ID: uc001ymi.1_intron_20_0_chr14_103433508_r.5p
GENE: CDC42BPB(16)
chr14:103434390-103434639-


(1)
AGO2.ip
(1)
B-CELL
(6)
BRAIN
(7)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
LIVER
(5)
OTHER
(1)
SKIN

Sense strand
GAGCGATGCTGTTTGATGAAAACAAGAAGCTAACTGCTGAAAATGAAAAGGTAATTAATTCAAAGTACCTGAGTTAGCACTTTGTGTGGAAGTTGTAATTTAAAAAAAAATTATTTTTAATTTGTGTGGGTACATAGTAGGTATATATATTTATGGGGGAGTAGAATGTCGTCATTCTTGAGTCTTGGAAGTTTGGTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCTCAGGCTGGAGTGCAGTGA
.......................................................................................................................((..(((((.((((.......)))).)))))..)).........(((((....))))).........................................................................
.......................................................................................................................120......................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM532890(GSM532890)
G576T. (cervix)
.........................................................................................................................................................TGGGGGAGTAGAATGTATAG.............................................................................2086.000.0080.00--4.00---------------1.00------------1.00------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTAG.............................................................................2017.000.0017.00--------------------------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGGCTC.....................................2215.000.00-9.006.00------------------------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGGCT......................................218.000.00-5.003.00------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTTG.............................................................................207.000.007.00--------------------------------------
................................................................................................................................................................................................TTGGTTTTTTTTTTTTGGCT......................................206.000.00-4.001.00----------------------------------1.00-
................................................................................................................................................................................................TTGGTTTTTTTTTTTTGGCTC.....................................215.000.00-5.00-------------------------------------
.AGCGATGCTGTTTGATG........................................................................................................................................................................................................................................1715.005.00----5.00----------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATTG.............................................................................203.000.003.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTAT.............................................................................203.000.003.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTAGAG.............................................................................203.000.003.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATGG.............................................................................203.000.003.00--------------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTGCGC..........................................192.000.00-2.00-------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTA..............................................................................192.000.001.00---------------------1.00----------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTGG.............................................................................202.000.002.00--------------------------------------
....................AACAAGAAGCTAACTGCTGAAAATG.............................................................................................................................................................................................................2512.002.00-----------2.00---------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATAT.............................................................................202.000.002.00--------------------------------------
...........................AGCTAACTGCTGAAAATGAAAAG........................................................................................................................................................................................................2312.002.00---------2.00-----------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATAA.............................................................................202.000.002.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTGTAG.............................................................................202.000.002.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTCTAG.............................................................................202.000.002.00--------------------------------------
...................................................................................................................................................................................................................................TCGCTCAGGCTGGAGTGCAGTGCGCA262.000.00-2.00-------------------------------------
.................................................................................................................................................................................................TGGTTTTTTTTTTTTGAGATGGGGGC...............................261.000.00-1.00-------------------------------------
.AGCGATGCTGTTTGATGAAAACAAG................................................................................................................................................................................................................................2511.001.00----------------1.00----------------------
.....................................................................................................................................................................................................................................GCTCAGGCTGGAGTGCAGTGA2101.001.00-----1.00---------------------------------
........................AGAAGCTAACTGCTGAAA................................................................................................................................................................................................................1811.001.00--------------------1.00------------------
............................................................................................................................TGTGGGTACATAGTAGGT............................................................................................................1801.001.00------1.00--------------------------------
.................................................................................................................................................................TAGAATGTCGTCATTTGTT......................................................................191.000.001.00--------------------------------------
...................................................................................................................................................................................................................................TCGCTCAGGCTGGAGTGCAGTGCGCG261.000.00-1.00-------------------------------------
......................................................................................................................................................................................................................................CTCAGGCTGGAGTGCAGTGCGCA231.000.00--1.00------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTGT.............................................................................201.000.001.00--------------------------------------
...................................................................................................................................................................................................................................TCGCTCAGGCTGGAGTGCACCAG231.000.00-1.00-------------------------------------
..........................................................................................................................................................GGGGGAGTAGAATGTTT...............................................................................171.000.00-------------1.00-------------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGGGCT.....................................221.000.00--1.00------------------------------------
