ID: uc001roy.1_intron_10_0_chr12_46357972_r.5p
GENE: SCAF11(1)
chr12:46385468-46385717-


(1)
AGO1.ip OTHER.mut 		(13)
B-CELL 		(12)
BREAST 		(22)
CELL-LINE 		(5)
CERVIX 		(5)
HEART 		(2)
HELA 		(13)
LIVER 		(4)
OTHER 		(27)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGCGACAGGAAAACGTGTGAGCGCGCGGCTGAAAGCGACTGGGACCTGGGTGAGCCGCGCGCGGGGAGCAGAGCTTAGTCCTGCGGGAGCCGCAAGCAGGACAAGGGCGTGGGTGGGAGGACTGGAAGGTCAGCTGGTAGATGGGGGACACTGAGGGCAGGCAGAGCAACCGGAAGCTTGCTGCAGTCGACGAGAAGAGAAACTAGGAGGTTAAATAATCAGTGACTTTGAAAAAGTCAAAATACCTCC
............................................................................................................((...((((.(((.((((...(((.(((..(((.((.....)))))..))).))).......))))...))).))))...))............................................................
............................................................................................................109................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040017(GSM532902)
G645T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR343336SRR343337SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.................................................................................................................GTGGGAGGACTGGAAGGT.......................................................................................................................1816.006.00-3.00----------1.00-----------1.00---------------------------------------------1.00----------------------------------
.........................................................................................................................................................................ACCGGAAGCTTGCTGCAGT..............................................................1915.005.00-----2.00------------2.00--------------1.00-----------------------------------------------------------------------
....................AGCGCGCGGCTGAAAGCGACTG................................................................................................................................................................................................................2214.004.00---------------2.00---------------2.00-------------------------------------------------------------------------
...................................................................................................................................CAGCTGGTAGATGGGGGA.....................................................................................................1814.004.00---4.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................CGACGAGAAGAGAAACTAGGAGGTTA....................................2614.004.00---4.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................CAGTCGACGAGAAGAGAAACTAGGAGGTTAAATA................................3414.004.00--4.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTAGGAGGTT.....................................2713.003.003.00--------------------------------------------------------------------------------------------------------
...................................GCGACTGGGACCTGGGTGAGCCGCGC.............................................................................................................................................................................................2613.003.00-------2.00---------------------------------------1.00---------------------------------------------------------
......CAGGAAAACGTGTGAGCG..................................................................................................................................................................................................................................1812.002.00---1.00--1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTA............................................2012.002.00-----------------------1.00---------------------------1.00-----------------------------------------------------
.....................................................................................................................................................................................CTGCAGTCGACGAGAAGAGAAA...............................................2212.002.00--------------2.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTAGGAGGT......................................2612.002.001.00-----------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................CAGTCGACGAGAAGAGAAACTAGG..........................................2412.002.002.00--------------------------------------------------------------------------------------------------------
.........................................................................................GCCGCAAGCAGGACAAGGGCG............................................................................................................................................2112.002.00----1.00-----------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................GCTGCAGTCGACGAGAAGA...................................................1912.002.00---------------------------------------------------------1.00---------------------------------------1.00-------
.....................................................................................................................................................CACTGAGGGCAGGCAGAG...................................................................................1812.002.00----------2.00----------------------------------------------------------------------------------------------
...........................................................................................................GCGTGGGTGGGAGGACTGGAAGGTC......................................................................................................................2512.002.00-----------------2.00---------------------------------------------------------------------------------------
...................................GCGACTGGGACCTGGGTGA....................................................................................................................................................................................................1912.002.00-------------------1.00------------------------------------------------1.00------------------------------------
.........................................................................................................................................GTAGATGGGGGACACTGAG..............................................................................................1912.002.002.00--------------------------------------------------------------------------------------------------------
.........................GCGGCTGAAAGCGACTGGGA.............................................................................................................................................................................................................2012.002.00-1.00--------------1.00----------------------------------------------------------------------------------------
......CAGGAAAACGTGTGAGCGCGC...............................................................................................................................................................................................................................2111.001.00--------------------1.00------------------------------------------------------------------------------------
.............................CTGAAAGCGACTGGGAC............................................................................................................................................................................................................1711.001.00-------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................GAGGGCAGGCAGAGCAAC...............................................................................1811.001.00----1.00----------------------------------------------------------------------------------------------------
..................................................................................................................TGGGAGGACTGGAAGGT.......................................................................................................................1711.001.00--1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAAC..............................................1811.001.00------------------------------------------1.00--------------------------------------------------------------
.................................................................................................................................................GGGACACTGAGGGCAGGC.......................................................................................1811.001.00----1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................ACTGGAAGGTCAGCTGGTAGATTG.........................................................................................................241.000.00-----------------------------------------------------------------1.00---------------------------------------
....GACAGGAAAACGTGTGAGCGCGCGGCT...........................................................................................................................................................................................................................2711.001.00-------------------------1.00-------------------------------------------------------------------------------
..............................................................................................AAGCAGGACAAGGGCGTG..........................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------------
.......................GCGCGGCTGAAAGCGACTGGG..............................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------------
..........................CGGCTGAAAGCGACTGGGA.............................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00--------------------------------------------------
