| (10) CELL-LINE | (1) CERVIX | (1) HELA | (1) LIVER | (2) OTHER | (1) SKIN | (1) XRN.ip |
| TAAAAGTACTGTTCTTAGTTTCTATTTTAATCTTATTCATATACAAGTGCCTTTGTAATTTAGTAAATATCATTTTTGGTATACAGCATAAATTTCCTTTTTATAAAGATCTGAGTTTTTAACTTTGCTGTCACTTTCTGTGTTGTGTGAGTTAAATATTTTAATTTTTTCTTTTTTTATATTTAAATTTTTTATTCTAGTTCTAATTGCTAATCCAGTATTTGCGGATAGCTCCAAACTGGGATATGTA ...........................................................................................................(((..((((.((((((((......(((.....)))......)))))))).))))..))).................................................................................... ...........................................................................................................108............................................................................187............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189785 | SRR040010(GSM532895) G529N. (cervix) | SRR189787 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTCT................................................................... | 22 | 178.00 | 0.00 | 143.00 | 35.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTCTA.................................................................. | 23 | 17.00 | 0.00 | 11.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................AATTTTTTCTTTTTTTATTCTA.................................................................. | 22 | 5.00 | 0.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TTTTTCTTTTTTTATATTTAAATTTTTTATTCTAG.................................................. | 35 | 1 | 4.00 | 4.00 | - | - | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTCG................................................................... | 22 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................TTTCTATTTTAATCTTATTCATATACAAG........................................................................................................................................................................................................... | 29 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - |
| ......TACTGTTCTTAGTTTCTATTTTAA............................................................................................................................................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TTAAATTTTTTATTCTAG.................................................. | 18 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TTCTTAGTTTCTATTTCAA............................................................................................................................................................................................................................ | 19 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTCA................................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................ATATTTTAATTTTTTCTTTTTTTATAC.................................................................... | 27 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................TTAAATATTTTAATTTTTTCTTT............................................................................ | 23 | 5 | 1.80 | 1.80 | - | - | - | 0.80 | 0.80 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................AAATATTTTAATTTTTTCTTT............................................................................ | 21 | 5 | 1.40 | 1.40 | - | - | - | 0.20 | 0.60 | 0.60 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TTAAATATTTTAATTTTTTCCTT............................................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................TTTTAATTTTTTCTTTTTTTATTTTC.................................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................TTTTTCTTTTTTTATATTTTCTC.............................................................. | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......ACTGTTCTTAGTTTCTATTTTAA............................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................GAGTTTTTAACTTTGCTCC....................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AAATATTTTAATTTTTTCTTTTC.......................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................CTTTTTTTATATTTAAATTTTTTATTCTAG.................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTGT................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................TTAAATATTTTAATTTTTTCTCTTT.......................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTAA................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTTTTATATTTAAATTTTTTATTCTAG.................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TATATTTAAATTTTTTATTCTAGA................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TATTTAAATTTTTTATTCTAGAA................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTTTATATTTAAATTTTTTATTCTAG.................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................CATAAATTTCCTTTTACT.................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............TCTTAGTTTCTATTTTAAGCT......................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................TTAAATATTTTAATTTTTTCTTTTT.......................................................................... | 25 | 5 | 1.00 | 1.00 | - | - | - | 0.20 | 0.40 | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................ATTTTAATTTTTTCTTTCCTT........................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................AGTTAAATATTTTAATTTTTTCTTTTT.......................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................ATTTTAATTTTTTCTTTTTTACT...................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ....................................................................................................................................................................TTTTTTCTTTTTTTATACGT.................................................................. | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............TTAGTTTCTATTTTAATCCTAC...................................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................TAATTTTTTCTTTTTTTATTCTT.................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........TTCTTAGTTTCTATTCTAA............................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TTTTTATATTTAAATTTTTTATTCTAG.................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................AATATTTTAATTTTTTCTTTTTTA........................................................................ | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................TTTTATTCTAGTTCTGTT........................................... | 18 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTTATATTTAAATTTTCCTT....................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............TAGTTTCTATTTTAACGT......................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................TTTAATTTTTTCTTTTTTATTG..................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................TAAATATTTTAATTTTTTCTTT............................................................................ | 22 | 5 | 0.80 | 0.80 | - | - | - | 0.60 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TAAATTTTTTATTCTAG.................................................. | 17 | 4 | 0.75 | 0.75 | - | - | - | - | 0.50 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................ATTTGCGGATAGCTCCAAACTGGGATAT... | 28 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................ATTTGCGGATAGCTCCAAACTGGG....... | 24 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ...........................................................................................................................................................................................................................ATTTGCGGATAGCTCCAAACTG......... | 22 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ...........TTCTTAGTTTCTATTTTAA............................................................................................................................................................................................................................ | 19 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TTTTCTTTTTTTATATTTAAA............................................................... | 21 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| ..................TTTCTATTTTAATCTTAT...................................................................................................................................................................................................................... | 18 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................AATATTTTAATTTTTTCTTTTT.......................................................................... | 22 | 5 | 0.20 | 0.20 | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TTTTTTATATTTAAATTTT........................................................... | 19 | 9 | 0.11 | 0.11 | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TAAAAGTACTGTTCTTAGTTTCTATTTTAATCTTATTCATATACAAGTGCCTTTGTAATTTAGTAAATATCATTTTTGGTATACAGCATAAATTTCCTTTTTATAAAGATCTGAGTTTTTAACTTTGCTGTCACTTTCTGTGTTGTGTGAGTTAAATATTTTAATTTTTTCTTTTTTTATATTTAAATTTTTTATTCTAGTTCTAATTGCTAATCCAGTATTTGCGGATAGCTCCAAACTGGGATATGTA ...........................................................................................................(((..((((.((((((((......(((.....)))......)))))))).))))..))).................................................................................... ...........................................................................................................108............................................................................187............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189785 | SRR040010(GSM532895) G529N. (cervix) | SRR189787 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................AATATTTTAATTTTTTCTTTTTA......................................................................... | 23 | 5 | 23.00 | 0.00 | - | - | 23.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TATCCGCAAATACTG.................... | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................TTAGTAAATATCATTCAA............................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................CCAGTATTTGCGGATACGT................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTAAATTTTTTATTCTCACC................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ...........................................................................................................................................GTGTTGTGTGAGTTAAG.............................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................ATTAAAATATTTAACTC..................................................................................... | 17 | 8 | 0.12 | 0.12 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |