ID: uc001sfh.3_intron_2_0_chr12_54646012_r.3p
GENE: (2)
chr12:54645962-54646211-


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(4)
BREAST
(16)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(4)
LIVER
(2)
OTHER
(1)
RRP40.ip
(25)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AATAAGTCTTTGTGTGGGCTTTTTTTTTTTTTTCATTTTTCCTGGGTAGAAATCTAGGATCAAATTTGTTATCTTCTTTAAAGCATAGGGTTTCTCTGTCCTTTTTGTCCGAATGTCCTCTTTGAAATAAGGCATTGGATTTTTTTCCTCATTCTTTACCCCCCCCTTTTTTTTTTAATTTTCCCATTTTTCTTACCCAGGGAGCACAATACTTGGGAACCTGAGAAAAACTTGGATTGCCCTGAGCTAA
...............................................................................................................................(((((....(((......))).....)))))......................(((((..............)))))..............................................
..........................................................................................................................123................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040019(GSM532904)
G701T. (cervix)
...............................................................................................................................TAAGGCATTGGATTTGA..........................................................................................................1722.000.00------6.00---3.001.001.00-1.00---1.00-----2.00-----1.00-1.00--1.001.00-------1.00-----------1.00---1.00----------
....................................................................................................................................................................CCTTTTTTTTTTAATTTTAAG.................................................................219.000.00--2.001.002.004.00-----------------------------------------------------------------
...............................................................................................................................TAAGGCATTGGATTTGAA.........................................................................................................188.000.00-----------1.001.00----2.00-2.00--------------------1.00-------------1.00----------------
...............................................................................................................................TAAGGCATTGGATTTGAAA........................................................................................................194.000.00----------------------2.00-------------------------1.00---------1.00------------
..............TGGGCTTTTTTTTTTTTTTCTGG.....................................................................................................................................................................................................................233.000.003.00----------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTCG..................................................................................................................................................................................................................223.000.001.00-1.001.00-------------------------------------------------------------------
..................................................................................................................................................................................................................ACTTGGGAACCTGAGAAAAACTTGGA..............2613.003.00---------------2.00----1.00--------------------------------------------------
.....................................................................................................................................................................CTTTTTTTTTTAATTTTCCCAG...............................................................223.000.00--1.001.001.00------------------------------------------------------------------
....................................................................................................................................................................CCTTTTTTTTTTAATTTTTAG.................................................................212.000.00---1.001.00------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCTGGT....................................................................................................................................................................................................................242.000.001.001.00---------------------------------------------------------------------
...................................................................................................................................................................................................................CTTGGGAACCTGAGAAAAACTTGGATTGC..........2912.002.00---------------------------------------1.00----------1.00--------------------
..................CTTTTTTTTTTTTTTCATTTTCTGG...............................................................................................................................................................................................................252.000.00--1.001.00-------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTTTTG...............................................................................................................................................................................................................252.000.00--1.00--1.00-----------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTCTAG...............................................................................................................................................................................................................252.000.00--1.00--1.00-----------------------------------------------------------------
.......................................................................................................................................................................................................................................TTGGATTGCCCTGAGCTA.1812.002.00--------------1.00-------------------------------1.00------------------------
..............TGGGCTTTTTTTTTTTTTTCGGCT....................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
..........................TTTTTTTCATTTTTCCTGGG............................................................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------
...................TTTTTTTTTTTTTTCATTTTTCCGG..............................................................................................................................................................................................................251.000.00--1.00--------------------------------------------------------------------
.........................TTTTTTTTCATTTTTCAACC.............................................................................................................................................................................................................201.000.00--1.00--------------------------------------------------------------------
..................................................................................................................................................................CCCCTTTTTTTTTTAATTCCAG..................................................................221.000.00--1.00--------------------------------------------------------------------
............TGTGGGCTTTTTTTTCA.............................................................................................................................................................................................................................171.000.00----------------------------------1.00------------------------------------
..............TGGGCTTTTTTTTTTTTTTCGGCC....................................................................................................................................................................................................................241.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................................................GGAGCACAATACTTGGGAACCTGAGAA.......................2711.001.00-------------------------------------------------1.00---------------------
....................................................................................................................................................................CCTTTTTTTTTTAATTATTG..................................................................201.000.00----1.00------------------------------------------------------------------
......TCTTTGTGTGGGCTTTTTTTTTTTTCTCC.......................................................................................................................................................................................................................291.000.00-1.00---------------------------------------------------------------------
.....................................................................TATCTTCTTTAAAGCATTTTA................................................................................................................................................................211.000.00-------1.00---------------------------------------------------------------
....................TTTTTTTTTTTTTCATTTTTGAGC..............................................................................................................................................................................................................241.000.00-1.00---------------------------------------------------------------------
.....................TTTTTTTTTTTTCATTTTTCCTACAG...........................................................................................................................................................................................................261.000.00---1.00-------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTTACG...............................................................................................................................................................................................................251.000.00--1.00--------------------------------------------------------------------
