ID: uc001tcs.2_intron_0_0_chr12_93861331_f.5p
GENE: (1)
chr12:93861281-93861530+


(13)
B-CELL 		(8)
BRAIN 		(13)
BREAST 		(30)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(5)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(28)
SKIN 		(1)
XRN.ip

Sense strand
GGGACCAGGATTGAAACAAGATGGCGGGTTCGTGGTGAGAAGCCGTCAAGGTAACCGCTTCCCTCTACTCCTCCTGTCGAGGACTTCCTCGAAACTGGGCAGTCCCACAGTGTTGGTCGGCAGTTGTAGAGGTCTCCCGCCTGTCGTTCCCGGCAGGGCGAGGTTGCCTGCATCCCCAGCCTTTGTCCTTCCTGCAGAAGAGCCGGCATGTGGCTGCGCGTTTCTTATAGCGCCCCCTTTGTTCCCTGGC
............................................................................((((((....)))))).....((.((.((.((((((((....)))).))))...)).)))).................................................................................................................
..........................................................................75............................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.........................GGGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................20120.0020.006.002.009.00-----1.00-------------------1.00--------------------1.00----------------------------------------------------------------
.........ATTGAAACAAGATGGCGGGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................36118.0018.00---------4.00--4.00-3.00---3.00-3.00---------1.00-----------------------------------------------------------------------------------
.......................GCGGGTTCGTGGTGAGAAGC...............................................................................................................................................................................................................20116.0016.005.00--1.00------2.00------------------------1.001.00--------1.00-1.00------------------------------------1.00--------1.00---------1.00----1.00-----
.........................GGGTTCGTGGTGAGAAGC...............................................................................................................................................................................................................18112.0012.003.00----------------3.00-2.00--------1.00------------------------1.00----1.00-----------------------------1.00-------------------------
........................CGGGTTCGTGGTGAGAAG................................................................................................................................................................................................................18111.0011.00--10.00------------------------------------------1.00--------------------------------------------------------------------
............................TTCGTGGTGAGAAGC...............................................................................................................................................................................................................15110.0010.00---9.001.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGGT.....................................................................................................................1818.008.00-1.001.00--------2.00---------2.00-1.00-------------------------------------------------------------------------1.00----------------
......AGGATTGAAACAAGATGG..................................................................................................................................................................................................................................1817.007.00-2.00-----------1.00--1.00-----------------------------1.00---------1.00----------------------------------------------------1.00----
...........................GTTCGTGGTGAGAAGC...............................................................................................................................................................................................................1616.006.00---3.002.00------1.00------------------------------------------------------------------------------------------------------
...........TGAAACAAGATGGCGGGTTCGT.........................................................................................................................................................................................................................2215.005.00-5.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................GCAGTTGTAGAGGTCTCCC................................................................................................................1915.005.001.001.00----1.00--------1.00-----------1.00--------------------------------------------------------------------------------------
.........ATTGAAACAAGATGGCGGGTTCGTGG.......................................................................................................................................................................................................................2615.005.00-------3.00--------------------------------------------------------1.00-1.00-----------------------------------------------
.....CAGGATTGAAACAAGATGGCA................................................................................................................................................................................................................................2114.003.00----------------------2.00----------------2.00--------------------------------------------------------------------------
...ACCAGGATTGAAACAAGATGG..................................................................................................................................................................................................................................2114.004.00-------------3.00-----------1.00----------------------------------------------------------------------------------------
..........................................................................................................................GTTGTAGAGGTCTCCCGC..............................................................................................................1814.004.001.00--1.00-2.00------------------------------------------------------------------------------------------------------------
...ACCAGGATTGAAACAAGATGGCG................................................................................................................................................................................................................................2314.004.004.00-----------------------------------------------------------------------------------------------------------------
.GGACCAGGATTGAAACAAGA.....................................................................................................................................................................................................................................2013.003.003.00-----------------------------------------------------------------------------------------------------------------
............GAAACAAGATGGCGGGTTCGTGGTGA....................................................................................................................................................................................................................2613.003.00-------3.00----------------------------------------------------------------------------------------------------------
............................................................................................................AGTGTTGGTCGGCAGTTGTA..........................................................................................................................2013.003.00-3.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................................AGTTGTAGAGGTCTCCCGC..............................................................................................................1913.003.00-3.00----------------------------------------------------------------------------------------------------------------
.....................................................................................................................CGGCAGTTGTAGAGGTCTCCC................................................................................................................2113.003.002.00-------------------------------------------------------------------------------------------1.00---------------------
..........................................................................................................................GTTGTAGAGGTCTCCCGCC.............................................................................................................1913.003.003.00-----------------------------------------------------------------------------------------------------------------
