ID: uc001smz.2_intron_0_0_chr12_57483138_f.5p
GENE: (1)
chr12:57483088-57483337+


(11)
BRAIN
(1)
BREAST
(6)
CELL-LINE
(4)
CERVIX
(3)
HEART
(1)
HELA
(7)
LIVER
(1)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
CCGCCGGGCGGAGGGGACAGCGCCCGCCGGACCCTGCAGCCCAGACTCAAGTTAGTGGGCAAAGGGAGGCAGCGGGGAGTGGAGATGGGTGGAGCTGGACTTGGGAATGGGGTCCAGAGGGCGGAGGTCGAGGGGAGGACGTGGGGAAGCAGGACGGGGGTGGGGGGTGGAGACTGATGGAAAAGGGGGTGCGTCTTCGAATTAGGGGGCCCTGGGAGCAGGCAAGCATCTGATGAAGCTGGATATGAAA
................................................................((((((.(((....................((((((((.......))))))))..(((....)))..........(((.((...((....((....))....)).....)).)))..........)))))))))....................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR040011(GSM532896)
G529T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..................................................................AGGCAGCGGGGAGTGGAGGGTT..................................................................................................................................................................227.000.00--1.002.001.00--1.001.00--------------------------1.00------
..................................................................AGGCAGCGGGGAGTGGAGGGT...................................................................................................................................................................214.000.00-2.00--1.00---1.00---------------------------------
...................................................................................GATGGGTGGAGCTGGTT......................................................................................................................................................173.000.003.00-----------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGGGTA..................................................................................................................................................................223.000.00-1.00----1.001.00----------------------------------
........................................................................................................................................................................GGAGACTGATGGAAAAGGGGGTGCG.........................................................2513.003.003.00-----------------------------------------
.CGCCGGGCGGAGGGGCC........................................................................................................................................................................................................................................172.000.00------------2.00-----------------------------
..................................................................AGGCAGCGGGGAGTGGA.......................................................................................................................................................................1712.002.00-1.00------1.00---------------------------------
..................................................................AGGCAGCGGGGAGTGGTTG.....................................................................................................................................................................192.000.00--1.00----------1.00----------------------------
..............................................TCAAGTTAGTGGGCAAAGGG........................................................................................................................................................................................2012.002.002.00-----------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGAAT...................................................................................................................................................................212.000.00---1.00-1.00------------------------------------
................................................................................................................................................................................ATGGAAAAGGGGGTGCGTCTTCGA..................................................2411.001.00-----------1.00------------------------------
..................................................................AGGCAGCGGGGAGTGGAGCTT...................................................................................................................................................................211.000.00----1.00-------------------------------------
.........................GCCGGACCCTGCAGCCCAGACTCAAG.......................................................................................................................................................................................................2611.001.001.00-----------------------------------------
..................................................................AGGCAGCGGGGAGTGGT.......................................................................................................................................................................171.000.00-----1.00------------------------------------
.................................................................................................................................................................GGGGGGTGGAGACTGCGT.......................................................................181.000.00--------------------------------1.00---------
..................................................................AGGCAGCGGGGAGTGGAGGTTA..................................................................................................................................................................221.000.00-----1.00------------------------------------
.............................................................................................................................................TGGGGAAGCAGGACGAT............................................................................................171.000.00-------------------1.00----------------------
........................................................................................................................................................................GGAGACTGATGGAAAGGC................................................................181.000.00---1.00--------------------------------------
..................................................................AGGCAGCGGGGAGTGGGGGG....................................................................................................................................................................201.000.00------1.00-----------------------------------
..........................................................................GGGAGTGGAGATGGGTAG..............................................................................................................................................................181.000.00------1.00-----------------------------------
..................................................................AGGCAGCGGGGAGTGGAGGAA...................................................................................................................................................................211.000.00-1.00----------------------------------------
.....GGGCGGAGGGGACAGCGCCCGCCGGACCC........................................................................................................................................................................................................................2911.001.00-------------------------1.00----------------
...................................................................................................................................................................................GAAAAGGGGGTGCGTCTTCG...................................................2011.001.00-------------1.00----------------------------
............................................................................GAGTGGAGATGGGTGGAGCTGGACTT....................................................................................................................................................2611.001.00-------------------------------1.00----------
..................................................................AGGCAGCGGGGAGTGGTGG.....................................................................................................................................................................191.000.00---------------1.00--------------------------
..................................................................AGGCAGCGGGGAGTGGTGTA....................................................................................................................................................................201.000.00--------------1.00---------------------------
.CGCCGGGCGGAGGGGCCC.......................................................................................................................................................................................................................................181.000.00---------------------------1.00--------------
...............................................CAAGTTAGTGGGCAAAGGGAGGC....................................................................................................................................................................................2311.001.00------------------------------1.00-----------
..................................................................AGGCAGCGGGGAGTGGATAGT...................................................................................................................................................................2111.002.00-1.00----------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGAGT...................................................................................................................................................................211.000.00----1.00-------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGGGAT..................................................................................................................................................................221.000.00----------1.00-------------------------------