..................................................................................................................................................................................................................................GTCGCTCAGGCTGGAGTGCTCTG.231.000.00-----------------------------------1.00---
..............................................................................................................................................................................................GTTTGGTTTTTTTTTTTTGAGG......................................221.000.00-1.00-------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGAGTG..............................................................................191.000.00------------1.00--------------------------
..............................................................................................................................TGGGTACATAGTAGGTATATATATTTACGG..............................................................................................301.000.00-------1.00-------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTACCG.............................................................................201.000.001.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATCG.............................................................................201.000.001.00--------------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTCTTT.......................................221.000.00-1.00-------------------------------------
.......................................................................................................................................................................................................................AGTCTCGCTCTGTCGCTCAGGAG............231.000.00-------------1.00-------------------------
...................................................................................................................................................................................................................................TCGCTCAGGCTGGAGTGCACTC.221.000.00----------1.00----------------------------
.................................................................................................................................................................................................TGGTTTTTTTTTTTTGGGGC.....................................201.000.00-1.00-------------------------------------
....................................................................................................................................CATAGTAGGTATATATATAAAA................................................................................................221.000.00----------1.00----------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTTCTTG......................................231.000.00-1.00-------------------------------------
.....................................................................TGAGTTAGCACTTTGTGCTTT................................................................................................................................................................211.000.00------------------------1.00--------------
............................................................................................................................................................................................AAGTTTGGTTTTTTTTTTTCGAG.......................................231.000.00--1.00------------------------------------
...............................................................................................................................................................................................................................TCTGTCGCTCAGGCTGGAGTGCAGTCGCC291.000.00-1.00-------------------------------------
................................................................................................................................................................................................TTGGTTTTTTTTTTTTGGTCG.....................................211.000.00-1.00-------------------------------------
.................................................................................................................................................................................................TGGTTTTTTTTTTTTGGATG.....................................201.000.00--1.00------------------------------------
..............................................................................................................................................................................................GTTTGGTTTTTTTTTTTTACCG......................................221.000.00--1.00------------------------------------
................................................................................................................................................................................................TTGGTTTTTTTTTTTTGAGTTAT...................................231.000.00-1.00-------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATG..............................................................................191.000.001.00--------------------------------------
.....ATGCTGTTTGATGAAAAAAAA................................................................................................................................................................................................................................211.000.00----------------------------1.00----------
........................................................................................................................................................................................................................GTCTCGCTCTGTCGCTCAGGCTGGAGT.......2701.001.00------1.00--------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTATAC.............................................................................201.000.001.00--------------------------------------
...................................................................................................................................................................................................................ATGGAGTCTCGCTCTGTCGCTCAGGCAGG..........291.000.00--1.00------------------------------------
.......................................................................................................AAAAAAATTATTTTTAATGCTG.............................................................................................................................221.000.001.00--------------------------------------
..........................................................................................................................................................................................................................CTCGCTCTGTCGCTCAGGCTG...........2101.001.00----------------------------------1.00----
.................................................................................................................................................................................................................................TGTCGCTCAGGCTGGAGTGCACGGC251.000.00--1.00------------------------------------
.......................................................................................................................................................................................................................................TCAGGCTGGAGTGCAGTGCGCA221.000.00--1.00------------------------------------
..............................................................................................................................................................................................................TTGAGATGGAGTCTCGCTCTGA......................221.000.00------1.00--------------------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGGCC......................................211.000.00--1.00------------------------------------
.........................................................................................................................................................................................TGGAAGTTTGGTTTTTTTTTTTC..........................................231.000.00--1.00------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTCGAATG...........................................................................221.000.00--------------------------1.00------------
...................................................................................................................................................................................GAGTCTTGGAAGTTTGGTT....................................................1911.001.00-----------------------------1.00---------