...........................................................................................................GCGTGGGTGGGAGGACTG.............................................................................................................................1811.001.00-------1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGTCGACGAGAAGAGAAACTAGG..........................................2511.001.00-----------------------------1.00---------------------------------------------------------------------------
............................................................................................................................................................................................CGACGAGAAGAGAAACTAGGAGG.......................................2311.001.00-------------------------------------------------------------------1.00-------------------------------------
...CGACAGGAAAACGTGTG......................................................................................................................................................................................................................................1711.001.00-------------------------1.00-------------------------------------------------------------------------------
............................................................................................................................................................................................CGACGAGAAGAGAAACTA............................................1811.001.00-----------------------------------------------------------------------1.00---------------------------------
..............................................................................................AAGCAGGACAAGGGCGTGGG........................................................................................................................................2011.001.00---------------------------------1.00-----------------------------------------------------------------------
..............................................................................................AAGCAGGACAAGGGCGT...........................................................................................................................................1711.001.00---------1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CGAGAAGAGAAACTAGGA.........................................1811.001.00-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................AGGGCAGGCAGAGCACCC..............................................................................181.000.00------------------------------------------------------------------1.00--------------------------------------
.............................................................................................................GTGGGTGGGAGGACTGGAAGGTAA.....................................................................................................................241.000.00-----------------------------1.00---------------------------------------------------------------------------
............................................................................................................................................................................................CGACGAGAAGAGAAACTAGG..........................................2011.001.00---------1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................CGGAAGCTTGCTGCAGTCGACGAGA......................................................2511.001.00------------------------------------------------------------------------------------------1.00--------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTAGGAGGTTAAATA................................3211.001.00----------------------------------1.00----------------------------------------------------------------------
............................................................................................................CGTGGGTGGGAGGACTGGAAGGTC......................................................................................................................2411.001.00---------------------------1.00-----------------------------------------------------------------------------
.............................................................................................................................................................................................................AGGAGGTTAAATAATCAG...........................1811.001.00---------------------------------------------------------------------------------1.00-----------------------
.....................................................................................................................................................................................CTGCAGTCGACGAGAAGAGAA................................................2111.001.00------1.00--------------------------------------------------------------------------------------------------
..........................CGGCTGAAAGCGACTG................................................................................................................................................................................................................1611.001.00----------------------------------------1.00----------------------------------------------------------------
.......AGGAAAACGTGTGAGCG..................................................................................................................................................................................................................................1711.001.00------------------------------------------------1.00--------------------------------------------------------
........................................................................................................................................................................................CAGTCGACGAGAAGAAAA................................................181.000.00-----------------------------------1.00---------------------------------------------------------------------
.......AGGAAAACGTGTGAGCGC.................................................................................................................................................................................................................................1811.001.00--------------------------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................................CGAGAAGAGAAACTAGGAGGTTAAAT.................................2611.001.00------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................GTGGGAGGACTGGAAGGTC......................................................................................................................1911.001.00---------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTGCAGTCGACGAGG......................................................171.000.00-----------1.00---------------------------------------------------------------------------------------------
....................................CGACTGGGACCTGGGTGAG...................................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00---------------------------------------------------
....GACAGGAAAACGTGTGAGCG..................................................................................................................................................................................................................................2011.001.00-----------------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTGCAGTCGACGATC......................................................171.000.00----------------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGTCGACGAGAAGAGAAA...............................................2011.001.00-------------------------------------------------------1.00-------------------------------------------------
..................................................................................................................................TCAGCTGGTAGATGGTA.......................................................................................................171.000.00----------------------------1.00----------------------------------------------------------------------------
.........................................GGGACCTGGGTGAGCCGCGCG............................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------1.00---------------------
.......................................................................................................................................................................................GCAGTCGACGAGAAGAGA.................................................1811.001.00-------------------------------------------------------------------------------------1.00-------------------
.......................................................................................................................................................CTGAGGGCAGGCAGAGCAACCG.............................................................................2211.001.00----------------------------------------------------------------------------------------------1.00----------
........................................................................................................AGGGCGTGGGTGGGAGGA................................................................................................................................1811.001.00------------------------------1.00--------------------------------------------------------------------------
......................................................................................................................................................................................TGCAGTCGACGAGAAGAGAAA...............................................2111.001.00----------------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTAGGAAAAA.....................................271.000.001.00--------------------------------------------------------------------------------------------------------
