ID: uc001suk.2_intron_3_0_chr12_69210667_f.3p
GENE: (4)
chr12:69233399-69233648+


(1)
AGO1.ip 		(1)
AGO2.ip 		(7)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(6)
HEART 		(3)
HELA 		(1)
KIDNEY 		(11)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGGGAAGAAACCCAAGACAAAGAAGAGAGTGTGGAATCTAGTTTGCCCCTTAATGCCATTGAACCTTGTGTGATTTGTCAAGGTCGACCTAAAAATGGTTGCATTGTCCATGGCAAAACAGGACATCTTATGGCCTGCTTTACATGTGCAAAGAAGCTAAAGAAAAGGAATAAGCCCTGCCCAGTATGTAGACAACCAATTCAAATGATTGTGCTAACTTATTTCCCCTAGTTGACCTGTCTATAAGAGA
......................................................................................................................((((....(((((..(((.(((((.....((......)))))))...))).))))).)))).......................................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343335SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR343337
....................AGAAGAGAGTGTGGAATCT...................................................................................................................................................................................................................19113.0013.003.00--4.00-----1.00----------------2.00--------1.001.00------------------------------------1.00-----
..........................................................................................................................ACATCTTATGGCCTGCTTTACATG........................................................................................................24111.0011.00-6.002.00--3.00-------------------------------------------------------------------------
....................AGAAGAGAGTGTGGAATA....................................................................................................................................................................................................................187.000.003.00--1.00-----3.00---------------------------------------------------------------------
....................AGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................1817.007.00----1.00--1.00-1.00---2.00----------------------------1.00------------1.00-----------------------
.................CAAAGAAGAGAGTGTGG........................................................................................................................................................................................................................1727.007.00------7.00------------------------------------------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTG.......................................2016.006.00-1.005.00----------------------------------------------------------------------------
..........................................................................................................................ACATCTTATGGCCTGCTTTACAT.........................................................................................................2314.004.00--1.00--2.00--1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................GTGCTAACTTATTTCCCCTAG...................2114.004.00-3.00------1.00----------------------------------------------------------------------
........................................................................................................................................................................AATAAGCCCTGCCCAGTATGTAGATTTT......................................................283.000.00-----------------3.00-------------------------------------------------------------
........................GAGAGTGTGGAATCTAGTTTGCCC..........................................................................................................................................................................................................2413.003.00-----------3.00-------------------------------------------------------------------
....................AGAAGAGAGTGTGGAATCTAG.................................................................................................................................................................................................................2113.003.001.00---------------------------2.00--------------------------------------------------
....................AGAAGAGAGTGTGGAATCTA..................................................................................................................................................................................................................2013.003.00---2.00---1.00-----------------------------------------------------------------------
..............AGACAAAGAAGAGAGTGTGGAACC....................................................................................................................................................................................................................243.000.00----2.00-------1.00------------------------------------------------------------------
......................................................................................................................................................................................AGTATGTAGACAACCAATT.................................................1913.003.00----------3.00--------------------------------------------------------------------
...............................................................................................................................................................................CCTGCCCAGTATGTAGAC.........................................................1813.003.00----------------3.00--------------------------------------------------------------
................ACAAAGAAGAGAGTGTGGAAT.....................................................................................................................................................................................................................2113.003.001.00------------2.00-----------------------------------------------------------------
.............AAGACAAAGAAGAGAGTGTG.........................................................................................................................................................................................................................2013.003.00---1.00----------------1.001.00---------------------------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTGTGCTAACT...............................2812.002.00--2.00----------------------------------------------------------------------------
...............GACAAAGAAGAGAGTGTGGA.......................................................................................................................................................................................................................2012.002.00-----------2.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................CTAACTTATTTCCCCTAGTTGACCTGTCTATAAG...3412.002.00--------2.00----------------------------------------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTGTG.....................................2212.002.00--2.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................ATTGTGCTAACTTATTTCCCCTAG...................2412.002.00-2.00-----------------------------------------------------------------------------
....................AGAAGAGAGTGTGGAATCTAA.................................................................................................................................................................................................................2112.003.00-----------------------2.00-------------------------------------------------------
.........................................................................................................................................................AAGCTAAAGAAAAGGAACAAG............................................................................212.000.00-----2.00-------------------------------------------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTGTGCTAACTTA.............................3012.002.00--2.00----------------------------------------------------------------------------
.............AAGACAAAGAAGAGAGTGTGGAAT.....................................................................................................................................................................................................................2412.002.001.00----------------------------------------------1.00-------------------------------
........................................................................................................................................................................AATAAGCCCTGCCCAGTATGTAGACA........................................................2612.002.00---------------------------1.00-----------------------------------------1.00---------
....................AGAAGAGAGTGTGGAATT....................................................................................................................................................................................................................182.000.00-------1.00--------------------------------------------------------------1.00--------
..................AAAGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................2012.002.001.00-------------1.00----------------------------------------------------------------
.....................GAAGAGAGTGTGGAATCT...................................................................................................................................................................................................................1812.002.00---2.00---------------------------------------------------------------------------
