ID: uc001uys.1_intron_7_0_chr13_42878000_f.3p
GENE: (8)
chr13:42882390-42882639+


(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN

Sense strand
CCTCAGTTAACTTTGAAATTAATACGCTATCCTACAGTCTGTTTGTTGGCAGACTCAAATAAAGGATTACATGAGCCACTGGTCTGATTCCGAATACCATTTCTTGTTTTTATCATCTTTGTCATCAAATTGATAGTCTTGTAAGTTCAGAATCTGGGATGCTTTCAATTTGATTTTTTTTCTTTTTTTCTTCTTTTTAGTTCAAAAGAAATAGAAGACTTTCAGTCAACCGAGTCTGTCAGTAGCCAGC
...........................................................................................(((......)))....................((((((((((.(((.((.((..((...))..)).)).))).))))))))))............................................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTCCAG...................................................224.000.00--3.001.00------------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTCCAG...................................................233.000.00---2.001.00-----------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTTAAG.................................................272.000.00--2.00-------------------
.............................................................................................ATACCATTTCTTGTTTTTATCATA.....................................................................................................................................242.000.00------2.00---------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTCAAG...................................................252.000.00--1.00-1.00-----------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTTTCT....................................................262.000.002.00---------------------
........................................................................................................................................................................TTTGATTTTTTTTCTTTTTTTGGAC.........................................................252.000.00-2.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTTTTG.................................................272.000.002.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTAAG...................................................262.000.00---2.00------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTTAAG................................................292.000.00--1.00-1.00-----------------
....................................................................................................................................................................................TCTTTTTTTCTTCTTTTTCCAG................................................222.000.00--1.00-1.00-----------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCCCC......................................................232.000.002.00---------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTGGCC....................................................261.000.001.00---------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTCAG........................................................221.000.001.00---------------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTCCAA...................................................231.000.00---1.00------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTGCC.......................................................231.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTTTG.................................................281.000.00--1.00-------------------
...................................................................................................................................................................................TTCTTTTTTTCTTCTTTTGGCT.................................................221.000.00-1.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTGCTG...................................................251.000.00-1.00--------------------
..................................................................................................................................................................................TTTCTTTTTTTCTTCTTTTCTCG.................................................231.000.00---1.00------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTTTAACC................................................271.000.00-1.00--------------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTTTACTG.................................................251.000.00---1.00------------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTGTGG.........................................................241.000.001.00---------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTGGG.......................................................231.000.00-1.00--------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTCCAG.......................................................231.000.00--1.00-------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTAACG.................................................241.000.001.00---------------------
........................................................................................................................................................................TTTGATTTTTTTTCTTTTTTTTCCC.........................................................251.000.001.00---------------------
..............................................................................................................................................................................................................................CAGTCAACCGAGTCTGTCAGTAGCC...2511.001.00-------------------1.00--
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTTACC..................................................251.000.00-1.00--------------------
....................................................................................................................................................................................TCTTTTTTTCTTCTTTTGAGC.................................................211.000.00-1.00--------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTTTACAAG...............................................281.000.00----1.00-----------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTTTTCAG..................................................281.000.00--1.00-------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCCTCC.....................................................251.000.001.00---------------------
..................................................................................................................................................................................TTTCTTTTTTTCTTCTTTTTAGACGG..............................................2611.001.00-1.00--------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTTCTT................................................291.000.00----1.00-----------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTGGC..................................................271.000.001.00---------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTTTTCTC................................................271.000.001.00---------------------
..................................................................................................................................................................................TTTCTTTTTTTCTTCTTTTTAG..................................................2211.001.00--1.00-------------------
..........................................................................................................................................................................TGATTTTTTTTCTTTTTTTTGCC.........................................................231.000.00----1.00-----------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTCGG.....................................................241.000.001.00---------------------
....................................................................................................................................................................................TCTTTTTTTCTTCTTTTTCCG.................................................211.000.00--1.00-------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTCTTC.................................................281.000.00----1.00-----------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCAAG......................................................241.000.00----1.00-----------------
....................................................................................................................................................................................TCTTTTTTTCTTCTTTTCG...................................................191.000.00--1.00-------------------
..........................................................................................................TTTTTATCATCTTTGTTTGT............................................................................................................................201.000.001.00---------------------
