ID: uc001zji.2_intron_4_0_chr15_37173870_r.3p
GENE: LOC145845(2)
chr15:37173820-37174069-


(2)
BREAST
(5)
CELL-LINE
(4)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
CCTTAGGAAGAGACGGAAAACACCCCTTGCCATTAATCTTAAACCACTTGAAGATTATGAGTAAAAGAATGGGATCACTAAGCATTACCATCTCAAGTAGCTGTTAACTGCCCCCATCCCTTTATTGTGGCAACAAAATAAACTCTTCACTAAGAATGATGTTTCTTCCTTTTTTGTCTTTGTTTTTGTTTTGCTTTAAGGGCAAAGAAGGGAAAACAGAAGCAAAGAAAACTGTTTCAAAAGTCTTGGA
.....................................................................................................................................(((((((((......((.(((((.((.......)).))))).)).......))))))))).........................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTGG.......................................................255.000.001.004.00-------------
.................................................................................................................................................................TTTCTTCCTTTTTTGTCTATG....................................................................214.000.003.001.00-------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTCC.........................................................224.000.004.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTTCTC......................................................274.000.002.002.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTTCC......................................................264.000.004.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCT........................................................242.000.00-2.00-------------
.............................................................................................................................................................................TTGTCTTTGTTTTTGTTTTGGTAG.....................................................242.000.00-2.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCGG.......................................................252.000.001.001.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCTC.......................................................252.000.002.00--------------
....................................................................................................................................................................................................................................AAACTGTTTCAAAAGGGAT...192.000.00-----1.00-------1.00-
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTGGC......................................................262.000.00-2.00-------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTCGGC......................................................252.000.002.00--------------
.....................................................................................................................................................................TTCCTTTTTTGTCTTTGTCC.................................................................202.000.002.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTACC.......................................................252.000.002.00--------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTCTGC......................................................252.000.00-2.00-------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTGGT.......................................................242.000.002.00--------------
.............................................................................................................................................................................TTGTCTTTGTTTTTGTTTTGGTA......................................................232.000.00-2.00-------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTGC........................................................2312.002.002.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTCCC......................................................262.000.001.001.00-------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTGTGGC.....................................................2812.002.002.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTG.........................................................2412.002.00-2.00-------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTTTCC......................................................271.000.001.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTTTTA......................................................271.000.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTCTGT............................................................201.000.001.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTCT........................................................251.000.00-1.00-------------
......GAAGAGACGGAAAACCG...................................................................................................................................................................................................................................171.000.00------1.00--------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTGAG.......................................................2611.002.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTTC.......................................................251.000.001.00--------------
..............................................................................................................................................................................TGTCTTTGTTTTTGTTTCAGG.......................................................211.000.001.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTGC........................................................2411.001.00-1.00-------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTTAGG......................................................251.000.001.00--------------
............................................................................................................................................................................TTTGTCTTTGTTTTTGTTTTGTGG......................................................241.000.001.00--------------
.............................................................................................................................................................................TTGTCTTTGTTTTTGTTTTGGAAG.....................................................241.000.00-1.00-------------
.............................................................................................................................................................................TTGTCTTTGTTTTTGTTTTGAAGG.....................................................241.000.00-1.00-------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTC.........................................................241.000.00-1.00-------------
.............................................................................................................................................................................TTGTCTTTGTTTTTGTTTTACC.......................................................221.000.001.00--------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTGTAGA.....................................................261.000.001.00--------------
................................................................................................................................................................GTTTCTTCCTTTTTTGTC........................................................................1811.001.001.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGGGGT..........................................................231.000.00-1.00-------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTATTG......................................................271.000.001.00--------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTTGGT......................................................251.000.001.00--------------
............................................................................................................................................................................TTTGTCTTTGTTTTTGTTTTGCCCTT....................................................261.000.001.00--------------
..............................................................................................................................................................................TGTCTTTGTTTTTGTTTTGGTAG.....................................................231.000.00-1.00-------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTTGG.......................................................261.000.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCAAA......................................................261.000.00---1.00-----------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTGGTAG.....................................................261.000.001.00--------------
............................................................................................................................................................................TTTGTCTTTGTTTTTGTTTTGG........................................................221.000.00-1.00-------------
............................................................................................................................................................................TTTGTCTTTGTTTTTGTTTTTTCC......................................................241.000.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTCATC.......................................................251.000.001.00--------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTTTTA......................................................251.000.001.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTGCAC......................................................2611.001.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCAAC......................................................261.000.00---1.00-----------
............................................................................................................................................................................TTTGTCTTTGTTTTTGTTTTGGTAG.....................................................251.000.001.00--------------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTTACC......................................................251.000.001.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTCGCC.......................................................251.000.001.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTTAC......................................................261.000.001.00--------------
................................................................................................................................................................................TCTTTGTTTTTGTTTTGCTTTTTT..................................................241.000.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTTTTC......................................................261.000.001.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTGCGGC.....................................................281.000.001.00--------------
.........................................................................................................................................................................TTTTTTGTCTTTGTTTTTGTTTTCCTC......................................................271.000.001.00--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTCGGT......................................................261.000.001.00--------------
.......................................................................................................................................AAATAAACTCTTCACTATTAA..............................................................................................211.000.00-------1.00-------
...........................................................................................................................................................................TTTTGTCTTTGTTTTTGTTTTTGG.......................................................241.000.00-1.00-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTG.........................................................2370.290.29-0.29-------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTGTAGG.....................................................2770.140.290.14--------------
..........................................................................................................................................................................TTTTTGTCTTTGTTTTTGTTTTGTGG......................................................2670.140.29-0.14-------------

Antisense strand
CCTTAGGAAGAGACGGAAAACACCCCTTGCCATTAATCTTAAACCACTTGAAGATTATGAGTAAAAGAATGGGATCACTAAGCATTACCATCTCAAGTAGCTGTTAACTGCCCCCATCCCTTTATTGTGGCAACAAAATAAACTCTTCACTAAGAATGATGTTTCTTCCTTTTTTGTCTTTGTTTTTGTTTTGCTTTAAGGGCAAAGAAGGGAAAACAGAAGCAAAGAAAACTGTTTCAAAAGTCTTGGA
.....................................................................................................................................(((((((((......((.(((((.((.......)).))))).)).......))))))))).........................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR040031(GSM532916)
G013T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
....................................................................................................................................................................CTTCCTTTTTTGTCTTGAAT.................................................................. 202.000.00-----------1.00--1.00
.....................................................................................................................................................................................................................AAACAGAAGCAAAGAAAAGT................. 201.000.00-1.00-------------
....................................................................................................................................................................CTTCCTTTTTTGTCTGAGT................................................................... 191.000.00------------1.00--
.................................................................................................................................................................TTTCTTCCTTTTTTGTCTT...................................................................... 191.000.00--------1.00------
....................................................................................................................................................................CTTCCTTTTTTGTCTGACT................................................................... 191.000.00---------1.00-----
....................................................................................................................................................................CTTCCTTTTTTGTCTGCA.................................................................... 181.000.00----------1.00----
.................................................................................................................................................................TTTCTTCCTTTTTTGTCTTCG.................................................................... 211.000.00----1.00----------
....................................................................................................................................................................CTTCCTTTTTTGTCTGAC.................................................................... 181.000.00--1.00------------
..................................................................................................AGCTGTTAACTGCCCCTTAG.................................................................................................................................... 201.000.00-1.00-------------
.................................................................................................................................................................TTTCTTCCTTTTTTGTCTTA..................................................................... 201.000.00--1.00------------