ID: uc001tsu.1_intron_0_0_chr12_112277808_r
GENE: C12orf47(2)
chr12:112277758-112278186-


(5)
B-CELL 		(4)
BRAIN 		(14)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
HELA 		(7)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTGAGCCACCGTGCCTGGCTGAGAAGATGGATTTAAGACATATTTTGGAGGTAACATTGTCAGGACTTCCTGAAGGATTAGATGTGGAAGGGAAGGATAAGAAACAGACCAAGGATAACTTTCAAATGTATGCTTAAGCAACTGGATGGATAATGATGCCATTGAGTGAGTGAAAAACTTGATGGAAGTGGAAGATTCAGAGTTCATTTCTATCTAGGTTAATTTGAGACATACCAGAGCATAAGTTAAGTAAGTAATTGAATATTGGAGTGGAGACTTATTTGTCTACCGAATTATTGTTTTCTTTGTCGGACATACACCTACACTGCATTCCTCAAAGTAAAATTTAAGTGTGGCTCTGTGCCTATGCTCTCCCCAGCGGAAAGTGACCAGAAGAGGTGTGCAGTTTCCAGGCCTGGCCCATACAGA
.............................................................................................................................................................................................................................................................(((...(((((.(((..(((((((......)))).)))..))).)))))(((.....)))..)))...............................................................................................................
..........................................................................................................................................................................................................................................................251.....................................................................323........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...............................................................................................................................................................................................................................................................AATTGAATATTGGAGTGG............................................................................................................................................................18115.0015.0015.00---------------------------------------------------
.......................................ATATTTTGGAGGTAACATTGTCAGGACTTCCTGAAGGATTAGATGTGGAAGGGAAGGATAAGAAA.....................................................................................................................................................................................................................................................................................................................................6519.009.00--9.00-------------------------------------------------
................................................................................................................................................................................................................................................................ATTGAATATTGGAGTGGA...........................................................................................................................................................1815.005.00----5.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................TTGTTTTCTTTGTCGGACATACA..............................................................................................................2315.005.00-5.00--------------------------------------------------
..............CTGGCTGAGAAGATGGATTT...........................................................................................................................................................................................................................................................................................................................................................................................................2015.005.00------------1.002.001.00----------1.00--------------------------
.................................................................................ATGTGGAAGGGAAGGATAA.........................................................................................................................................................................................................................................................................................................................................1913.003.00--------3.00-------------------------------------------
................................................................ACTTCCTGAAGGATTAGATGTGG......................................................................................................................................................................................................................................................................................................................................................2313.003.00---2.001.00-----------------------------------------------
..........................................................................GGATTAGATGTGGAAGGGAAGGATAAG........................................................................................................................................................................................................................................................................................................................................2712.002.00-2.00--------------------------------------------------
.TGAGCCACCGTGCCTGGCTGACACC...................................................................................................................................................................................................................................................................................................................................................................................................................252.000.00-----2.00----------------------------------------------
........CCGTGCCTGGCTGAGAAGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00------------------2.00---------------------------------
.......................................................................................................................................................................................................GAGTTCATTTCTATCTAGGTT.................................................................................................................................................................................................................2112.002.00----2.00-----------------------------------------------
...........................................................................................GAAGGATAAGAAACAGACCAAGGATAACT.....................................................................................................................................................................................................................................................................................................................2912.002.00----------------2.00-----------------------------------
.....CCACCGTGCCTGGCTGAGAAGATGGATTTA..........................................................................................................................................................................................................................................................................................................................................................................................................3012.002.00-----2.00----------------------------------------------
..........GTGCCTGGCTGAGAAGATGGATTT...........................................................................................................................................................................................................................................................................................................................................................................................................2412.002.00---------------------1.00-------1.00----------------------
................................................................................GATGTGGAAGGGAAGGATAAG........................................................................................................................................................................................................................................................................................................................................2112.002.00---2.00------------------------------------------------
........................................................................................................................................................................................................................................................................................................................ACATACACCTACACTGCATTCCTCAAAG.........................................................................................2812.002.00-------2.00--------------------------------------------
