ID: uc001vmd.3_intron_26_0_chr13_95863036_r.5p
GENE: (4)
chr13:95886664-95886913-


(4)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(19)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(6)
OTHER 		(2)
RRP40.ip 		(6)
SKIN

Sense strand
GTGCTGGGATGAGGTTACGAGTAGCCATGTGCCATATGATTTATCGGAAGGTAAGTGACATTCAGCATTAAACATGTACCTCACCTGAAGCATCAGAAGCATTCTGAGGAAGTTTTATGTAAATTAAATACTGCATAAATAGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCTAAAAAAAGAAAAACGAAGAAAACTTCTGTAAATAGAATCATTTACACCTTACTAGAGAAGCTTGC
.........................................................................................((.(((((.....)))))((....((((((((..........))))))))...))...)).....................................................................................................
......................................................................................87.......................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189785DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PAZD5SRR189782SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................AATAGCCACTGCACTCCAG..............................................................................................19037.0037.0016.00-2.005.004.00-5.00----3.00-------2.00--------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTG..........................................................................................23016.0016.006.00-2.003.004.00-1.00---------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGAG........................................................................................25011.0016.003.00-4.002.001.00------1.00----------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCC............................................................................................2109.009.00---1.00--2.00---3.00--2.001.00-------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCGGGC........................................................................................2409.001.00-9.00--------------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCT...........................................................................................2208.008.003.00-1.001.001.00-2.00---------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCCTG.............................................................................................2008.002.00--------6.002.00------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCGGGC........................................................................................237.000.00-7.00--------------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTG..........................................................................................2106.006.002.00-1.002.001.00-----------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGAG........................................................................................2405.002.003.00--------------2.00------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCGAGC........................................................................................235.000.00-3.00---2.00----------------------------------
.......................GCCATGTGCCATATGATTTATCGGAAGG.......................................................................................................................................................................................................2814.004.00-------4.00--------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCGAGC........................................................................................2404.001.00-3.00---1.00----------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGA.........................................................................................2404.0016.00--2.00-1.00------------1.00----------------------
.........................................................................................................................................AATAGCCACTGCACTCCA...............................................................................................1803.003.001.00-1.00--------------1.00----------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGC.............................................................................................2003.003.002.00-1.00-------------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTGG.........................................................................................2203.003.00--2.00-------1.00-----------------------------
...............................CCATATGATTTATCGGAAGG.......................................................................................................................................................................................................2013.003.00-------3.00--------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCGAGC........................................................................................2503.009.00-3.00--------------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGAGC.......................................................................................2603.0016.002.00--------------1.00------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCGGGC........................................................................................2503.009.00-3.00--------------------------------------
.............................TGCCATATGATTTATCGGA..........................................................................................................................................................................................................1912.002.00----------------2.00-----------------------
...........................................................................................................................................TAGCCACTGCACTCCAGC.............................................................................................1802.002.00----1.00--------1.00--------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCGACC........................................................................................232.000.00------------2.00---------------------------
.........................................................................................................................................AATAGCCACTGCACTCC................................................................................................1702.002.001.00-----------------1.00---------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTG..........................................................................................2202.002.001.00--1.00------------------------------------
.........................................................................................................................................AATAGCCACTGCACTC.................................................................................................1601.001.00--------------1.00-------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGA.........................................................................................2301.002.00--------------1.00-------------------------
.................................................................................................................................................................................................AAAAACGAAGAAAACCTGG......................................191.000.00-----------------------1.00----------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTGAGC.......................................................................................2401.006.00----------------------------------1.00-----
.........................................................................................................................................AATAGCCACTGCACTCCAGCCGGGT........................................................................................2501.009.00-1.00--------------------------------------
........................................................................................................................................AAATAGCCACTGCACTCCA...............................................................................................1901.001.00------1.00---------------------------------
..............................GCCATATGATTTATCGGA..........................................................................................................................................................................................................1811.001.00------------------------------1.00---------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGATC.......................................................................................2601.0016.00-----------------------------------1.00----
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGAT........................................................................................2401.002.00-------------------------1.00--------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCGGAC........................................................................................2501.009.00-1.00--------------------------------------
..........................................................................................................................................ATAGCCACTGCACTCC................................................................................................1601.001.00------------------1.00---------------------
.............................TGCCATATGATTTATCGGAAGG.......................................................................................................................................................................................................2211.001.00----------------------------1.00-----------
.......................................................................................................................................................TCCAGCCTGGGTGACAGAGCAAGACCCGCCT....................................................................311.000.00-1.00--------------------------------------
............................................................................................................................................AGCCACTGCACTCCAGCCTGGGTGACAGTAG...............................................................................311.000.00-----1.00----------------------------------
.......................................................................................................................................TAAATAGCCACTGCACTCCC...............................................................................................2001.001.001.00---------------------------------------
......................AGCCATGTGCCATATGATTTATCGGA..........................................................................................................................................................................................................2611.001.00-------------------------------1.00--------
................................................................................................................................................................................................GAAAAACGAAGAAAAGTTG.......................................191.000.00------------------------1.00---------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCT...........................................................................................2001.001.00----1.00-----------------------------------
......................AGCCATGTGCCATATGATTTATCGGAAGG.......................................................................................................................................................................................................2911.001.00-------1.00--------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGGG........................................................................................2501.001.001.00---------------------------------------
.................................ATATGATTTATCGGA..........................................................................................................................................................................................................1511.001.00---------------------------1.00------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGGGAT......................................................................................2701.001.00---------------------------------1.00------
.........................................................................................................................................AATAGCCACTGCACT..................................................................................................1501.001.00--1.00-------------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCC............................................................................................2001.001.00--1.00-------------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCACGCA...........................................................................................2201.003.00-----------------------------1.00----------
...........................................................................................ATCAGAAGCATTCTGAAGAG...........................................................................................................................................201.000.00----------------------1.00-----------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGG.........................................................................................2401.001.001.00---------------------------------------
.......................................................................................................................................TAAATAGCCACTGCACTCCAG..............................................................................................2101.001.001.00---------------------------------------
...........AGGTTACGAGTAGCCATG.............................................................................................................................................................................................................................1811.001.00--------------------------1.00-------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTGAG........................................................................................2301.006.00------1.00---------------------------------
.......................................................................................................................................TAAATAGCCACTGCACTCC................................................................................................1901.001.00----1.00-----------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGCGAC......................................................................................2701.0016.00-----1.00----------------------------------
......................AGCCATGTGCCATATGATTTATCGGAA.........................................................................................................................................................................................................2711.001.00-------1.00--------------------------------
.........................................................................................................................................AATAGCCACTGCACTCCAGCCTGAGCA......................................................................................2701.0016.00------1.00---------------------------------
.........................................................................ATGTACCTCACCTGAAGC...............................................................................................................................................................1811.001.00------------------------------------1.00---
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGGCGAC.....................................................................................271.000.00-----1.00----------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCT...........................................................................................2101.001.00---1.00------------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCGATA........................................................................................231.000.00------------1.00---------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCGAG.........................................................................................2301.001.00-----1.00----------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTGGAC.......................................................................................2401.003.001.00---------------------------------------
...............................................................................CTCACCTGAAGCATCA...........................................................................................................................................................1640.500.50-------------------------------------0.250.25-
..............................................................................CCTCACCTGAAGCATC............................................................................................................................................................1660.170.17---------------------------------------0.17
................................................................................TCACCTGAAGCATCA...........................................................................................................................................................1580.120.12-------------------------------------0.12--
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGGGTGACAG..................................................................................3090.110.11-0.11--------------------------------------