.....CAGGATTGAAACAAGATGGC.................................................................................................................................................................................................................................2013.003.00----1.00-------------------------------------------------------1.00----------1.00------------------------------------------
........................CGGGTTCGTGGTGAGAAGCC..............................................................................................................................................................................................................2013.003.00----------1.00------------1.00--------------1.00---------------------------------------------------------------------------
.....CAGGATTGAAACAAGATGG..................................................................................................................................................................................................................................1913.003.001.00--------------------------------------------------------1.00-------------------------------1.00------------------------
..................AGATGGCGGGTTCGTGG.......................................................................................................................................................................................................................1712.002.00------------------------------------------2.00-----------------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGGG.....................................................................................................................1812.001.00--2.00---------------------------------------------------------------------------------------------------------------
.....CAGGATTGAAACAAGATGGCGGGT.............................................................................................................................................................................................................................2412.002.002.00-----------------------------------------------------------------------------------------------------------------
.........................................GCCGTCAAGGTAACCGC................................................................................................................................................................................................1712.002.00----2.00-------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGAGCCGGCATGTGGCTGCGCGTTTC..........................2612.002.00-------------------------------------2.00----------------------------------------------------------------------------
......AGGATTGAAACAAGATGGCG................................................................................................................................................................................................................................2012.002.00--------------------------------1.001.00--------------------------------------------------------------------------------
............GAAACAAGATGGCGGGTTCGTGGTGAGAAGCCGTCA..........................................................................................................................................................................................................3612.002.00------------1.00-----------------1.00-----------------------------------------------------------------------------------
.......................................AAGCCGTCAAGGTAACCGCTTC.............................................................................................................................................................................................2212.002.00---------------------1.00--------------------------------------------------1.00-----------------------------------------
.......................................AAGCCGTCAAGGTAACCG.................................................................................................................................................................................................1812.002.00----------------------------------------1.00---------------------1.00---------------------------------------------------
...........................................................................................................CAGTGTTGGTCGGCAGTT.............................................................................................................................1812.002.00----------------------------------2.00-------------------------------------------------------------------------------
........................CGGGTTCGTGGTGAGAAGC...............................................................................................................................................................................................................1912.002.00-------------------1.00-----------------------------------------------1.00----------------------------------------------
............................TTCGTGGTGAGAAGCCGTCAAGG.......................................................................................................................................................................................................2312.002.00---2.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGGTCTCCCG...............................................................................................................2412.002.00---------------------------------1.00----1.00---------------------------------------------------------------------------
................................................................................................................TTGGTCGGCAGTTGTAGAGGTCTCC.................................................................................................................2512.002.00---------------2.00--------------------------------------------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGGTCTC..................................................................................................................2112.002.00-----1.00-----------------------------------1.00------------------------------------------------------------------------
...............................................................................................................GTTGGTCGGCAGTTGTAGAG.......................................................................................................................2012.002.00-1.00------1.00---------------------------------------------------------------------------------------------------------
...............................................................................AGGACTTCCTCGAAACTGGG.......................................................................................................................................................2012.002.00-2.00----------------------------------------------------------------------------------------------------------------
......................GGCGGGTTCGTGGTGAGAAGC...............................................................................................................................................................................................................2112.002.00----------2.00-------------------------------------------------------------------------------------------------------
................................................AGGTAACCGCTTCCCTCTA.......................................................................................................................................................................................1911.001.00----------------------------------------------------------------------1.00-------------------------------------------
............................................................................................................AGTGTTGGTCGGCAGTTGCA..........................................................................................................................201.000.00-1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................CACAGTGTTGGTCGGCAGTTG............................................................................................................................2111.001.00------------------------------------------------------1.00-----------------------------------------------------------
..............................................................................................................TGTTGGTCGGCAGTTGTAG.........................................................................................................................1911.001.00---------------------------1.00--------------------------------------------------------------------------------------