.................................................................................................................................................................................................................................TGTCGCTCAGGCTGGAGTGCAGTGCGTG281.000.00-1.00-------------------------------------
..........................................................................................................................................................GGGGGAGTAGAATGTTTAA.............................................................................191.000.001.00--------------------------------------
.................................................................................................................................................................................................................................TGTCGCTCAGGCTGGAGTGCAGTCGCC271.000.00--1.00------------------------------------
..GCGATGCTGTTTGATGAAAACAAGA...............................................................................................................................................................................................................................2511.001.00------------------------------1.00--------
.........................................................................................................................................................TGGGGGAGTAGAATGGATA..............................................................................191.000.00---------------1.00-----------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTAT...............................................................................181.000.00--------1.00------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTCGT........................................211.000.00--1.00------------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTTGGCGC.....................................241.000.00-1.00-------------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTTGCG.......................................221.000.00--1.00------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTTG..............................................................................191.000.001.00--------------------------------------
..........................................................................................................................................................GGGGGAGTAGAATGTGTAG.............................................................................191.000.00------------1.00--------------------------
..........................................................................................................................................................GGGGGAGTAGAATGTATAA.............................................................................191.000.001.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTTCTG.............................................................................201.000.001.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGGAAA..............................................................................191.000.00--------1.00------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGGAA...............................................................................181.000.00---------------------1.00-----------------
...........................AGCTAACTGCTGAAAATG.............................................................................................................................................................................................................1811.001.00------------------------------------1.00--
..........................................................................................................................................................GGGGGAGTAGAATGTAAAG.............................................................................191.000.001.00--------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTAAAG.............................................................................201.000.001.00--------------------------------------
.................................................................................................................................................................................................TGGTTTTTTTTTTTTGGGTC.....................................201.000.00-1.00-------------------------------------
.............................................................................................................................................................................................................TTTGAGATGGAGTCTCGCTCTGTCGCGCG................291.000.00--1.00------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGCA................................................................................171.000.00-----------------1.00---------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGGCCC.....................................221.000.00-1.00-------------------------------------
..............................................................................................................................TGGGTACATAGTAGGTATATACAAG...................................................................................................251.000.00-------1.00-------------------------------
.............................................................................................................................................................................................AGTTTGGTTTTTTTTTTTTGCGC......................................231.000.00-1.00-------------------------------------
..............................................................................................................................................................GAGTAGAATGTCGTCGGT..........................................................................181.000.00-------------------------1.00-------------
....................AACAAGAAGCTAACTGCTGAA.................................................................................................................................................................................................................2111.001.00-------------------------------1.00-------
.........................................................................................................................................................TGGGGGAGTAGAATGTCAAG.............................................................................201.000.001.00--------------------------------------
...................................................................................................................................................................................................................................TCGCTCAGGCTGGAGTGCAGTGATACC271.000.00--1.00------------------------------------
.................................................................................................................................................................................................................AGATGGAGTCTCGCTCTGTCGCTCAGGCCGG..........311.000.00-1.00-------------------------------------
.........................................................................................................................................................TGGGGGAGTAGAATGTAGCG.............................................................................201.000.001.00--------------------------------------
.........................................................................................................................................................................................TGGAAGTTTGGTTTTTTTT..............................................1920.500.50--0.50------------------------------------
.................................CTGCTGAAAATGAAAAG........................................................................................................................................................................................................1740.250.25--------------------------------------0.25

Antisense strand
GAGCGATGCTGTTTGATGAAAACAAGAAGCTAACTGCTGAAAATGAAAAGGTAATTAATTCAAAGTACCTGAGTTAGCACTTTGTGTGGAAGTTGTAATTTAAAAAAAAATTATTTTTAATTTGTGTGGGTACATAGTAGGTATATATATTTATGGGGGAGTAGAATGTCGTCATTCTTGAGTCTTGGAAGTTTGGTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCTCAGGCTGGAGTGCAGTGA
.......................................................................................................................((..(((((.((((.......)))).)))))..)).........(((((....))))).........................................................................
