ID: uc001ylj.2_intron_3_0_chr14_102700127_r.3p
GENE: (2)
chr14:102700077-102700326-


(5)
B-CELL
(1)
BRAIN
(2)
BREAST
(11)
CELL-LINE
(4)
HEART
(2)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGCTGGTTAATTTTGCCACATATCACCTTGTGATGTTTACGGTAGCAGCTAGATGAACAGCAGGAACTTACAGAAGGGTGTAGGTAAAGTTTGTTTATGCTTCCCACGATCTCCCCTTGTGCGGTCCAGATGGTTTGTAATTGGTGAGGTCTGTTGGCTCTGCCCTAACACTGACCACAGTGCCCCTTCTGCCCTTCCAGTCTGCAGCCCCTCTTTCCTGGAGTAAATGAACTGGACCAAATCTCAAAAA
............................................................(((..(((((((......))))))).............(((...((.((((((.((...(((((.((....)).)))))...)).))))))))..))).)))........................................................................................
............................................................61....................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................TGGTGAGGTCTGTTGTTT...........................................................................................1824.000.007.002.002.001.002.002.001.00-1.001.00-1.00-----1.001.00----1.00---1.00---
.............................................................................................................................................TGGTGAGGTCTGTTGTTTT..........................................................................................1921.000.003.006.002.003.001.002.002.00-1.001.00---------------------
.................................................................................................................................................................................................................................AATGAACTGGACCAACA........172.000.00-------2.00-----------------------
.....................................................................................................................................................TCTGTTGGCTCTGCCCTAACACTGAC...........................................................................2611.001.00--------------------1.00----------
.............................................................................................................................................TGGTGAGGTCTGTTGAATA..........................................................................................191.000.001.00------------------------------
.................................................................................................................................................GAGGTCTGTTGGCTCTGCCCT....................................................................................2111.001.00----------1.00--------------------
..............................................AGCTAGATGAACAGCAGGAACTTAC...................................................................................................................................................................................2511.001.00----------------------1.00--------
............................................................................................................................................................................................................................GAGTAAATGAACTGGACCAAATC.......2311.001.00--------------------------1.00----
.............................................................................................................................................TGGTGAGGTCTGTTGAATT..........................................................................................191.000.001.00------------------------------
.......................................CGGTAGCAGCTAGATGAACAGCAGGA.........................................................................................................................................................................................2611.001.00-------------------------1.00-----
..............................................................................................................................................GGTGAGGTCTGTTGGTTA..........................................................................................181.000.00----1.00--------------------------
......................................................................................................................................................CTGTTGGCTCTGCCCGC...................................................................................171.000.00-------------1.00-----------------
.............................................................................................................................................TGGTGAGGTCTGTTGCTTT..........................................................................................191.000.001.00------------------------------
.................................................................ACTTACAGAAGGGTGTAGA......................................................................................................................................................................191.000.00--------------1.00----------------
.................................................TAGATGAACAGCAGGA.........................................................................................................................................................................................1640.250.25-----------------------------0.25-
....................................................................................................................................................GTCTGTTGGCTCTGCC......................................................................................1650.200.20----------0.20--------------------

Antisense strand
TGCTGGTTAATTTTGCCACATATCACCTTGTGATGTTTACGGTAGCAGCTAGATGAACAGCAGGAACTTACAGAAGGGTGTAGGTAAAGTTTGTTTATGCTTCCCACGATCTCCCCTTGTGCGGTCCAGATGGTTTGTAATTGGTGAGGTCTGTTGGCTCTGCCCTAACACTGACCACAGTGCCCCTTCTGCCCTTCCAGTCTGCAGCCCCTCTTTCCTGGAGTAAATGAACTGGACCAAATCTCAAAAA
............................................................(((..(((((((......))))))).............(((...((.((((((.((...(((((.((....)).)))))...)).))))))))..))).)))........................................................................................
............................................................61....................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................CACAAGGGGAGATCGTGGGAAGCAT................................................................................................................................. 2511.001.00---------------------1.00---------
.............................................................................................................................................................................................TGCCCTTCCAGTCTGCAAGAT........................................ 211.000.00------------------------1.00------
...........................................................................................................................................................................................................GCAGCCCCTCTTTCCTGCGC........................... 201.000.00----------------1.00--------------
..................................................................................................................................TGGTTTGTAATTGGTATCC..................................................................................................... 191.000.00---------------1.00---------------
....................................................................................................................................................................................................CCAGTCTGCAGCCCCCTAG................................... 191.000.00-------------------1.00-----------
..........................................................................................................................................................................................TTCTGCCCTTCCAGTCTA.............................................. 181.000.00------------1.00------------------
................TACCGTAAACATCACAAGGTGATATGTG.............................................................................................................................................................................................................. 2830.330.33----------------------------0.33--
...................................................................................................................................................................GTGGTCAGTGTTAGG........................................................................ 1590.110.11------------------------------0.11