ID: uc001tep.1_intron_9_0_chr12_96691500_r.3p
GENE: (7)
chr12:96691450-96691699-


(3)
B-CELL
(1)
BREAST
(7)
CELL-LINE
(7)
HEART
(1)
HELA
(1)
KIDNEY
(1)
OTHER
(28)
SKIN

Sense strand
GTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCGCCTGCCTCGGTCTCTCAAAAGTGCTGGGATTATAGGGGTGAGCCACCGCCCAAGACCTAAACTTAAGAGAATCTTTTAATCAGTTCGTATGTTCAACTTACTTCAGGTTTTTATAAAGACTGCCACAGACTAAACAATTTTCTTTTTCTGTTTTGCAGTTTCACTATTAAAGGATTTAAAACATGCAAATATAGTAACCTTACATGAC
.............................................................................(((((......)))))...........(((((((...))))))).................................................................................................................................
.........................................................................74...................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
.......................................................................................................CTTAAGAGAATCTTTTAATC...............................................................................................................................2018.008.00---1.00-2.00----------1.001.001.001.00---------------------------1.00---
...................................................................................................TAAACTTAAGAGAATCTTTTAATC...............................................................................................................................2416.006.00---1.00-----1.00---1.001.00-------1.00----1.00-----------------------
................................................................................................ACCTAAACTTAAGAGAATCTTTTAATC...............................................................................................................................2715.005.00------------1.001.001.00----------------------------1.00-1.00-----
..............................................................................GGTGAGCCACCGCCCGTCC.........................................................................................................................................................194.000.00----1.00------------------1.00-------1.00-----1.00-------------
........................................................................................................TTAAGAGAATCTTTTAATC...............................................................................................................................1914.004.00----1.00------1.00-------------1.00---------1.00---------------
..........................................................................................................AAGAGAATCTTTTAATC...............................................................................................................................1714.004.00-------1.00-1.00------1.00---------------------1.00------------
.........................................................................................................TAAGAGAATCTTTTAATC...............................................................................................................................1813.003.00------1.00----1.00---1.00-----------------------------------
....................................................................................................AAACTTAAGAGAATCTTTTAATC...............................................................................................................................2313.003.00---2.00----------------------------------------1.00------
.................TGAACTCCTGGGCTCAAGTGATCCCGCC.............................................................................................................................................................................................................282.000.00--2.00------------------------------------------------
..............................................................................GGTGAGCCACCGCCCGTC..........................................................................................................................................................182.000.00-----1.00------------------------------1.00--------------
.................................................................................................CCTAAACTTAAGAGAATCTTTTAATC...............................................................................................................................2612.002.00---------------------1.00------------------------1.00----
.....................................................................................................AACTTAAGAGAATCTTTTAATC...............................................................................................................................2212.002.00-------1.00-------------------------------1.00-----------
..................................................................................................................................................AGGTTTTTATAAAGACTGCCACAGACT.............................................................................2711.001.00--1.00------------------------------------------------
...........................................................................................................................................................................CTAAACAATTTTCTTTTTGCC..........................................................211.000.00-1.00-------------------------------------------------
..................................................................................................................................................................................ATTTTCTTTTTCTGTTAGA.....................................................191.000.00--1.00------------------------------------------------
...................................................................................................................................................................................................................................CAAATATAGTAACCTTAC.....1811.001.00-----------------------------------------1.00---------
.................................................................CTGGGATTATAGGGGTGAAAAT...................................................................................................................................................................221.000.00---------------------------------1.00-----------------
....................................................................................................................................................................................................................AGGATTTAAAACATGCAAATATAGTAACC.........2911.001.00------------------------------------------1.00--------
....................................................................................................................................................................................................................AGGATTTAAAACATGCAAAT..................2011.001.00----------------------------------1.00----------------
....................................................................................................................................................................................................................AGGATTTAAAACATGCA.....................1711.001.00-----------------------------1.00---------------------
....................................................................................................................................................................................................................AGGATTTAAAACATGCAAA...................1911.001.00------------------------------------------------1.00--
............GGTCTTGAACTCCTGGGCTCACGTT.....................................................................................................................................................................................................................251.000.00----------1.00----------------------------------------
..................................................................................................................................................................................ATTTTCTTTTTCTGTTTTGCAG..................................................2211.001.00--------1.00------------------------------------------
...................AACTCCTGGGCTCAAGTGATCCGCCTCCTC.........................................................................................................................................................................................................301.000.00--1.00------------------------------------------------
...............................................................................GTGAGCCACCGCCCAAGACCTAAACTTAAGAGA..........................................................................................................................................3311.001.00------------1.00--------------------------------------
.........................................................................................................................................................................................................................TTAAAACATGCAAATATTCAG............211.000.00-1.00-------------------------------------------------
.....................CTCCTGGGCTCAAGTGATCCGC...............................................................................................................................................................................................................2201.001.00--------1.00------------------------------------------
......................................................................................................................................................TTTTATAAAGACTGCCACAGACTAAA..........................................................................2611.001.00--------------------------------1.00------------------
.........................TGGGCTCAAGTGATCCGCCTTA...........................................................................................................................................................................................................221.000.00------------------------1.00--------------------------
.......................................................................................................................................................................................................GTTTCACTATTAAAGGATTTAAGAGA.........................261.000.00-------------------------------------------------1.00-
.......................................................................................................................................................................................................................................TATAGTAACCTTACATG..1711.001.00-1.00-------------------------------------------------
..........CTGGTCTTGAACTCCTGGGCTCACGTT.....................................................................................................................................................................................................................271.000.00----------1.00----------------------------------------
.......................................................................................................................................................................CAGACTAAACAATTTTCTTTTTCTGT.........................................................2611.001.00----------------------------1.00----------------------
...............................................................................................................................................................................................................ATTAAAGGATTTAAATGC.........................181.000.00----1.00----------------------------------------------
...........................................................................................................................................................................................................CACTATTAAAGGATTTAAAACATG.......................2411.001.00----------------------------------------1.00----------
.................................................................................................................................................................................................................TAAAGGATTTAAAACATGCAAATATAGTAACC.........3211.001.00--------------------------1.00------------------------
...............................................................................................................................................................................................................ATTAAAGGATTTAAAACATGCAA....................2311.001.00------1.00--------------------------------------------
......................................................................................................ACTTAAGAGAATCTTTTAATC...............................................................................................................................2111.001.00--------------------1.00------------------------------
....................ACTCCTGGGCTCAAGTGATCCGCCACC...........................................................................................................................................................................................................271.000.00--1.00------------------------------------------------

