ID: uc001war.1_intron_8_0_chr14_21863279_r
GENE: (28)
chr14:21863229-21863506-


(1)
AGO2.ip 		(4)
B-CELL 		(10)
BRAIN 		(15)
BREAST 		(7)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(3)
LIVER 		(6)
OTHER 		(8)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCCCTTGATGATGATGGATGAGGAGATCTCAGTGATTGATGGAGATGAAGGTAAACTTCTAGGTCAACTAGTATAATTCTGTGTGGGGTGGTGGGTTGGGGAATTATTCACTGAATTCTGTCCTATCCTGGGATTTCTAAGAGCTTTGCCTTTGGGTGGGTTAAAATACTAGTATTGCCTCTACTACCCTTGCTATACTTCCTATTCATTCTACTTTGTTTTCCACAGCCCAGGTGACCCAACAGCCAGGCCATTTATTCTGGCCTCCGGGCTCTGCC
................................................................................((((((((((((((...(((.(((.....((((.(((.((.(((((((.(((................)))..))))))).)).)))..))))))).)))))))))))))....))))................................................................................
..............................................................................79...............................................................................................................................208....................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577744(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...................................................................................TGGGGTGGTGGGTTGTGT.................................................................................................................................................................................1831.000.003.00-1.002.002.001.001.003.001.002.001.002.00--1.00-2.00----1.001.00--------1.00-1.00------1.00--------1.00----1.001.001.00----
...................................................................................TGGGGTGGTGGGTTGTGTG................................................................................................................................................................................199.000.001.00--1.00-1.001.00-----------2.00-----1.00--------------1.00--1.00------------------
...................................................................................TGGGGTGGTGGGTTGTGTT................................................................................................................................................................................198.000.002.00--1.00-1.001.00---1.001.00---------1.00---------------------------------------
...................................................................................TGGGGTGGTGGGTTGTAT.................................................................................................................................................................................186.000.00-1.001.00-3.00-------1.00------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTATT................................................................................................................................................................................195.000.001.001.00-1.00--1.00--------1.00---------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTTT.................................................................................................................................................................................184.000.00-2.00------1.00-----------------------------1.00----------------------
...................................................................................TGGGGTGGTGGGTTGTGTA................................................................................................................................................................................194.000.00-2.00---1.00--------------1.00----------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGTGGT..............................................................................................................................................................................214.000.00-1.002.00--------------------1.00-------------------------------------
...................................................................................TGGGGTGGTGGGTTGGATAG...............................................................................................................................................................................203.000.00-------1.00---------1.00-------1.00-----------------------------------
...................................................................................TGGGGTGGTGGGTTGTATG................................................................................................................................................................................193.000.00-1.00--1.00----------1.00---------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTC..................................................................................................................................................................................172.000.001.00-------------------1.00----------------------------------------
...................................................................................TGGGGTGGTGGGTTGTGGG................................................................................................................................................................................192.000.00------------1.00--------------------------------------1.00---------
...................................................................................TGGGGTGGTGGGTTGTTGG................................................................................................................................................................................192.000.00---1.00----------1.00----------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTA..................................................................................................................................................................................172.000.00------1.00----------------1.00-------------------------------------
...................................................................................TGGGGTGGTGGGTTGTT..................................................................................................................................................................................172.000.00--------2.00----------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGGGTA..............................................................................................................................................................................211.000.00----------------------------1.00--------------------------------
.............ATGGATGAGGAGATCTCA.......................................................................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------
...................................................................................TGGGGTGGTGGGTTGTGCG................................................................................................................................................................................191.000.00-----1.00-------------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTGAT................................................................................................................................................................................191.000.001.00------------------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGTGGG...............................................................................................................................................................................201.000.00--1.00----------------------------------------------------------
................................................................................................................................................................................................CTATACTTCCTATTCATTCTACTTTG............................................................2611.001.00---------------------------------------------1.00---------------
...................................................................................TGGGGTGGTGGGTTGGCTG................................................................................................................................................................................191.000.00--1.00----------------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGATGG...............................................................................................................................................................................201.000.00----------1.00--------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGTATA................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGGAGTT.............................................................................................................................................................................221.000.00---------1.00---------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGGAGC..............................................................................................................................................................................211.000.00--------------------------1.00----------------------------------
...................................................................................TGGGGTGGTGGGTTGGGTGTT..............................................................................................................................................................................211.000.00--------------1.00----------------------------------------------
....................AGGAGATCTCAGTGATTGATGGA...........................................................................................................................................................................................................................................2311.001.00-----------------------------------------------------1.00-------
...................................................................................TGGGGTGGTGGGTTGGGGAGTTT............................................................................................................................................................................231.000.00--1.00----------------------------------------------------------
