261.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGCC........................................................271.000.00---1.00------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCTTTCCCC...................................................291.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTCTG...........................................................281.000.00--1.00-------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTACCG..........................................................271.000.00-1.00--------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCTCTTG.....................................................301.000.00-1.00--------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCGGCC.......................................................271.000.001.00---------------------------------
..................................................................................................................................................................................TTTTTTTTTTTGCCTTTTCCCTA.................................................231.000.001.00---------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCTGGGG.....................................................291.000.001.00---------------------------------
.................................................................................................................................................................AGTAACTCTTTTTTTTTTTTTTTTTTTTACT..........................................................311.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTCCG................................................................231.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTAGG..............................................................241.000.001.00---------------------------------
...................................................................................................................................ATATTAATGCAAACAGTC.....................................................................................................181.000.00---------1.00------------------------
...........................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCCGCG.......................................................241.000.001.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGCC.........................................................281.000.001.00---------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCTTTCAAG...................................................291.000.00---1.00------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCGG........................................................271.000.001.00---------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCAGTG......................................................281.000.00------1.00---------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTCTT..........................................................291.000.00----1.00-----------------------------
..................................................................................................................................AATATTAATGCAAACAGTATA...................................................................................................211.000.00-------1.00--------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCGG.........................................................281.000.001.00---------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGGCT......................................................271.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGAGG.......................................................281.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTATTG.............................................................251.000.00-1.00--------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTAATT.........................................................301.000.00----1.00-----------------------------
......................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTTTTGCGTAA.......................................................291.000.00-----1.00----------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCTGG........................................................291.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTGCCTTTC......................................................321.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTACCT..........................................................281.000.00-----1.00----------------------------
...................................................................................................................................ATATTAATGCAAACAGTACC...................................................................................................201.000.00----------1.00-----------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTATCG...............................................................231.000.00--1.00-------------------------------
.................................................................................................................................................................AGTAACTCTTTTTTTTTTTTTTTTTTTGGTG..........................................................311.000.00---1.00------------------------------
....................................................................................................................................TATTAATGCAAACAGTATC...................................................................................................191.000.00------------------------------1.00---
......................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTTTTGCCCG........................................................281.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTATT...........................................................281.000.00-----1.00----------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCCTTGAG.....................................................321.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTAAT...........................................................281.000.00----1.00-----------------------------
....................................................................................................................................TATTAATGCAAACAGGA.....................................................................................................171.000.00---------------1.00------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCGGGC.......................................................271.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCCCCT......................................................291.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTCGG..........................................................281.000.001.00---------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGAGG......................................................271.000.00---1.00------------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCTCCGG.....................................................281.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTATTG...........................................................271.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTCTGC.........................................................291.000.001.00---------------------------------
....................................................................................................................................TATTAATGCAAACAGGACCT..................................................................................................201.000.00---------------------------1.00------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCTTTTTTCT..................................................281.000.00---1.00------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTGCCGCAC......................................................231.000.00---1.00------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCTATG......................................................281.000.00------1.00---------------------------
.....................................................................................................................................................................................................................GAGTTAAAAAATGCCAAAGGTCTATCAAATG......3111.001.00---------------------1.00------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTATT..............................................................241.000.00--1.00-------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCATGG.......................................................281.000.00------1.00---------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGGT.........................................................281.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTATT.............................................................261.000.00-1.00--------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTATTT.............................................................261.000.00--1.00-------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCGCAG......................................................281.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTATAT..........................................................281.000.00-1.00--------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGGGC.......................................................281.000.00---1.00------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGCGC......................................................261.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCGGA.......................................................281.000.00---1.00------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGGTGA........................................................291.000.00---1.00------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTATT............................................................261.000.00--1.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTAATG...............................................................231.000.00-----1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTCGAG.........................................................291.000.00---1.00------------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCTTTAGTG...................................................271.000.00------------------------1.00---------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTGCCGGCC......................................................231.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCACTT.......................................................281.000.00---1.00------------------------------