..................................................................AGGCAGCGGGGAGTGGAGGTTT..................................................................................................................................................................221.000.00----------1.00-------------------------------
..................................................................AGGCAGCGGGGAGTGGATAGA...................................................................................................................................................................2111.002.00---1.00--------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGGGAA..................................................................................................................................................................221.000.00--1.00---------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGAGTT..................................................................................................................................................................221.000.00-------1.00----------------------------------
..GCCGGGCGGAGGGGAATGA.....................................................................................................................................................................................................................................191.000.00-----------------1.00------------------------
..........................................................................GGGAGTGGAGATGGGTTGT.............................................................................................................................................................191.000.00-------------------------------------1.00----
...........................................................................................................................................................GGGGGTGGGGGGTGGATTG............................................................................191.000.00----------------1.00-------------------------
..................................................................AGGCAGCGGGGAGTGGAGAGTA..................................................................................................................................................................221.000.00-1.00----------------------------------------
.............................................................................................................GGGTCCAGAGGGCGGGAA...........................................................................................................................181.000.00---------------------------------------1.00--
...............................................................................................................................................................................................................GGCCCTGGGAGCAGGCAAGCATCTGA.................2611.001.00----------------------1.00-------------------
...CCGGGCGGAGGGGACTGCC....................................................................................................................................................................................................................................191.000.00-----1.00------------------------------------
..................................................................AGGCAGCGGGGAGTGGAGAG....................................................................................................................................................................201.000.00------------------------1.00-----------------
....................................................................................................................................................................................................................TGGGAGCAGGCAAGCATCTG..................2011.001.00-----------1.00------------------------------
..................................................................AGGCAGCGGGGAGTGGATGGT...................................................................................................................................................................2111.002.00--1.00---------------------------------------
...................................................................................................................................................................................................................................ATCTGATGAAGCTGGATATG...2020.500.50--------------0.50---------------------------
...................................................................................................................................................AGCAGGACGGGGGTG........................................................................................1530.330.33----------------------------------------0.33-
....CGGGCGGAGGGGACAG......................................................................................................................................................................................................................................1640.250.25-----------------------------------------0.25

Antisense strand
CCGCCGGGCGGAGGGGACAGCGCCCGCCGGACCCTGCAGCCCAGACTCAAGTTAGTGGGCAAAGGGAGGCAGCGGGGAGTGGAGATGGGTGGAGCTGGACTTGGGAATGGGGTCCAGAGGGCGGAGGTCGAGGGGAGGACGTGGGGAAGCAGGACGGGGGTGGGGGGTGGAGACTGATGGAAAAGGGGGTGCGTCTTCGAATTAGGGGGCCCTGGGAGCAGGCAAGCATCTGATGAAGCTGGATATGAAA
................................................................((((((.(((....................((((((((.......))))))))..(((....)))..........(((.((...((....((....))....)).....)).)))..........)))))))))....................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR040011(GSM532896)
G529T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.........................TGGGCTGCAGGGTCCGGC............................................................................................................................................................................................................... 1812.002.00---------2.00--------------------------------
........................................................................................................................................................................................AATTCGAAGACGCACCCCC............................................... 1911.001.00--------------------1.00---------------------
...................................AACTTGAGTCTGGGCTGC..................................................................................................................................................................................................... 1811.001.00--------------------------1.00---------------
.....................GCTGCAGGGTCCGGCGGGC.................................................................................................................................................................................................................. 1911.001.00----------------------------------1.00-------
..................................................................................................................................................................................................CAGGGCCCCCTAATTCGAAG.................................... 2011.001.00--------------------------------------1.00---
........................CTGGGCTGCAGGGTCCGGCG.............................................................................................................................................................................................................. 2011.001.00-----------------------------1.00------------
....................CGCCCGCCGGACCCTGCTTT.................................................................................................................................................................................................................. 201.000.00--1.00---------------------------------------
.........................................................CCACTCCCCGCTGCCTCCCTTTGCC........................................................................................................................................................................ 2511.001.00----------------------------1.00-------------
........................TGGGCTGCAGGGTCCGGCG............................................................................................................................................................................................................... 1911.001.00------------------1.00-----------------------
.................CAGCGCCCGCCGGACGCG....................................................................................................................................................................................................................... 181.000.00------------------------------------1.00-----
.........GGAGGGGACAGCGCCCGCCGCT........................................................................................................................................................................................................................... 221.000.00-----------------------1.00------------------
....................................CTAACTTGAGTCTGGGCTG................................................................................................................................................................................................... 1911.001.00---------------------------------1.00--------