.................CAAAGAAGAGAGTGTGGATT.....................................................................................................................................................................................................................2012.001.00-------------------------2.00-----------------------------------------------------
.....................................................................................................................................................................................................................CTAACTTATTTCCCCTAG...................1812.002.00-2.00-----------------------------------------------------------------------------
................................................................................................................................................................................................CAACCAATTCAAATGATTGTG.....................................2112.002.00------------------------2.00------------------------------------------------------
........................................................................................................................GGACATCTTATGGCCTGCTTTAC...........................................................................................................2312.002.00---------------2.00---------------------------------------------------------------
........................................................................................................................................................................AATAAGCCCTGCCCAGCATG..............................................................202.000.00-1.00---1.00-------------------------------------------------------------------------
.........................................................................TTTGTCAAGGTCGACCTAAAAATGGTTGCATTGT...............................................................................................................................................3412.002.00---------------------------------------1.00----------------------------------1.00----
........................................................................................................................................................................................TATGTAGACAACCAATTCAAATG...........................................2312.002.00--1.00------------------------1.00---------------------------------------------------
...........................................................................................................................................................................................................AATGATTGTGCTAACTTATTT..........................2112.002.002.00------------------------------------------------------------------------------
........AACCCAAGACAAAGAAGAGAGT............................................................................................................................................................................................................................2212.002.00---1.00-------------------------1.00-------------------------------------------------
....................................................................................................................................................................AAGGAATAAGCCCTGCCCAGTATGTAGACA........................................................3012.002.00----2.00--------------------------------------------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATG...........................................1681.381.38-0.500.50--0.12------------------------------------------------------------------------0.25
.............................................................................................................ATGGCAAAACAGGACATC...........................................................................................................................1811.001.00---1.00---------------------------------------------------------------------------
..................AAAGAAGAGAGTGTGGAATCTAGTTTGCC...........................................................................................................................................................................................................2911.001.00---1.00---------------------------------------------------------------------------
.............AAGACAAAGAAGAGAGTGTGGAATA....................................................................................................................................................................................................................2511.002.00---1.00---------------------------------------------------------------------------
................ACAAAGAAGAGAGTGTGGAATCT...................................................................................................................................................................................................................2311.001.00---------------------------------------------------------------1.00---------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTGTGCTAAC................................2711.001.00--1.00----------------------------------------------------------------------------
...........CCAAGACAAAGAAGAGAGTGTG.........................................................................................................................................................................................................................2211.001.00-------------------------------1.00-----------------------------------------------
............................................................................................................................ATCTTATGGCCTGCTTTACA..........................................................................................................2011.001.001.00------------------------------------------------------------------------------
................................................................................................................................TATGGCCTGCTTTACATGTGCAAAGAAGC.............................................................................................2911.001.00--------------1.00----------------------------------------------------------------
...................................................................................................................................................................................CCCAGTATGTAGACAACCAATT.................................................2211.001.00---------------------------------------------------------------------------1.00---
.............AAGACAAAGAAGAGAGTGT..........................................................................................................................................................................................................................1911.001.001.00------------------------------------------------------------------------------
............................................................................................................................ATCTTATGGCCTGCTTTATA..........................................................................................................201.000.001.00------------------------------------------------------------------------------
...................AAGAAGAGAGTGTGGAATT....................................................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------------------------------
...........CCAAGACAAAGAAGAGAGTGTGGAAT.....................................................................................................................................................................................................................2611.001.00---------------------------------------------------1.00---------------------------
......................AAGAGAGTGTGGAATCTAGTTTGCCCCC........................................................................................................................................................................................................281.000.00------------1.00------------------------------------------------------------------
.............................................................................................................ATGGCAAAACAGGACATCTT.........................................................................................................................2011.001.00-----------------------------------------------------1.00-------------------------
.............................................................................................................................................................................GCCCTGCCCAGTATGTAGACAACC.....................................................2411.001.001.00------------------------------------------------------------------------------
................................................................................................................................................................................CTGCCCAGTATGTAGACAATA.....................................................211.000.001.00------------------------------------------------------------------------------
......................AAGAGAGTGTGGAATCTAGTTTGCCC..........................................................................................................................................................................................................2611.001.00--------------1.00----------------------------------------------------------------