.......................................................................................................................................................................ATTTGATTTTTTTTCTTTTTTTCTTCTAGA.....................................................301.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTGGCC..................................................271.000.00-1.00--------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCAT.......................................................221.000.00--1.00-------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCGCAG........................................................211.000.001.00---------------------
.................................................................................................................................................................CTTTCAATTTGATTTTTTCAGA...................................................................221.000.00--------------------1.00-
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTCAGGC........................................................251.000.00-1.00--------------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTTTGG.........................................................241.000.001.00---------------------
............................................................................................................................................................................................................AAAGAAATAGAAGACTTTCA..........................2011.001.00---------------1.00------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCGGTC........................................................201.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCGGTT........................................................211.000.00-1.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTCAG...................................................251.000.001.00---------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTCC.....................................................231.000.001.00---------------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTACC..........................................................231.000.00-1.00--------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCCACG.....................................................251.000.00--1.00-------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTGCAG.................................................281.000.001.00---------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTTATG.................................................271.000.00----1.00-----------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTAAG..................................................271.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCGTC.........................................................201.000.001.00---------------------
................................................................................................................................ATTGATAGTCTTGTAGT.........................................................................................................171.000.00--------------1.00-------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTATTG.................................................271.000.00----1.00-----------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCGGT.........................................................211.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCGCTG.....................................................241.000.00-1.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTTTAAG................................................281.000.00---1.00------------------
....................................................................................................................................................................................TCTTTTTTTCTTCTTTTCCAG.................................................211.000.00---1.00------------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTTGG..........................................................231.000.00-1.00--------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTGGCT.......................................................231.000.00-1.00--------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCAGAG.....................................................241.000.001.00---------------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTCATG....................................................221.000.00--1.00-------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTGGTG....................................................251.000.001.00---------------------
...............................................................................................................................AATTGATAGTCTTGTAGT.........................................................................................................181.000.00------------------1.00---
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTCAAG....................................................251.000.00-1.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTAG....................................................241.000.001.00---------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTTTAGCC..................................................281.000.001.00---------------------
........................................................................................................................................................................................TTTTTCTTCTTTTTAGTTCATC............................................221.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTAATG..................................................271.000.00---1.00------------------
..........................................................................................................................................................................TGATTTTTTTTCTTTTTTTGGTA.........................................................231.000.00-1.00--------------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTCACG.............................................................201.000.00-----------1.00----------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTGCAG....................................................251.000.00-1.00--------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTAG....................................................231.000.001.00---------------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTTTGGAG.................................................251.000.001.00---------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTGGTC..................................................251.000.00-1.00--------------------
.......................................................................................................................................................................ATTTGATTTTTTTTCTAGAG...............................................................201.000.00-1.00--------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTAGC..................................................271.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTCAG...................................................261.000.00--1.00-------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTTAATAG...............................................291.000.00--1.00-------------------
.......................................................................................................................................................................................................................................GAGTCTGTCAGTAGCCAGCAGCT231.000.00-----------------1.00----
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTGGTT..................................................261.000.00-1.00--------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCGCAT........................................................201.000.001.00---------------------
......................................................................................................................................................................AATTTGATTTTTTTTCTTTTGAG.............................................................231.000.00-1.00--------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTAT..................................................271.000.00---1.00------------------
..........................................................................................................................................................................TGATTTTTTTTCTTTTTTGGGT..........................................................221.000.00-1.00--------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTAAG..................................................231.000.00--1.00-------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTTAGTAGTG.............................................281.000.001.00---------------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTCTG....................................................241.000.00--1.00-------------------