............TGTGGGCTTTTTTTTTTTTTCCTC......................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................ATTTTTCTTACCCAGCG................................................171.000.00--------1.00--------------------------------------------------------------
.....................................................................................................................................................................CTTTTTTTTTTAATTTTCCCATTTTTCTTACCCA...................................................3411.001.00--1.00--------------------------------------------------------------------
..............................................................................................................................ATAAGGCATTGGATTGTGG.........................................................................................................191.000.00------1.00----------------------------------------------------------------
................................................................................................................................................................................................................ATACTTGGGAACCTGAGAAAAA....................2211.001.00--------------------------1.00--------------------------------------------
............TGTGGGCTTTTTTTTTTTTTGGC.......................................................................................................................................................................................................................231.000.00-1.00---------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCTGCC....................................................................................................................................................................................................................241.000.00-1.00---------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTCTCG................................................................................................................................................................................................................241.000.00---1.00-------------------------------------------------------------------
............TGTGGGCTTTTTTTTTTTACCG........................................................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................TGGGAACCTGAGAAAAACTTG................2111.001.00---------------------------1.00-------------------------------------------
....................................................................................................................................................................CCTTTTTTTTTTAATTTTATTG................................................................221.000.00----1.00------------------------------------------------------------------
.........TTGTGTGGGCTTTTTTTTTTTCTTC........................................................................................................................................................................................................................251.000.00-1.00---------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTCCG..................................................................................................................................................................................................................221.000.00---1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................AACCTGAGAAAAACTTGGATTGCCCTGATCT..311.000.00----------------1.00------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCGGT.....................................................................................................................................................................................................................231.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................AACCTGAGAAAAACTTGGATTGCCCTGAGCT..3111.001.00----------------1.00------------------------------------------------------
...........................................................................................................................................................................................................GCACAATACTTGGGAACCTGAGAAAAACTT.................3011.001.00-------------------------1.00---------------------------------------------
...............................................................................................................................................................................................................................AGAAAAACTTGGATTGCCCTGAGCT..2511.001.00-----------------------------------------------------------1.00-----------
.......................................................................................................................................................................................................................................TTGGATTGCCCTGAGC...1611.001.00--------------------1.00--------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCTCGT....................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
............TGTGGGCTTTTTTTTTTCAAC.........................................................................................................................................................................................................................211.000.001.00----------------------------------------------------------------------
............................................................................................................................................................................................................CACAATACTTGGGAACCTGAGAA.......................2311.001.00------------------1.00----------------------------------------------------
...............GGGCTTTTTTTTTTTTTTCATTTTTTTCT..............................................................................................................................................................................................................291.000.00-1.00---------------------------------------------------------------------
............TGTGGGCTTTTTTTTTTTTTTCTG......................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTGAGG................................................................................................................................................................................................................241.000.00-------1.00---------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTCTTG................................................................................................................................................................................................................241.000.00-----1.00-----------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCATTTTTCCTGGGC...........................................................................................................................................................................................................331.000.00-------1.00---------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTTATAA..............................................................................................................................................................................................................261.000.00-----1.00-----------------------------------------------------------------
..........TGTGTGGGCTTTTTTTTTTTTTTTGGC.....................................................................................................................................................................................................................271.000.00-1.00---------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTTCCATTT............................................................................................................................................................................................................281.000.00-------1.00---------------------------------------------------------------
......................................................................................................................................TTGGATTTTTTTCCTCATCATT..............................................................................................221.000.001.00----------------------------------------------------------------------
...........................................................................................................................................................................................TTTTCTTACCCAGGGGAA.............................................181.000.00-------------1.00---------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTATTG................................................................................................................................................................................................................241.000.00-----1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................GGGAACCTGAGAAAAACTTGGATTGC..........2611.001.00---------------------------------------------1.00-------------------------
..................CTTTTTTTTTTTTTTCATTTTTCCTG..............................................................................................................................................................................................................2611.001.00----1.00------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTCCGG......................................................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTAACG................................................................................................................................................................................................................241.000.00--1.00--------------------------------------------------------------------