........................................................................................................................................................................AATAAGCCCTGCCCAGTATA..............................................................201.000.00--1.00----------------------------------------------------------------------------
..........................................................TTGAACCTTGTGTGATTTGTCAAGGTCGACCTAAA.............................................................................................................................................................3511.001.00------------------------------------------------------------------------1.00------
.....................................................................................................................................................................................................................CTAACTTATTTCCCCCAG...................181.000.00-----1.00-------------------------------------------------------------------------
..............................................CCCTTAATGCCATTGAACCTTGT.....................................................................................................................................................................................2311.001.00-------------------------------------------1.00-----------------------------------
............................................................................................................................ATCTTATGGCCTGCTTTACG..........................................................................................................201.000.00-----1.00-------------------------------------------------------------------------
..........................................................................................................................................................................................................AAATGATTGTGCTAACTTATTT..........................2211.001.001.00------------------------------------------------------------------------------
........................................................................................................TGTCCATGGCAAAACAGG................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------
..............AGACAAAGAAGAGAGTGTGGAATCTAG.................................................................................................................................................................................................................2711.001.00----1.00--------------------------------------------------------------------------
......................................................................................ACCTAAAAATGGTTGCATTG................................................................................................................................................2011.001.00-1.00-----------------------------------------------------------------------------
............CAAGACAAAGAAGAGAGTGTGGAATCTAGT................................................................................................................................................................................................................3011.001.001.00------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTAACTTATTTCCCCTAGTTGACCTG...........2611.001.00--1.00----------------------------------------------------------------------------
.................CAAAGAAGAGAGTGTGGA.......................................................................................................................................................................................................................1811.001.00-----------------------------------------1.00-------------------------------------
...............GACAAAGAAGAGAGTGTGGAATA....................................................................................................................................................................................................................231.000.001.00------------------------------------------------------------------------------
...............................................................................................................................................................................CCTGCCCAGTATGTAGACAACCAACTC................................................271.000.00------------1.00------------------------------------------------------------------
............CAAGACAAAGAAGAGAGTGTG.........................................................................................................................................................................................................................2111.001.001.00------------------------------------------------------------------------------
............................................................................................................................................TACATGTGCAAAGAAGCTAA..........................................................................................2011.001.00-1.00-----------------------------------------------------------------------------
..................................................................................................................................TGGCCTGCTTTACATGTGC.....................................................................................................1911.001.00----------------------1.00--------------------------------------------------------
............................................................................................................................................................................................................ATGATTGTGCTAACTTATTTCCCCTAGTTGAC..............3211.001.00----------------------------------1.00--------------------------------------------
.........................................................................................................................................................................................................CAAATGATTGTGCTAACTTATT...........................2211.001.00---1.00---------------------------------------------------------------------------
............................................................................................................................................................................................................ATGATTGTGCTAACTTATTTCCCCT.....................2511.001.00------------------------------------------------------------1.00------------------
...................AAGAAGAGAGTGTGGAATCT...................................................................................................................................................................................................................2011.001.00------------------------------------------------1.00------------------------------
............................................................................................................................................................................................................ATGATTGTGCTAACTTATTTCCCCTA....................2611.001.001.00------------------------------------------------------------------------------
......................................................................................................................................................................GGAATAAGCCCTGCCCAGTATGTAGAC.........................................................2711.001.00------------------------------1.00------------------------------------------------
..................AAAGAAGAGAGTGTGGAAT.....................................................................................................................................................................................................................1911.001.00--------------------------------------------1.00----------------------------------
..............AGACAAAGAAGAGAGTGTGGAATCT...................................................................................................................................................................................................................2511.001.00--------------------------------------1.00----------------------------------------
...................AAGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................1911.001.00------------------------------1.00------------------------------------------------
..............................................................................................................TGGCAAAACAGGACATCT..........................................................................................................................1811.001.00-------1.00-----------------------------------------------------------------------
.......................................................................................................................................................................................GTATGTAGACAACCAATTCA...............................................2011.001.001.00------------------------------------------------------------------------------
...................AAGAAGAGAGTGTGGAATCTAGTTTGCC...........................................................................................................................................................................................................2811.001.001.00------------------------------------------------------------------------------
........................................................................................................................................................GAAGCTAAAGAAAAGGAATAAGAC..........................................................................241.000.00-------1.00-----------------------------------------------------------------------