.....................................ACATATTTTGGAGGTAACATTG..................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----------2.00----------------------------------------
..............CTGGCTGAGAAGATGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................1822.002.00---0.50-----------1.00----------------------------------0.50-
............GCCTGGCTGAGAAGATGGATTTAAGACATATTT................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00------1.00---------------------------------------------
...............................................................................................................................................................................................................................................................AATTGAATATTGGAGCGG............................................................................................................................................................181.000.001.00---------------------------------------------------
................GGCTGAGAAGATGGATTTT..........................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00---------
........................................................................................................................................................................................................................................................................................................................................................................................CAGCGGAAAGTGACCAGAAGAGGTG............................2511.001.00--------------------------------1.00-------------------
..............CTGGCTGAGAAGATGGAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------1.00---------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAAGAGGTGTGAGT.......................181.000.00-------------------------------------------1.00--------
.....................AGAAGATGGATTTAAGATA.....................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------
...AGCCACCGTGCCTGGCTGAGCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00----------------------------------1.00-----------------
........................................................................................................................................................................AGTGAAAAACTTGATGGAAGTGGAAG...........................................................................................................................................................................................................................................2611.001.00--------------------------------------1.00-------------
....................................................................................................................................................................................................................................................................AATATTGGAGTGGAGACTTATT...................................................................................................................................................2211.001.00------------------------------1.00---------------------
...............................................................................................................................................................................................................................................................................................................CTTTGTCGGACATACACCTACA........................................................................................................2211.001.00-------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAAGTGACCAGAAGAG...............................2111.001.00----------1.00-----------------------------------------
........CCGTGCCTGGCTGAGAAGATGGA..............................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------1.00-----------
.......................................................................................................ACAGACCAAGGATAACTT....................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------1.00-----------------------
...................................................................................................................................................................................................................................................................................................AATTATTGTTTTCTTTGTCGGACATA................................................................................................................2611.001.00------------------------------------1.00---------------
........................AGATGGATTTAAGACATATTTT...............................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------1.00----------------------------------
........................................................................................................................................................................AGTGAAAAACTTGATGGAAGTGGA.............................................................................................................................................................................................................................................2411.001.00--------------------------------------------1.00-------
.......................................................................................................................................................................................................................................TACCAGAGCATAAGTAATT...................................................................................................................................................................................191.000.00-------1.00--------------------------------------------
............................................................................ATTAGATGTGGAAGGGAAGGATAAGA.......................................................................................................................................................................................................................................................................................................................................2611.001.00--------------1.00-------------------------------------
.........................................................................AGGATTAGATGTGGAAGGGA................................................................................................................................................................................................................................................................................................................................................2011.001.00---1.00------------------------------------------------
....................................................................................................................................................................................GATGGAAGTGGAAGATTCAGA....................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00--------------
.............................................................................TTAGATGTGGAAGGGAAGGATAAGT.......................................................................................................................................................................................................................................................................................................................................251.000.00---1.00------------------------------------------------
.............CCTGGCTGAGAAGATGGATTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------------------1.00-----
..............CTGGCTGAGAAGATGGATTTAA.........................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------1.00------------------
..........GTGCCTGGCTGAGAAGATGGATTTAAGAC......................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00--------------------1.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................................TAAAATTTAAGTGTGGCTCTGT...................................................................2211.001.00-------------------------------------------------1.00--
..................................................................TTCCTGAAGGATTAGCAC.........................................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00----------------------------------------------
..........................................................................................................................................................................................................................................................................................................GTTTTCTTTGTCGGACATACAC.............................................................................................................2211.001.00---------------1.00------------------------------------