......TCTTTGTGTGGGCTTTTTTTTTTTCCCC........................................................................................................................................................................................................................281.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................................CCTTTTTTTTTTAATTTTAAAG................................................................221.000.00---1.00-------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCATTGT...................................................................................................................................................................................................................251.000.001.00----------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTCTCG...............................................................................................................................................................................................................251.000.00--1.00--------------------------------------------------------------------
...................................................................................................................................GCATTGGATTTTTTTAAC.....................................................................................................181.000.00-----------------------1.00-----------------------------------------------
........................................................................................................................................................................................................................................TGGATTGCCCTGAGCTA.1711.001.00--------------------------------------1.00--------------------------------
............TGTGGGCTTTTTTTTTTTAACC........................................................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------
.........................TTTTTTTTCATTTTTCCTGTGG...........................................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCAGGTG...................................................................................................................................................................................................................251.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................TGGGAACCTGAGAAAAAC...................1811.001.00------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................GGGAACCTGAGAAAAAC...................1711.001.00-----------------------1.00-----------------------------------------------
........................................................................................................................................................................................................GGAGCACAATACTTGGGAACCTGAGA........................2611.001.00---------------------1.00-------------------------------------------------
................................................................................................................................................................................................................................GAAAAACTTGGATTGATT........181.000.00-----------------------------------------------------1.00-----------------
..............TGGGCTTTTTTTTTTTTTTCTGGC....................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................GGAACCTGAGAAAAACT..................1711.001.00-------------------------------------------------------1.00---------------
..................CTTTTTTTTTTTTTTCATTTCGG.................................................................................................................................................................................................................231.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................CCCTTTTTTTTTTAATTAAAG..................................................................211.000.00----1.00------------------------------------------------------------------
..............TGGGCTTTTTTTTTTTTTTCATTTTCTC................................................................................................................................................................................................................281.000.001.00----------------------------------------------------------------------
...........................................................................................................................................TTTTTTTCCTCATTCTTTGGC..........................................................................................211.000.00-1.00---------------------------------------------------------------------
............................................................................................................................................................................................................CACAATACTTGGGAACCTGA..........................2011.001.00----------------------------1.00------------------------------------------
.....................................................................................................................................................................................................................TGGGAACCTGAGAAAAACTTGGAT.............2411.001.00---------------------1.00-------------------------------------------------
............................................................................................................CCGAATGTCCTCTTTTGG............................................................................................................................181.000.00--------1.00--------------------------------------------------------------
.............................................................................................................................................................................................................................TGAGAAAAACTTGGATTGCCCT.......2211.001.00--------------------------------------------------------------1.00--------
..................CTTTTTTTTTTTTTTCATTTTTCCTTTT............................................................................................................................................................................................................281.000.00----1.00------------------------------------------------------------------
..................CTTTTTTTTTTTTTTCATTTTTTAAG..............................................................................................................................................................................................................261.000.00--1.00--------------------------------------------------------------------
...................................................................................................................................................................CCCTTTTTTTTTTAATTCCAG..................................................................211.000.00---1.00-------------------------------------------------------------------
...............................................................................................................................TAAGGCATTGGATTTTA..........................................................................................................171.000.00--------1.00--------------------------------------------------------------
..........TGTGTGGGCTTTTTTTTTTTTTC.........................................................................................................................................................................................................................231.000.00-1.00---------------------------------------------------------------------
............TGTGGGCTTTTTTTTTTTTTAACC......................................................................................................................................................................................................................241.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................AGAAAAACTTGGATTGCCC........1911.001.00-----------------------------------------------1.00-----------------------
....................................................................................................................................................................CCTTTTTTTTTTAATTTTAAAT................................................................221.000.00-----1.00-----------------------------------------------------------------
............TGTGGGCTTTTTTTTTTACAC.........................................................................................................................................................................................................................211.000.00-1.00---------------------------------------------------------------------
............................................................................................................................................................................................................................CTGAGAAAAACTTGGATTGCCC........2211.001.00---------------------------------------------------------------1.00-------
..............TGGGCTTTTTTTTTTTTTTCTTGG....................................................................................................................................................................................................................241.000.001.00----------------------------------------------------------------------
..........TGTGTGGGCTTTTTTTTCTT............................................................................................................................................................................................................................201.000.00-------------------------------------1.00---------------------------------