Antisense strand
GTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCGCCTGCCTCGGTCTCTCAAAAGTGCTGGGATTATAGGGGTGAGCCACCGCCCAAGACCTAAACTTAAGAGAATCTTTTAATCAGTTCGTATGTTCAACTTACTTCAGGTTTTTATAAAGACTGCCACAGACTAAACAATTTTCTTTTTCTGTTTTGCAGTTTCACTATTAAAGGATTTAAAACATGCAAATATAGTAACCTTACATGAC
.............................................................................(((((......)))))...........(((((((...))))))).................................................................................................................................
.........................................................................74...................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM359174(GSM359174)
hela_5_1. (hela)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
........GGCTGGTCTTGAACTCCTGGGCTCAAGTGGAC.................................................................................................................................................................................................................. 323.000.003.00--------------------------------------------------
....................ACTCCTGGGCTCAAGTGATCCGCCTGCCTCCG...................................................................................................................................................................................................... 323.000.003.00--------------------------------------------------
....................ACTCCTGGGCTCAAGTGATCCGCCTAGG.......................................................................................................................................................................................................... 281.000.001.00--------------------------------------------------
......................GCGGATCACTTGAGCCCAGGA............................................................................................................................................................................................................... 2101.001.00------------------------------1.00--------------------
..........................................................AAAAGTGCTGGGATTATAGGTTCT........................................................................................................................................................................ 241.000.00-1.00-------------------------------------------------
..........................................................AAAAGTGCTGGGATTATAGGTTA......................................................................................................................................................................... 231.000.00-1.00-------------------------------------------------
....................................................................................................................................GTTCAACTTACTTCATCTG................................................................................................... 191.000.00---------------1.00-----------------------------------
......................................TCCGCCTGCCTCGGTCTCTCC............................................................................................................................................................................................... 211.000.001.00--------------------------------------------------
.....................ACCGAGGCAGGCGGATCACTTGAGCCCAGGAG..................................................................................................................................................................................................... 3211.001.001.00--------------------------------------------------
...................................................................GGGATTATAGGGGTGAGCGC................................................................................................................................................................... 201.000.00-1.00-------------------------------------------------
..........................................................AAAAGTGCTGGGATTATAGGTTAT........................................................................................................................................................................ 241.000.00-1.00-------------------------------------------------
..........................................................................................................................................................................................GAAACTGCAAAACAGAAA.............................................. 1840.250.25--------------------------------------------------0.25
..................................TGAGAGACCGAGGCAGGCGGATCAC............................................................................................................................................................................................... 2560.170.17--0.17------------------------------------------------
..................................TTTGAGAGACCGAGGCAGGCGGATCAC............................................................................................................................................................................................. 2760.170.170.17--------------------------------------------------