..................................................................................................................AAAACAGGACATCTTTAAG.....................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------
...............GACAAAGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00----------------------------
....................AGAAGAGAGTGTGGAATCTAGTTTGCCC..........................................................................................................................................................................................................2811.001.001.00------------------------------------------------------------------------------
......................................................................................................................................................................................................................TAACTTATTTCCCCTAG...................1711.001.00-1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................AAATGATTGTGCTAACTTATTTCCCCTT....................281.000.00--1.00----------------------------------------------------------------------------
................................................................................................................................................................................CTGCCCAGTATGTAGACAACC.....................................................2111.001.00-------------------------------------1.00-----------------------------------------
...............................................................................................................................................................................................ACAACCAATTCAAATGATTGTGCTAACTTAT............................3111.001.00--1.00----------------------------------------------------------------------------
..................................................................................................................................................................................................................GTGCTAACTTATTTCCCC......................1811.001.00----1.00--------------------------------------------------------------------------
...................AAGAAGAGAGTGTGGAATCTAGT................................................................................................................................................................................................................2311.001.00--------------------------------------------------------1.00----------------------
..........................................................................................................................ACATCTTATGGCCTGCTTTACATGTG......................................................................................................2611.001.00------------------1.00------------------------------------------------------------
............................................................................................................CATGGCAAAACAGGACAT............................................................................................................................1811.001.00----------1.00--------------------------------------------------------------------
................................................................................................GGTTGCATTGTCCATGGCAAAACAGGACAT............................................................................................................................3011.001.00-------------------------------------------------------------------1.00-----------
.....................................................................................................................................................................................CAGTATGTAGACAACCA....................................................1711.001.00------------------1.00------------------------------------------------------------
...........................................................................................................................................................................AAGCCCTGCCCAGTATGTAGACAACCAAC..................................................291.000.00------------1.00------------------------------------------------------------------
......................................................................................................................................................................................AGTATGTAGACAACCAATTA................................................2011.003.00----------1.00--------------------------------------------------------------------
..............AGACAAAGAAGAGAGTGTGGACC.....................................................................................................................................................................................................................231.000.00----1.00--------------------------------------------------------------------------
.........ACCCAAGACAAAGAAGAGAGTGTG.........................................................................................................................................................................................................................2411.001.00---------------1.00---------------------------------------------------------------
....................................................................................................................................................................................CCAGTATGTAGACAACCAA...................................................1911.001.00--------------------------------------------------------------1.00----------------
.............................................................AACCTTGTGTGATTTGTC...........................................................................................................................................................................1811.001.00-----------------------------1.00-------------------------------------------------
............................................................................................................................................................................AGCCCTGCCCAGTATGTAGACAAC......................................................2411.001.00---1.00---------------------------------------------------------------------------
................ACAAAGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------1.00--
.......................AGAGAGTGTGGAATCTAGTTTGCCCC.........................................................................................................................................................................................................2611.001.00----1.00--------------------------------------------------------------------------
........................GAGAGTGTGGAATCTAGTTTGCCCCTTA......................................................................................................................................................................................................2811.001.00---1.00---------------------------------------------------------------------------
.......................................................................................................................................................................................................TTCAAATGATTGTGCTAACTTA.............................2211.001.00--------------------1.00----------------------------------------------------------
......................................................................................................................................................AAGAAGCTAAAGAAAAGGAATAAG............................................................................2411.001.00----------------------------------------------------------1.00--------------------
.............................................................................................................................TCTTATGGCCTGCTTTAC...........................................................................................................1811.001.00-------------------------------------------------1.00-----------------------------
.....................................................................................................................................................................AGGAATAAGCCCTGCCCAGTATGTAGACA........................................................2911.001.00----------------------------------------------1.00--------------------------------
....................AGAAGAGAGTGTGGAATCTAGTTTGCC...........................................................................................................................................................................................................2711.001.001.00------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTAACTTATTTCCCCTAGTTGACCTGTCTATA.....3211.001.00--------1.00----------------------------------------------------------------------
..................................................................TGTGTGATTTGTCAAGGTCGACCT................................................................................................................................................................2411.001.001.00------------------------------------------------------------------------------
................................................................CTTGTGTGATTTGTCAAG........................................................................................................................................................................1811.001.00------------------------------------------------------------------1.00------------