.......................................................................................................................120......................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189783SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM532890(GSM532890)
G576T. (cervix)
..................................................................................................................................................................................................................GATGGAGTCTCGCTCTGTCGCTCCC............... 253.000.00--3.00------------------------------------
.....................................................................................................................................................................................................................GGAGTCTCGCTCTGTCGCTTCCT.............. 231.000.00-1.00-------------------------------------
...............................................................................................................................................................................................................TGAGATGGAGTCTCGCTCTGTCGCTGG................ 271.000.00-1.00-------------------------------------
..............................................................................................................................................................................................GTTTGGTTTTTTTTTTTTGAGG...................................... 221.000.00---1.00-----------------------------------
.........................................................................................................................TTGTGTGGGTACATAGCCG.............................................................................................................. 191.000.00---1.00-----------------------------------
...................................................................................................................................................................................................................ATGGAGTCTCGCTCTGTCGCTCAGAAC............ 271.000.00---------------------------------1.00-----
...............................................................................................................................................................................TCTTGAGTCTTGGAACAC......................................................... 181.000.00--------------1.00------------------------
.................................................................................................................................................................................................................AGATGGAGTCTCGCTCTGTCGCTTG................ 251.000.00--1.00------------------------------------
........................................................................................................................................................................................................................CACTCCAGCCTGAGCGACAGAGCGAGAC...... 2801.001.00-----------------------1.00---------------
...............................................................................................................................................................................................................................TCTGTCGCTCAGGCTGGAGTGCAGTGACTG 301.000.00-1.00-------------------------------------
.....................................................................................................................................................................................................................GGAGTCTCGCTCTGTCGCTCATC.............. 231.000.00--1.00------------------------------------
...............................................................................................................................................................................................TTTGGTTTTTTTTTTTTGAGATGAAAT................................ 271.000.00---1.00-----------------------------------
.....................................................................................................................................................................................................................GGAGTCTCGCTCTGTCGCTCAGGCTCCTC........ 291.000.00--1.00------------------------------------
................................................................................................................................................................................................................GAGATGGAGTCTCGCTCTGTCGCTTGG............... 271.000.00--1.00------------------------------------
.....................................................................................................................................................................................................................CCTGAGCGACAGAGCGAGACTCC.............. 2301.001.00------1.00--------------------------------
............................................................................................................................................................................................................................AGCCTGAGCGACAGAGCG............ 1801.001.00-----1.00---------------------------------
...........................................................................................................................................................................................................................CACTCCAGCCTGAGCGACAGAGCGA...... 2501.001.00-----1.00---------------------------------
.....................................................................................................................................................................................................................GCCTGAGCGACAGAGCGAGACTCC............. 2401.001.00-----1.00---------------------------------
....................................................................................................TAAAAAAAAATTATTTACA................................................................................................................................... 191.000.00-------1.00-------------------------------
.........................................................................................................................................................................................................................AGCCTGAGCGACAGAGCGAGA............ 2101.001.00------------------1.00--------------------
................................................................................................................................................................................................................GAGATGGAGTCTCGCTCTGTCGCTCC................ 261.000.00--1.00------------------------------------
..........................................................................................................................................................................................................................CTCGCTCTGTCGCTCAGGCTGGAGTCCTG... 291.000.00-1.00-------------------------------------
......................................................................................................................................................................................................................GAGTCTCGCTCTGTCGCTAGCC.............. 221.000.00--1.00------------------------------------
....................................................................................................................................................................................................................TGGAGTCTCGCTCTGTCGCGCGC............... 231.000.00--1.00------------------------------------