....................TTTTTTTTTTTTTCATTTTTCCCTTG............................................................................................................................................................................................................261.000.00--1.00--------------------------------------------------------------------
...........................................................................................................................................................................................TTTTCTTACCCAGGGGAAA............................................191.000.00-------------1.00---------------------------------------------------------
......................................................................................................................................................................................................................GGGAACCTGAGAAAAACT..................1811.001.00---------------------------------1.00-------------------------------------
.............................................................................................................................................TTTTTCCTCATTCTTTCG...........................................................................................181.000.00-------------------------------------------1.00---------------------------
..................CTTTTTTTTTTTTTTCATTTTTTAG...............................................................................................................................................................................................................251.000.00----1.00------------------------------------------------------------------
....................TTTTTTTTTTTTTCATTTTTCCTTAAG...........................................................................................................................................................................................................271.000.00--1.00--------------------------------------------------------------------
...................TTTTTTTTTTTTTTCATTTTTCCGCC.............................................................................................................................................................................................................261.000.00-1.00---------------------------------------------------------------------
................................................................................................................................................................................................................................GAAAAACTTGGATTGCCCTGAGC...2311.001.00-----------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................TGAGAAAAACTTGGATTGC..........1920.500.50----------------------------------------------------------------0.50------
........................................................................................................................................................................................................................................TGGATTGCCCTGAGCT..1640.500.50----------------------------0.25-------------------------------------0.25----
.............................................................................................................................................................................................................................TGAGAAAAACTTGGATTGCTCT.......2220.500.50--------------------------0.50--------------------------------------------
.............................................................................................................................................................................................................ACAATACTTGGGAACCTG...........................1830.330.33-----------------------------------------------------------------0.33-----
..............................................................................................................................................................................................................CAATACTTGGGAACCTGA..........................1830.330.33---------------------------0.33-------------------------------------------
...............................................................................................................................................................................................................AATACTTGGGAACCTGA..........................1740.250.25-------------------------------------------------------------------0.25---
.......................................................................................................................................................................................................................GGAACCTGAGAAAAAC...................1640.250.25-----------0.25-----------------------------------------------------------
.........TTGTGTGGGCTTTTTTTT...............................................................................................................................................................................................................................1840.250.25--------------------------------------------------------------------0.25--
....................................................................................................................................................................................................................TTGGGAACCTGAGAAA......................1640.250.25------0.25----------------------------------------------------------------
......................................................................................................................................................................................CCCATTTTTCTTACCC....................................................1640.250.25---0.25-------------------------------------------------------------------
.............................................................................................................................................................................................................ACAATACTTGGGAAC..............................1550.200.20---------------------------------------------------------------------0.20-
.............GTGGGCTTTTTTTTTTTTTTC........................................................................................................................................................................................................................2160.170.17-0.17---------------------------------------------------------------------

Antisense strand
AATAAGTCTTTGTGTGGGCTTTTTTTTTTTTTTCATTTTTCCTGGGTAGAAATCTAGGATCAAATTTGTTATCTTCTTTAAAGCATAGGGTTTCTCTGTCCTTTTTGTCCGAATGTCCTCTTTGAAATAAGGCATTGGATTTTTTTCCTCATTCTTTACCCCCCCCTTTTTTTTTTAATTTTCCCATTTTTCTTACCCAGGGAGCACAATACTTGGGAACCTGAGAAAAACTTGGATTGCCCTGAGCTAA
...............................................................................................................................(((((....(((......))).....)))))......................(((((..............)))))..............................................
..........................................................................................................................123................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040022(GSM532907)
G575N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040019(GSM532904)
G701T. (cervix)
......................................................................................................................................................ATTCTTTACCCCCCCC.................................................................................... 163.000.00---------3.00-------------------------------------------------------------
....................................................................................................................................................TCATTCTTTACCCCCCTAT................................................................................... 191.000.00-------------------------------1.00---------------------------------------
.......................................TCCTGGGTAGAAATCTT.................................................................................................................................................................................................. 171.000.00---------------------------------------------------1.00-------------------
........................................................................................................................................................AGGGGGGGGTAAAGA................................................................................... 1511.001.00----------------------------------------------------1.00------------------
............................................................................................................................................................TACCCCCCCCTTTTTTTTTTTTA....................................................................... 231.000.00---------------------------------------------------------1.00-------------
.......................................................................................................................................................TTCTTTACCCCCCCCTAA................................................................................. 181.000.00-------------------------------------------------------------1.00---------
...................TTTTTTTTTTTTTTCATTTTTTGAC.............................................................................................................................................................................................................. 251.000.00-----------------------------------------1.00-----------------------------
.....................GGAAAAATGAAAAAAAAAAAA................................................................................................................................................................................................................ 2190.110.11----------------------------------------------------------------------0.11