.......................................................................................................................................................................................................................AACTTATTTCCCCTAGTTG................1911.001.00-----------------------------------------------------------1.00-------------------
.........................................................................................................................................................................................................................CTTATTTCCCCTAGTTGACCTGTCTATAA....2911.001.00--------------------------------------------------------------------1.00----------
...........................................................................................................................................................................................................AATGATTGTGCTAACTTATTTCCCCT.....................2611.001.00-------------------------------1.00-----------------------------------------------
.....................GAAGAGAGTGTGGAATCTA..................................................................................................................................................................................................................1911.001.00----------------------------------------1.00--------------------------------------
................................................................CTTGTGTGATTTGTCAAGGT......................................................................................................................................................................2011.001.00---------------------------------1.00---------------------------------------------
.................CAAAGAAGAGAGTGTGGAATC....................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------1.00-------------
...........................................................................................................................................................................................................AATGATTGTGCTAACTTATTTCCCCTAG...................2811.001.00-1.00-----------------------------------------------------------------------------
....................................................................................................................................................................AAGGAATAAGCCCTGCCCAGTATG..............................................................2411.001.00---1.00---------------------------------------------------------------------------
....................................................................TGTGATTTGTCAAGGTCGACC.................................................................................................................................................................2111.001.00----------------------1.00--------------------------------------------------------
..............................................................................................................................................................................CCCTGCCCAGTATGTAGACAACCAACTC................................................281.000.00------------1.00------------------------------------------------------------------
...............................................................................................................................................................................CCTGCCCAGTATGTAGA..........................................................1711.001.00----------------------------------------------------------------1.00--------------
.........................................................................................................................................................................................ATGTAGACAACCAATTCAAATGA..........................................2311.001.00-------------------------------------------------------------1.00-----------------
......................................................................................................................................................................................AGTATGTAGACAACCAATTCAAATG...........................................2511.001.00-----------------------------------------------------------------------1.00-------
......................................................................................................................................................AAGAAGCTAAAGAAAAGGAATA..............................................................................2211.001.001.00------------------------------------------------------------------------------
.....................................................................................................................................................................................CAGTATGTAGACAACCAATTCAAATGATT........................................2911.001.00--------------1.00----------------------------------------------------------------
.........................................................................................................................................CTTTACATGTGCAAAG.................................................................................................1650.600.60-----0.60-------------------------------------------------------------------------
..........................................................................................................................................................................................................AAATGATTGTGCTAACT...............................1720.500.50--------------------------------0.50----------------------------------------------
......................................................................................ACCTAAAAATGGTTGCAT..................................................................................................................................................1830.330.33---------------------------------0.33---------------------------------------------
.........................................................................................................................................CTTTACATGTGCAAAGA................................................................................................1740.250.25-----------------------------------------------------------------------------0.25-
...........CCAAGACAAAGAAGAGAGT............................................................................................................................................................................................................................1940.250.250.25------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACTTATTTCCCCTAG...................1550.200.20-0.20-----------------------------------------------------------------------------

Antisense strand
AGGGAAGAAACCCAAGACAAAGAAGAGAGTGTGGAATCTAGTTTGCCCCTTAATGCCATTGAACCTTGTGTGATTTGTCAAGGTCGACCTAAAAATGGTTGCATTGTCCATGGCAAAACAGGACATCTTATGGCCTGCTTTACATGTGCAAAGAAGCTAAAGAAAAGGAATAAGCCCTGCCCAGTATGTAGACAACCAATTCAAATGATTGTGCTAACTTATTTCCCCTAGTTGACCTGTCTATAAGAGA
......................................................................................................................((((....(((((..(((.(((((.....((......)))))))...))).))))).)))).......................................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343335SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR343337
........................................................................................................................................CCTTTTCTTTAGCTTCTTTGCACATGTAAAGC.................................................................................. 3211.001.00-------------------1.00-----------------------------------------------------------
............................................................................................................CATGGCAAAACAGGACCT............................................................................................................................ 181.000.00---------------------------------------------------------1.00---------------------
..............................................................................................................................................................................................................................CTTATAGACAGGTCAACTAGGGGAA... 2511.001.00----------------------------------------------------1.00--------------------------
............................................................................................................CATGGCAAAACAGGACATT........................................................................................................................... 191.000.00------------------------------------------------------1.00------------------------
....................................................................................................................................................................................................................ACTAGGGGAAATAAGTTAGC.................. 2011.001.00---------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................................CTTATAGACAGGTCAACTAGGGGAAA... 2611.001.00--------------------------------1.00----------------------------------------------
........................................................................................................................................................................AATAAGCCCTGCCCAGTAG............................................................... 191.000.00---------------------------------------------1.00---------------------------------