..................................................................................................................................................................................TTTCTTTTTTTCTTCTTTCGTG..................................................221.000.001.00---------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTGGTG......................................................241.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTTG..................................................271.000.00----1.00-----------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTCGAG.................................................241.000.001.00---------------------
...............................................................................................................................................................................TTTTTTCTTTTTTTCTTCTTTTTGGTC................................................271.000.001.00---------------------
...................................................................................................................................................................................TTCTTTTTTTCTTCTTTTTAGACGG..............................................251.000.00-1.00--------------------
........................................................................................................................................................................TTTGATTTTTTTTCTTTTTTTGGTC.........................................................251.000.00----1.00-----------------
.........................................................................................................................................................................TTGATTTTTTTTCTTTTTTTTCTC.........................................................241.000.00--1.00-------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTTTGGTG..................................................281.000.001.00---------------------
........................................................................................................................................................................TTTGATTTTTTTTCTTTTTTGGGA..........................................................241.000.00-1.00--------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTTTTTCTG.................................................291.000.00---1.00------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTAAAG....................................................211.000.00----1.00-----------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTGGT....................................................221.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTAGGC.................................................281.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTCG...................................................261.000.00-1.00--------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTTCTTG................................................251.000.00---1.00------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTCC...................................................261.000.00-1.00--------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTGGTT.................................................241.000.001.00---------------------
...............................................................................................................................AATTGATAGTCTTGTAACC........................................................................................................191.000.00-------1.00--------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTACAG...................................................221.000.00-1.00--------------------
...................................................................................................................................................................................TTCTTTTTTTCTTCTTTTCCAG.................................................221.000.00---1.00------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCAGGG.....................................................241.000.00-1.00--------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTCG....................................................211.000.00--1.00-------------------
.............................TCCTACAGTCTGTTTGTG...........................................................................................................................................................................................................181.000.00------------1.00---------
...................................................................................................................................................................................TTCTTTTTTTCTTCTTTTGAGT.................................................221.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTAAAG.................................................281.000.00--1.00-------------------
............................................................................................................................................................................ATTTTTTTTCTTTTTTTCTTCTGTTG....................................................261.000.001.00---------------------
.............................................................................................................................................................................TTTTTTTTCTTTTTTTCTTCTTTTTTTAG................................................291.000.00--1.00-------------------
.................................................................................................................................................................................TTTTCTTTTTTTCTTCTTTTTCAT.................................................241.000.00----1.00-----------------
................................................................................................................................................................................TTTTTCTTTTTTTCTTCTTACAC...................................................231.000.00---1.00------------------
.....................................................................................................................................................................................CTTTTTTTCTTCTTTTTAG..................................................1930.670.67---0.67------------------

Antisense strand
CCTCAGTTAACTTTGAAATTAATACGCTATCCTACAGTCTGTTTGTTGGCAGACTCAAATAAAGGATTACATGAGCCACTGGTCTGATTCCGAATACCATTTCTTGTTTTTATCATCTTTGTCATCAAATTGATAGTCTTGTAAGTTCAGAATCTGGGATGCTTTCAATTTGATTTTTTTTCTTTTTTTCTTCTTTTTAGTTCAAAAGAAATAGAAGACTTTCAGTCAACCGAGTCTGTCAGTAGCCAGC
...........................................................................................(((......)))....................((((((((((.(((.((.((..((...))..)).)).))).))))))))))............................................................................
........................................................................................89.............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTGA................................................... 252.000.00-----2.00----------------
..............................................................................................................................................................................TTTTTTTCTTTTTTTCTTCTTTTGAAA................................................. 271.000.00--------1.00-------------
...........................................................................................................................................................................................................................TTTCAGTCAACCGAGTTGG............ 191.000.00---------------------1.00
.......................................................................................................................................................................ATTTGATTTTTTTTCTTTTGTT............................................................. 221.000.00----------------1.00-----
......................................................................................................................................................................................................AGTTCAAAAGAAATAGCTG................................. 191.000.00---------1.00------------
............................................GTTGGCAGACTCAAATCCAC.......................................................................................................................................................................................... 201.000.00----------1.00-----------
.........................................................................GTATTCGGAATCAGACCAGTGGCT......................................................................................................................................................... 2411.001.00-------------1.00--------