Antisense strand
GTGCTGGGATGAGGTTACGAGTAGCCATGTGCCATATGATTTATCGGAAGGTAAGTGACATTCAGCATTAAACATGTACCTCACCTGAAGCATCAGAAGCATTCTGAGGAAGTTTTATGTAAATTAAATACTGCATAAATAGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCTAAAAAAAGAAAAACGAAGAAAACTTCTGTAAATAGAATCATTTACACCTTACTAGAGAAGCTTGC
.........................................................................................((.(((((.....)))))((....((((((((..........))))))))...))...)).....................................................................................................
......................................................................................87.......................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189785DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PAZD5SRR189782SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................GTGACATTCAGCATTCG................................................................................................................................................................................... 175.000.00--------1.004.00------------------------------
..........................................................................................................................................................................CAAGACCCTGTCTCTAAAAAAAAT........................................................ 242.000.00-----2.00----------------------------------
............................................................................................................................................................................................AAAAGAAAAACGAAGGGC............................................ 182.000.00---------------------2.00------------------
..........................................................................................................................................CAGGCTGGAGTGCAGTGGCTAT.......................................................................................... 2202.002.002.00---------------------------------------
........................................................................................................................................................................................TAAAAAAAGAAAAACGAAACGG............................................ 221.000.00--------1.00-------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGGGTGACC................................................................................... 291.000.00-1.00--------------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTATTA....................................................................................... 2401.000.00------------1.00---------------------------
........................................................................................................................................................................................TAAAAAAAGAAAAACGACG............................................... 191.000.00--------1.00-------------------------------
.........................................................................................................................................................................GCAAGACCCTGTCTCTAAAAAAAGCCG...................................................... 271.000.00-----1.00----------------------------------
..........................................................................................................................................ATAGCCACTGCACTCCAGCCTGGGTGAACAC................................................................................. 311.000.00-----1.00----------------------------------
.........................................................................................................................................................................................AAAAAAAGAAAAACGAAGAATTGG......................................... 241.000.00-1.00--------------------------------------
...........................................................................................................................................................GCCTGGGTGACAGAGCAAGACCCTGGGAG.................................................................. 291.000.00-----1.00----------------------------------
.................................................................................................................................................CTGCACTCCAGCCTGGGTGACAGAGCAGGGA.......................................................................... 311.000.00-1.00--------------------------------------
.....................TAGCCATGTGCCATATG.................................................................................................................................................................................................................... 171.000.00--------------------1.00-------------------
...........................................................................................................................................................GCCTGGGTGACAGAGCAAGACCCTGTCTGGAC............................................................... 321.000.00-1.00--------------------------------------
..........................................................................................................................................................................................AAAAAAGAAAAACGAGCCT............................................. 191.000.00----------------------1.00-----------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTAACA....................................................................................... 2401.000.00-----1.00----------------------------------
.........................................................................................................................................................................GCAAGACCCTGTCTCTAAAGTAA.......................................................... 231.000.00--------------------1.00-------------------
.............................................................................................................................................................................GACCCTGTCTCTAAAAAAAGTGC...................................................... 231.000.00-----1.00----------------------------------
...........................................................................................................................................TAGCCACTGCACTCCAGCCTAAG........................................................................................ 2301.000.00-1.00--------------------------------------
.................CGAGTAGCCATGTGCCCCT...................................................................................................................................................................................................................... 191.000.00--------------------------------1.00-------
........................................................................................................................................AAATAGCCACTGCACTCCAGGGT........................................................................................... 231.000.00-------1.00--------------------------------