ID: uc001vdq.1_intron_1_0_chr13_50571900_f.5p
GENE: TRIM13(2)
chr13:50571850-50572099+


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CCCTGGGAAATAGTAACCCTGCCAAATACATCAGCTTGTAGGAGACAGAGGTAAACTACAATAATTTTCCTGTGTTATCTTTTTTTTTTAAACACCCAATTTCAATAGGCCCTAGAACCTTCCAAAATGGAACTGTGTGTAGAATACGTATGTTCCCATCCACTTTCATTGGTGGTCTTTGTTCTTTGCATATTTTGTTAAAACTTAGAAAAACAGAATTCACGTTTAGCAATTATTTATGTGGTATTTA
.....................................................................................(((((.(((((((.(((....(((........)))...))).)))....)))).)))))..........................................................................................................
.........................................................................74.......................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR040022(GSM532907)
G575N. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................AAATGGAACTGTGTGCATC...........................................................................................................1916.000.0016.00--------------------------
..............................................................................CTTTTTTTTTTAAACACCAAG.......................................................................................................................................................217.000.00-5.001.00-1.00----------------------
..........................................................................TTATCTTTTTTTTTTAAACACCCAATTTCAATAG..............................................................................................................................................3413.003.00-1.002.00------------------------
...........................................................................TATCTTTTTTTTTTAAACACCCAATTTCAATAG..............................................................................................................................................3313.003.00-1.002.00------------------------
...........................................................................TATCTTTTTTTTTTAAACCAAG.........................................................................................................................................................222.000.00----2.00----------------------
...............................CAGCTTGTAGGAGACAGAGG.......................................................................................................................................................................................................2012.002.00-----2.00---------------------
......................................................................................................................................GTGTGTAGAATACGTATGT.................................................................................................1912.002.00-----------2.00---------------
.............................ATCAGCTTGTAGGAGACAGAGGTA.....................................................................................................................................................................................................2412.002.00--------2.00------------------
..............................................................................................................................ATGGAACTGTGTGTAGAAT.........................................................................................................1912.002.00---------------1.00-----1.00-----
............................................................................................................................AAATGGAACTGTGTGCC.............................................................................................................172.000.00---2.00-----------------------
........................................................................................................................................................................TTGGTGGTCTTTGTTTGT................................................................181.000.00----------1.00----------------
..................................CTTGTAGGAGACAGAGGATG....................................................................................................................................................................................................201.000.00-----------------------1.00---
...............................................................................................................................................................................................ATTTTGTTAAAACTTAAAAT.......................................201.000.00--------------------------1.00
.................................GCTTGTAGGAGACAGAGGA......................................................................................................................................................................................................191.000.00---------1.00-----------------
..........................................................................TTATCTTTTTTTTTTAAACACCCAATTTCAATA...............................................................................................................................................3311.001.00--1.00------------------------
.............................................................................................................................AATGGAACTGTGTGTAGAATACG......................................................................................................2311.001.00------1.00--------------------
............................................................................................................................AAATGGAACTGTGTGCCC............................................................................................................181.000.00---1.00-----------------------
..............................................................................CTTTTTTTTTTAAACACTAAG.......................................................................................................................................................211.000.00-1.00-------------------------
..........................................................................TTATCTTTTTTTTTTATAAG............................................................................................................................................................201.000.00--1.00------------------------
.....GGAAATAGTAACCCTGCCAAAT...............................................................................................................................................................................................................................2211.001.00-------------------------1.00-
..................................................................................................ATTTCAATAGGCCCTAGAACCTTCCAAAA...........................................................................................................................2911.001.00------------------1.00--------
..........................................................................TTATCTTTTTTTTTTAAAGTG...........................................................................................................................................................211.000.00--1.00------------------------
..............................................................AATTTTCCTGTGTTATCTTTTTTTTT..................................................................................................................................................................2611.001.00----------1.00----------------
............................................................................................................................AAATGGAACTGTGTGCCCA...........................................................................................................191.000.00---1.00-----------------------
...................................TTGTAGGAGACAGAGGATG....................................................................................................................................................................................................191.000.00--------------------1.00------
..............................TCAGCTTGTAGGAGACA...........................................................................................................................................................................................................1711.001.00---------1.00-----------------
...........................ACATCAGCTTGTAGGAGACAGA.........................................................................................................................................................................................................2211.001.00-------------1.00-------------
.......................................AGGAGACAGAGGTAAACTACAA.............................................................................................................................................................................................2211.001.00----------------1.00----------
...............................CAGCTTGTAGGAGACAGAGGA......................................................................................................................................................................................................2111.002.00----------------------1.00----
.....................................................................CTGTGTTATCTTTTTTTTGAAG...............................................................................................................................................................221.000.00-1.00-------------------------
............................................................................ATCTTTTTTTTTTAAACACAG.........................................................................................................................................................211.000.00-1.00-------------------------
..............................................................................CTTTTTTTTTTAAACACTTCG.......................................................................................................................................................211.000.00----1.00----------------------
............................CATCAGCTTGTAGGAGACAGAGG.......................................................................................................................................................................................................2311.001.00------------1.00--------------
...........................ACATCAGCTTGTAGGAGA.............................................................................................................................................................................................................1820.500.50-----0.50---------------------
......................................................................................................CAATAGGCCCTAGAACCTT.................................................................................................................................1920.500.50------0.50--------------------
............................................................ATAATTTTCCTGTGTTAT............................................................................................................................................................................1830.330.33-------0.33-------------------

Antisense strand
CCCTGGGAAATAGTAACCCTGCCAAATACATCAGCTTGTAGGAGACAGAGGTAAACTACAATAATTTTCCTGTGTTATCTTTTTTTTTTAAACACCCAATTTCAATAGGCCCTAGAACCTTCCAAAATGGAACTGTGTGTAGAATACGTATGTTCCCATCCACTTTCATTGGTGGTCTTTGTTCTTTGCATATTTTGTTAAAACTTAGAAAAACAGAATTCACGTTTAGCAATTATTTATGTGGTATTTA
.....................................................................................(((((.(((((((.(((....(((........)))...))).)))....)))).)))))..........................................................................................................
.........................................................................74.......................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR040022(GSM532907)
G575N. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................AACACAGGAAAATTATTGTA.............................................................................................................................................................................. 2012.002.00-------2.00-------------------
.............................ATCAGCTTGTAGGAGATTTT......................................................................................................................................................................................................... 201.000.00--------------1.00------------
.................................................................................TTTTTTTTAAACACCCAAA...................................................................................................................................................... 191.000.00-----------------1.00---------
...............................................................................................................................................................................................................AAACGTGAATTCTGTTTTTC....................... 2011.001.00------1.00--------------------
.....................................................................................................................................................................................................................CAGAATTCACGTTTAGGC................... 181.000.00-------------------1.00-------
.........................................................................................................................................AATGAAAGTGGATGGGAACATACGTATTCTACA................................................................................ 3311.001.00------------------------1.00--