......................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTTTTGCGG.........................................................271.000.001.00---------------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGCGG......................................................261.000.00---1.00------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTCCG...........................................................271.000.00-----1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTATCT............................................................261.000.00-----1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTGGCG.........................................................291.000.001.00---------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGGTT.......................................................281.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTATG.............................................................251.000.00-1.00--------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTACTG..........................................................271.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTCCG...........................................................281.000.00-----1.00----------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGAGG......................................................261.000.00-----1.00----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTAGGG...........................................................271.000.001.00---------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCG..........................................................271.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTCACG............................................................271.000.00-----1.00----------------------------
.........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCCGGCC......................................................271.000.001.00---------------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCGCG.......................................................231.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTCC............................................................271.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTATG................................................................221.000.00--1.00-------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTATGG...............................................................221.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTCCAC..........................................................281.000.00-----1.00----------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCCCCC......................................................291.000.00---1.00------------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCCCG........................................................271.000.00------1.00---------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTATAG...............................................................231.000.00----1.00-----------------------------
.......................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTGCGGT........................................................271.000.00-----1.00----------------------------
............................................................................................................................................................................TTTTTTTTTTTTTTTTTGCCGGCC......................................................241.000.001.00---------------------------------
.........................................................................................................................................................................................................................TAAAAAATGCCAAAGGTCTATCAAAT.......2611.001.00--------1.00-------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTGTCCA........................................................311.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTAAGG..........................................................281.000.00------1.00---------------------------
..................................................................................................................................AATATTAATGCAAACAGTATT...................................................................................................211.000.00-------1.00--------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTATAG..........................................................281.000.00--1.00-------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTATAT................................................................221.000.00--1.00-------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTCCG...............................................................241.000.00-----1.00----------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTACTG..........................................................291.000.00----1.00-----------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCTATC.......................................................301.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTACTT...........................................................281.000.00------1.00---------------------------
..........................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGCCGCG.......................................................251.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTAAT..........................................................291.000.00-1.00--------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTAGTG..........................................................291.000.00------1.00---------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTAG..............................................................251.000.00----1.00-----------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTAAC................................................................231.000.00----1.00-----------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTAAGG.............................................................251.000.00-1.00--------------------------------
......................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTTTTGCAGC........................................................281.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTCC...........................................................281.000.001.00---------------------------------
...................................................................................................................................................................TAACTCTTTTTTTTTTTTTTTTTTTTAT...........................................................281.000.00------1.00---------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTCAAG.........................................................291.000.00---1.00------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCTGGCG.....................................................291.000.001.00---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTAATT.............................................................251.000.00-1.00--------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTGC...........................................................2730.670.670.33--0.33------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCC..........................................................2770.430.430.43---------------------------------
....................................................................................................................................................................AACTCTTTTTTTTTTTTTTTTTTTTGCG..........................................................2830.330.670.33---------------------------------
........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTGCCTTTTCC....................................................3030.330.33---0.33------------------------------
.....................................................................................................................................................................ACTCTTTTTTTTTTTTTTTTTTTTGCCAAG.......................................................3070.140.43------0.14---------------------------
..............................................................................................................................................................TGGAGTAACTCTTTT.............................................................................1590.110.11---------------------------------0.11

Antisense strand
GAAGGCTTTGGCCAGCCCACTTCTTCCCTGTAGGACGCAGGTGACTCCACTGTCAACTGGAGTTGCAGGGATATGGTTGAAGTCCCTTTGAGATTAAGGGCCTTGGGCCCAGAGTGCTTTCAGTTTAGCAAATATTAATGCAAACAGGCTATACTTTCTGGAGTAACTCTTTTTTTTTTTTTTTTTTTTGCCTTTTCCAGAGTTCCTGAAATAGAGTTAAAAAATGCCAAAGGTCTATCAAATGAAAGTG
...............................................................................................................................(((((.......((......))..(((((....))))).....................)))))...........................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784TAX577588(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
............CAGCCCACTTCTTCCCTGAAG......................................................................................................................................................................................................................... 211.000.00--------------------1.00-------------
...........................................................................................................................................................................................................................AAAAATGCCAAAGGTACAT............ 191.000.00------1.00---------------------------
.........GGCCAGCCCACTTCTTA................................................................................................................................................................................................................................ 171.000.00-------------------------1.00--------
..................................................................................................................................................................GTAACTCTTTTTTTTTTGAGG................................................................... 211.000.00-----------1.00----------------------
..................................................................................................................................................................................................................ATAGAGTTAAAAAATAAG...................... 181.000.00-----------------------1.00----------
...................................................................................................................................................................AAAAAAAAAAAGAGTTA...................................................................... 1701.001.00-------------------1.00--------------
...........CCAGCCCACTTCTTCCAG............................................................................................................................................................................................................................. 181.000.00----------------1.00-----------------
..............TACAGGGAAGAAGTGGGC.......................................................................................................................................................................................................................... 1820.500.50-------------------------------0.50--
..............................................................................................................................................................................................................TTTTTTAACTCTATTTCA.......................... 1840.250.25----0.25-----------------------------
..............CAGGGAAGAAGTGGGC............................................................................................................................................................................................................................ 1690.110.11--------------------------------0.11-