.....CAGGATTGAAACAAGATGGCGGGTTCG..........................................................................................................................................................................................................................2711.001.001.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................CAGTGTTGGTCGGCAGTTGT...........................................................................................................................2011.001.00--------------------------------------------------------------------------------------1.00---------------------------
................CAAGATGGCGGGTTCGTGG.......................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00--------------------------------------------
.....CAGGATTGAAACAAGATGGCGGC..............................................................................................................................................................................................................................231.000.00---1.00--------------------------------------------------------------------------------------------------------------
..................................GTGAGAAGCCGTCAAGG.......................................................................................................................................................................................................1711.001.00---1.00--------------------------------------------------------------------------------------------------------------
.................AAGATGGCGGGTTCGTACC......................................................................................................................................................................................................................191.000.00---------------------------------------------------1.00--------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGGTCTCCCGC..............................................................................................................2511.001.00-1.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................ACAGTGTTGGTCGGCAGTTGTAGAGGT.....................................................................................................................2711.001.00--------------------------------------------------------------------------------------------------------1.00---------
.................AAGATGGCGGGTTCGTG........................................................................................................................................................................................................................1711.001.00-1.00----------------------------------------------------------------------------------------------------------------
..............AACAAGATGGCGGGTTCGTGG.......................................................................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------------------------------------------------------------
...ACCAGGATTGAAACAAGATGGCGGGTTCG..........................................................................................................................................................................................................................2911.001.00----1.00-------------------------------------------------------------------------------------------------------------
..........................................................................................................................GTTGTAGAGGTCTCCCG...............................................................................................................1711.001.00-------------------------------------------------------------------------------1.00----------------------------------
........................CGGGTTCGTGGTGAGAAGCCGTC...........................................................................................................................................................................................................2311.001.00------1.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................TGGTCGGCAGTTGTAGAGGT.....................................................................................................................2011.001.00-1.00----------------------------------------------------------------------------------------------------------------
...................................TGAGAAGCCGTCAAGGAGT....................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------------1.00-------------
........................CGGGTTCGTGGTGAGAAGCCGTCA..........................................................................................................................................................................................................2411.001.00-------------------------1.00----------------------------------------------------------------------------------------
...................................................................................................................GTCGGCAGTTGTAGAGG......................................................................................................................1711.001.00-----------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................GTTGGTCGGCAGTTGTAGAGGG.....................................................................................................................221.000.00---------------------------------------------------------------------------1.00--------------------------------------
...............................................................................AGGACTTCCTCGAAACTGGGCA.....................................................................................................................................................2211.001.00------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................TTGGTCGGCAGTTGTAGAGG......................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------------------------------------
........................................................................................................CCACAGTGTTGGTCGGCAGGT.............................................................................................................................211.000.00-------------------------------------------------------------------------------------1.00----------------------------
.......................................................................................................................GCAGTTGTAGAGGTCTCC.................................................................................................................1811.001.00------------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................TCCCACAGTGTTGGTCGG..................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------------------------
.................................GGTGAGAAGCCGTCAAGG.......................................................................................................................................................................................................1811.001.00--------------------------------------------------1.00---------------------------------------------------------------
...............................................................................AGGACTTCCTCGAAACTGGGC......................................................................................................................................................2111.001.00------1.00-----------------------------------------------------------------------------------------------------------
...............................................................................AGGACTTCCTCGAAACTGG........................................................................................................................................................1911.001.00--------------------------------------------1.00---------------------------------------------------------------------
..GACCAGGATTGAAACAAGATGGCTGGT.............................................................................................................................................................................................................................271.000.00-----1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CCCGGCAGGGCGAGGTCTC...................................................................................191.000.00------------------------------------------------------------------------------------------------------1.00-----------