................................................AGGTAAACTTCTAGGTCA....................................................................................................................................................................................................................1811.001.00-------------------------------------1.00-----------------------
...........................................................................................................................................................................................CCTTGCTATACTTCCTA..........................................................................1711.001.00-----------------------------------------1.00-------------------
....................................................................................GGGGTGGTGGGTTGGGGGGAT.............................................................................................................................................................................211.000.00--------------------------------1.00----------------------------
...................................................................................TGGGGTGGTGGGTTGGGGGTTT.............................................................................................................................................................................221.000.00--1.00----------------------------------------------------------
.................ATGAGGAGATCTCAGTGA...................................................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00------------
............................................................................................................................................................................................CTTGCTATACTTCCTATT........................................................................1811.001.00---------------------------------------------------------1.00---
........................................................................................................................................................................................................CCTATTCATTCTACTTTGTTTTCCACAG..................................................2811.001.00--------------------------------------------------1.00----------
...................................................................................TGGGGTGGTGGGTTGGCTTC...............................................................................................................................................................................201.000.00----------------------1.00--------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGGGGTT.............................................................................................................................................................................221.000.00--1.00----------------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGCAG...............................................................................................................................................................................201.000.00------------------------------1.00------------------------------
..................................................................................GTGGGGTGGTGGGTTGTAA.................................................................................................................................................................................191.000.001.00------------------------------------------------------------
...................................................................................TGGGGTGGTGGGTTGGGGGGT..............................................................................................................................................................................211.000.00-1.00-----------------------------------------------------------
..........ATGATGGATGAGGAGATT..........................................................................................................................................................................................................................................................181.000.00----------------------------------------------1.00--------------
...................................................................................TGGGGTGGTGGGTTGTAG.................................................................................................................................................................................181.000.00-----1.00-------------------------------------------------------
............GATGGATGAGGAGATCTCAGT.....................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------------1.00--
.........................ATCTCAGTGATTGATGGAGATTT......................................................................................................................................................................................................................................231.000.00------------------------------------1.00------------------------
...................................................................................TGGGGTGGTGGGTTGTAA.................................................................................................................................................................................181.000.00------------------------1.00------------------------------------
....................................................................................GGGGTGGTGGGTTGGGGGGTG.............................................................................................................................................................................211.000.00------------1.00------------------------------------------------
.................................GATTGATGGAGATGAAG....................................................................................................................................................................................................................................1720.500.50-----------------------------------------------------------0.50-
...................................................................................................................................GATTTCTAAGAGCTTTG..................................................................................................................................1730.330.33------------------------------------------------------------0.33

Antisense strand
TCCCTTGATGATGATGGATGAGGAGATCTCAGTGATTGATGGAGATGAAGGTAAACTTCTAGGTCAACTAGTATAATTCTGTGTGGGGTGGTGGGTTGGGGAATTATTCACTGAATTCTGTCCTATCCTGGGATTTCTAAGAGCTTTGCCTTTGGGTGGGTTAAAATACTAGTATTGCCTCTACTACCCTTGCTATACTTCCTATTCATTCTACTTTGTTTTCCACAGCCCAGGTGACCCAACAGCCAGGCCATTTATTCTGGCCTCCGGGCTCTGCC
................................................................................((((((((((((((...(((.(((.....((((.(((.((.(((((((.(((................)))..))))))).)).)))..))))))).)))))))))))))....))))................................................................................
..............................................................................79...............................................................................................................................208....................................................................
SizePerfect hitTotal NormPerfect NormTAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR343335TAX577744(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
....................................TGATGGAGATGAAGGTTG................................................................................................................................................................................................................................ 184.000.00-------------3.00-------------1.00---------------------------------
......................................................................................................................................................................................................................TTTGTTTTCCACAGCAAAA............................................. 192.000.00-------------------------------------------1.00---1.00-------------
..................................................................................................................ATTCTGTCCTATCCTGGA.................................................................................................................................................. 182.000.00-----------------------------1.00----------------------1.00--------
.........................................................................................................ATTCACTGAATTCTGCATC.......................................................................................................................................................... 191.000.00--------------------------------------------1.00----------------
.........................................................................................................................................................................................................................GTTTTCCACAGCCCATGGG.......................................... 191.000.00-----------------------------------1.00-------------------------
.........................................................................................................ATTCACTGAATTCTGCT............................................................................................................................................................ 171.000.00-----------------1.00-------------------------------------------
...........................................................................................................................................................................................................................TTTCCACAGCCCAGGGGCT........................................ 191.000.00-------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................CTTTGTTTTCCACAGATG............................................... 181.000.00----------------------------------1.00--------------------------
.......................................................................................................CAGAATTCAGTGAATAA.............................................................................................................................................................. 1720.500.50-------------------------0.50-----------------------------------