......................................................................TGAAGGATTAGATGTGGAAGGGA................................................................................................................................................................................................................................................................................................................................................2311.001.00-----------------------1.00----------------------------
...................TGAGAAGATGGATTTAAGACA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------1.00---
......................................................................TGAAGGATTAGATGTGGAAGGGAAGGATAA.........................................................................................................................................................................................................................................................................................................................................3011.001.00------1.00---------------------------------------------
...AGCCACCGTGCCTGGCTGAGAAGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------1.00-------------------------
..........GTGCCTGGCTGAGAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAAGTGACCAGAAGAGGTGTGCAGTT.....................3111.001.00----------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGTGTGCAGTTTCCAGGCCTGGC.........2711.001.00---------------------------------------------1.00------
.....................................................................................................................................TTAAGCAACTGGATGGATAATGA.................................................................................................................................................................................................................................................................................2311.001.00-1.00--------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAAGTGACCAGAAGAGGTGTGCAGTTTC...................3311.001.00------1.00---------------------------------------------
................................................AGGTAACATTGTCAGGACTTCC.......................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------1.00-------------------------------------------
............................................................................................................................................................................................................CATTTCTATCTAGGTTAATTTGAGA........................................................................................................................................................................................................2511.001.00---1.00------------------------------------------------
................GGCTGAGAAGATGGATTTAAGACA.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------1.00------------
.............CCTGGCTGAGAAGATGGATTTAAGACA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00-----------------1.00----------------------------------
...........................................................................................................................................AACTGGATGGATAATGATGC..............................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------1.00----
...................................................................TCCTGAAGGATTAGATGTGGAAGGGAAGG.............................................................................................................................................................................................................................................................................................................................................2911.001.00---------------------------1.00------------------------
.....................................................................................................AAACAGACCAAGGATAACA.....................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00---------------------------
......................................................................................................................................................................................................................................ATACCAGAGCATAAGTTAAG...................................................................................................................................................................................2011.001.00-------1.00--------------------------------------------
..................................................................................................................................................................................TTGATGGAAGTGGAAGAT.........................................................................................................................................................................................................................................1820.500.50---0.50------------------------------------------------
..................................................................................................................................TGCTTAAGCAACTGGATGGAT......................................................................................................................................................................................................................................................................................2120.500.50---------------------------------------------------0.50

Antisense strand
GTGAGCCACCGTGCCTGGCTGAGAAGATGGATTTAAGACATATTTTGGAGGTAACATTGTCAGGACTTCCTGAAGGATTAGATGTGGAAGGGAAGGATAAGAAACAGACCAAGGATAACTTTCAAATGTATGCTTAAGCAACTGGATGGATAATGATGCCATTGAGTGAGTGAAAAACTTGATGGAAGTGGAAGATTCAGAGTTCATTTCTATCTAGGTTAATTTGAGACATACCAGAGCATAAGTTAAGTAAGTAATTGAATATTGGAGTGGAGACTTATTTGTCTACCGAATTATTGTTTTCTTTGTCGGACATACACCTACACTGCATTCCTCAAAGTAAAATTTAAGTGTGGCTCTGTGCCTATGCTCTCCCCAGCGGAAAGTGACCAGAAGAGGTGTGCAGTTTCCAGGCCTGGCCCATACAGA
.............................................................................................................................................................................................................................................................(((...(((((.(((..(((((((......)))).)))..))).)))))(((.....)))..)))...............................................................................................................
..........................................................................................................................................................................................................................................................251.....................................................................323........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
.....................................................................................................................................................................................................GATAGAAATGAACTCTG....................................................................................................................................................................................................................... 1714.004.00---------4.00------------------------------------------
.....................................................................................................................................................................................................AGATAGAAATGAACTCTG...................................................................................................................................................................................................................... 1812.002.00----------------------1.00------------------1.00----------
.......................................................................................AAGGGAAGGATAAGAGTCT................................................................................................................................................................................................................................................................................................................................... 191.000.00------1.00---------------------------------------------
.........................................................................................................................................................................................................................................................GTAAGTAATTGAATAC.................................................................................................................................................................... 161.000.00-------------------1.00--------------------------------