..............................................................................................................................................GTCGTTCCCGGCAGGGC...........................................................................................1711.001.00---1.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TTCCCGGCAGGGCGAGTGCA....................................................................................201.000.00------------------------------------------------------------------------------------------------1.00-----------------
.....................................................................................................................CGGCAGTTGTAGAGGTCTC..................................................................................................................1911.001.00--------------------------------------------1.00---------------------------------------------------------------------
.......................................................................................................................GCAGTTGTAGAGGTCTCCCGC..............................................................................................................2111.001.00-------------------------------1.00----------------------------------------------------------------------------------
....................ATGGCGGGTTCGTGGTGAATT.................................................................................................................................................................................................................2111.001.00-1.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................CCCGCCTGTCGTTCCTT..................................................................................................171.000.00--------------------------------------------------------------------------------1.00---------------------------------
.......................GCGGGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------1.00------------------
..............................CGTGGTGAGAAGCCGTC...........................................................................................................................................................................................................1711.001.00--1.00---------------------------------------------------------------------------------------------------------------
......................GGCGGGTTCGTGGTGAG...................................................................................................................................................................................................................1711.001.00--------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................GTCCCACAGTGTTGGTCGGCAGTTGTAG.........................................................................................................................2811.001.00----1.00-------------------------------------------------------------------------------------------------------------
.......................GCGGGTTCGTGGTGAGAA.................................................................................................................................................................................................................1811.001.00-------------------------------------------1.00----------------------------------------------------------------------
.....................................................................CCTCCTGTCGAGGACTTCCTC................................................................................................................................................................2111.001.00------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................GAGGACTTCCTCGAAACTGGGCA.....................................................................................................................................................2311.001.00----------------------------------------------------------------------------------1.00-------------------------------
..........................GGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------------------1.00--------------
................CAAGATGGCGGGTTCGTGGT......................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------1.00----------------------------------------------------
.......................GCGGGTTCGTGGTGAGA..................................................................................................................................................................................................................1711.001.00-----------------------------1.00------------------------------------------------------------------------------------
...ACCAGGATTGAAACAAGATGGCGGG..............................................................................................................................................................................................................................2511.001.00---1.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................ACAGTGTTGGTCGGCAGGTGT...........................................................................................................................211.000.00-----------------------------------------1.00------------------------------------------------------------------------
.....................TGGCGGGTTCGTGGTGAGAAGC...............................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------1.00------------------------------------------------
...........................GTTCGTGGTGAGAAGCC..............................................................................................................................................................................................................1711.001.00----------------------------------------------------1.00-------------------------------------------------------------
.GGACCAGGATTGAAATTTT......................................................................................................................................................................................................................................191.000.00----1.00-------------------------------------------------------------------------------------------------------------
......AGGATTGAAACAAGATGGC.................................................................................................................................................................................................................................1911.001.00----1.00-------------------------------------------------------------------------------------------------------------
.....................TGGCGGGTTCGTGGTGAGAAGCC..............................................................................................................................................................................................................2311.001.00-------------------------------------------1.00----------------------------------------------------------------------
........GATTGAAACAAGATGGCGGGTTC...........................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00------------------------------------
........................CGGGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................2111.001.00--------1.00---------------------------------------------------------------------------------------------------------
............................TTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................1711.001.00---1.00--------------------------------------------------------------------------------------------------------------
...........................GTTCGTGGTGAGAAGCCGTTA..........................................................................................................................................................................................................211.000.00----------------1.00-------------------------------------------------------------------------------------------------
...............ACAAGATGGCGGGTTCGTGGTGA....................................................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------1.00---------------------------------------
...........................GTTCGTGGTGAGAAGCCGTCA..........................................................................................................................................................................................................2111.001.00----------------1.00-------------------------------------------------------------------------------------------------
.....................................................................CCTCCTGTCGAGGACTTCC..................................................................................................................................................................1911.001.00---1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................TGGTCGGCAGTTGTAGAGGTCTG..................................................................................................................231.000.00----------------------------------------------------------------------------------------------1.00-------------------
...........................GTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------------------------
.........................GGGTTCGTGGTGAGAAGCC..............................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------------1.00-----------------------
........................................AGCCGTCAAGGTAACCGC................................................................................................................................................................................................1811.001.00--1.00---------------------------------------------------------------------------------------------------------------
....................................................................................................AGTCCCACAGTGTTGGTCGGCAGTTGTAGAGGT.....................................................................................................................3311.001.00-----------------------------------------------------------1.00------------------------------------------------------
...........TGAAACAAGATGGCGGGTTCGTGGTGAGAAGCCGT............................................................................................................................................................................................................3511.001.00--------------1.00---------------------------------------------------------------------------------------------------
....................ATGGCGGGTTCGTGGTGA....................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------1.00----------------------
...................................................................................................................GTCGGCAGTTGTAGAGGGC....................................................................................................................1911.001.001.00-----------------------------------------------------------------------------------------------------------------
..............AACAAGATGGCGGGTTCGTGGTGAGAAGCCG.............................................................................................................................................................................................................3111.001.00------------------------------------------------------------------------------1.00-----------------------------------
.......................................................................................................................GCAGTTGTAGAGGTCTCCCGCC.............................................................................................................2211.001.00-----1.00------------------------------------------------------------------------------------------------------------
................................................................................................................TTGGTCGGCAGTTGTAGAGGTCTCCC................................................................................................................2611.001.00------1.00-----------------------------------------------------------------------------------------------------------
..................AGATGGCGGGTTCGTGGTGAGAAGCC..............................................................................................................................................................................................................2611.001.00----------------------------------------------------------------------------------------------------------1.00-------
.................................................................................................................TGGTCGGCAGTTGTAGA........................................................................................................................1711.001.00--------------------------------1.00---------------------------------------------------------------------------------
..............................CGTGGTGAGAAGCCGTCAAGGTAACCGC................................................................................................................................................................................................2811.001.00----------------------------------------1.00-------------------------------------------------------------------------
.............................................................................................................GTGTTGGTCGGCAGTTGTAGAGGTCTG..................................................................................................................271.000.00--------------------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................................AGAAGAGCCGGCATGTGGCTGCGCGC.............................261.000.00---------------------------------------------------------------------------------------1.00--------------------------
..................................................................................ACTTCCTCGAAACTGGGC......................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------1.00------
......................GGCGGGTTCGTGGTGAGAAG................................................................................................................................................................................................................2011.001.00------------------------------------1.00-----------------------------------------------------------------------------
.....CAGGATTGAAACAAGATGGCGGG..............................................................................................................................................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................TCGGCAGTTGTAGAGGTC....................................................................................................................1811.001.00------------------------1.00-----------------------------------------------------------------------------------------
................................TGGTGAGAAGCCGTCAAGGT......................................................................................................................................................................................................2011.001.00-----1.00------------------------------------------------------------------------------------------------------------
.......................GCGGGTTCGTGGTGAGAAGG...............................................................................................................................................................................................................201.000.00-----------------------------------1.00------------------------------------------------------------------------------
..GACCAGGATTGAAACAAGATGGCGG...............................................................................................................................................................................................................................2511.001.00----------------------------------------------1.00-------------------------------------------------------------------
..GACCAGGATTGAAACAAGATGG..................................................................................................................................................................................................................................2211.001.00-----------------------------------------------1.00------------------------------------------------------------------
.........................................................................CTGTCGAGGACTTCCTCGA..............................................................................................................................................................1911.001.00---------------------------------------------------------------------------------1.00--------------------------------
..GACCAGGATTGAAACAAGATGGCGGGT.............................................................................................................................................................................................................................2711.001.00-----1.00------------------------------------------------------------------------------------------------------------
...............ACAAGATGGCGGGTTCGTGG.......................................................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------------------------------------
.........ATTGAAACAAGATGGCGGGTTCGTGGTGAGAAG................................................................................................................................................................................................................3311.001.00---------1.00--------------------------------------------------------------------------------------------------------
..........................................................................................................ACAGTGTTGGTCGGCAGTT.............................................................................................................................1911.001.00---------------------------------------------------------------------------------------------------------1.00--------
...................................................................................................................GTCGGCAGTTGTAGAGGTC....................................................................................................................1911.001.00-1.00----------------------------------------------------------------------------------------------------------------
.............................TCGTGGTGAGAAGCCGTC...........................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................CGGCAGTTGTAGAGGTCTCCCGCCTGTC.........................................................................................................2811.001.00--------------------------------------------------------------------------------------------------------------1.00---
..................................................................................................................................GGTCTCCCGCCTGTCCC.......................................................................................................1730.330.33--------------------------------------------------0.33---------------------------------------------------------------
..................................................................................................................................GGTCTCCCGCCTGTCCCCG.....................................................................................................1930.330.33----------------------------------------------------------------------------------------------------------------0.33-
..................................................................................................................................GGTCTCCCGCCTGTC.........................................................................................................1530.330.33-------------------------------------------------0.33----------------------------------------------------------------
........................................................................................................................CAGTTGTAGAGGTCTC..................................................................................................................1640.250.25-----------------------------------------------------------------------------------------------------------------0.25

Antisense strand
GGGACCAGGATTGAAACAAGATGGCGGGTTCGTGGTGAGAAGCCGTCAAGGTAACCGCTTCCCTCTACTCCTCCTGTCGAGGACTTCCTCGAAACTGGGCAGTCCCACAGTGTTGGTCGGCAGTTGTAGAGGTCTCCCGCCTGTCGTTCCCGGCAGGGCGAGGTTGCCTGCATCCCCAGCCTTTGTCCTTCCTGCAGAAGAGCCGGCATGTGGCTGCGCGTTTCTTATAGCGCCCCCTTTGTTCCCTGGC
............................................................................((((((....)))))).....((.((.((.((((((((....)))).))))...)).)))).................................................................................................................
..........................................................................75............................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................AAGGCTGGGGATGCAGGCA................................................................... 1912.002.00------------------------------------------------2.00-----------------------------------------------------------------
.................................................................................................................................CTGCCGGGAACGACAGGCGGGAGACCT.............................................................................................. 2711.001.00--------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................AGGACAAAGGCTGGGGATG............................................................. 1911.001.00-----------------------------------------------------------------------------------1.00------------------------------
...............................................................................................................................................................................................................................GGGAACAAAGGGGGCGCTATAAG.... 2311.001.00---------------------------------------------------------------------------------------------------------------1.00--
............................................GTCAAGGTAACCGCTTCAAAA......................................................................................................................................................................................... 211.000.00-------------------------------------------------------------------------1.00----------------------------------------
...................................................................................................................................................................................................................................CAGGGAACAAAGGGGGCGCTA.. 2111.001.00--------------------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................AGGCTGGGGATGCAGGCAA.................................................................... 1911.001.00-------------------------------1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGGGAACAAAGGGGGCGCTATAAGAA... 2611.001.00--------------------------1.00---------------------------------------------------------------------------------------
.....................................................GGAGGAGTAGAGGGAAGCGGT................................................................................................................................................................................ 2111.001.00----------------------------------------------------------------------------1.00-------------------------------------
........................................................................................................................................................................TGCATCCCCAGCCTTTGTC............................................................... 191.000.00--------------------------------------------------------------------1.00---------------------------------------------
.................................................................................................................................................................................................................................AGGGAACAAAGGGGGCGCTATA... 2211.001.00-----------------------------1.00------------------------------------------------------------------------------------
.........................................................................................................................................................................AGGACAAAGGCTGGGGATGC............................................................. 2011.001.00-----------------------------------------------------------------------------------------------------1.00------------
.......................................................GAGGAGTAGAGGGAAGCG................................................................................................................................................................................. 1811.001.00---------------------------------------------------------------1.00--------------------------------------------------
.........................................................................................................................................................................GGACAAAGGCTGGGGATGC.............................................................. 1911.001.00-----------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CCCTTTGTTCCCTGGCTGC 191.000.00-------------------------------------------------------1.00----------------------------------------------------------