......................................................................................................................................................................GCAACCGGAAGCTTGCTGCAGTCGA...........................................................2511.001.00--------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................AGTCGACGAGAAGAGAAA...............................................1811.001.00------------------------------------------------------------------------------1.00--------------------------
.......................................................................................GAGCCGCAAGCAGGACAAGGG..............................................................................................................................................2111.001.00-----------------------------------------1.00---------------------------------------------------------------
...................................GCGACTGGGACCTGGGAAAC...................................................................................................................................................................................................201.000.00----------------------------------------------------1.00----------------------------------------------------
................................................................................................GCAGGACAAGGGCGTGGGTGG.....................................................................................................................................2111.001.00---------------------------------------------------------------------------------------------1.00-----------
..................................................................................................AGGACAAGGGCGTGGGTGGGA...................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00------------
..........................................................................................................................................TAGATGGGGGACACTGAG..............................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------------
............................................................................................................................GGAAGGTCAGCTGGTAGATGGG........................................................................................................2211.001.00----------------------------------------------------------------------------------------------------1.00----
......................................ACTGGGACCTGGGTGAGCC.................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00-------------------------
.............................................................................AGTCCTGCGGGAGCCGCA...........................................................................................................................................................1811.001.00--------------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................GTAGATGGGGGACACTGA...............................................................................................1811.001.00-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................ATCAGTGACTTTGAAAAAGT............2011.001.00-1.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGGTAGATGGGGGACACTGA...............................................................................................2111.001.00--------1.00------------------------------------------------------------------------------------------------
..............................TGAAAGCGACTGGGACCTG.........................................................................................................................................................................................................1911.001.00--------------------------1.00------------------------------------------------------------------------------
...........................................................................................................................................................................CGGAAGCTTGCTGCAGTCGACGA........................................................2311.001.00------------------------------------------------------------------------------------------------1.00--------
....................................................................................................................................................................................GCTGCAGTCGACGAGAAGAGAAA...............................................2311.001.00-------------------1.00-------------------------------------------------------------------------------------
.........................................................................................GCCGCAAGCAGGACAAGGGCGT...........................................................................................................................................2211.001.00---------------------------------------1.00-----------------------------------------------------------------
...............GTGTGAGCGCGCGGCTGAAAGCGACTGGGA.............................................................................................................................................................................................................3011.001.00----------------------1.00----------------------------------------------------------------------------------
...................................GCGACTGGGACCTGGGTGAG...................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------------------------------1.00-----
.......................................................................................................AAGGGCGTGGGTGGGAGGACTGGAAGG........................................................................................................................2711.001.00--------------------------------------------------------------------------1.00------------------------------
.......................................................................................................................GGACTGGAAGGTCAGC...................................................................................................................1611.001.00--1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTGCTGCAGTCGACGAGAAGA...................................................2111.001.00-1.00-------------------------------------------------------------------------------------------------------
..................................AGCGACTGGGACCTGGGTGAGCC.................................................................................................................................................................................................2311.001.00---------1.00-----------------------------------------------------------------------------------------------
.......................................................CCGCGCGCGGGGAGCAGCG................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------1.00-------------
........................................................................................................AGGGCGTGGGTGGGAGGAA...............................................................................................................................1911.001.00-------------------------------------------1.00-------------------------------------------------------------
............................................................................................GCAAGCAGGACAAGGGCGTG..........................................................................................................................................2011.001.00--------------------------------------------------------------------------------------1.00------------------
.............................................................................................................................................................................................GACGAGAAGAGAAACTAGGAG........................................2111.001.00----1.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................CAGAGCAACCGGAAGCTTG.....................................................................1911.001.00------1.00--------------------------------------------------------------------------------------------------
....................................CGACTGGGACCTGGGTGAGC..................................................................................................................................................................................................2011.001.00------------------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................GCTGCAGTCGACGAGAAGAGAA................................................2211.001.00---------------------------------------------------------------------1.00-----------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAACTAGG..........................................2211.001.00---------------------------------------------------------------------------1.00-----------------------------
................................................................................................GCAGGACAAGGGCGTGGG........................................................................................................................................1811.001.00-----------------------------------------------------------1.00---------------------------------------------
.......................................................................................................................................TGGTAGATGGGGGACACTGAG..............................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------------
.....................GCGCGCGGCTGAAAGCGACTGGGACC...........................................................................................................................................................................................................2611.001.00---------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................GTGGGAGGACTGGAAGGTCAGCT..................................................................................................................2311.001.00-1.00-------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CTGCAGTCGACGAGAAGAG..................................................1911.001.00----------------------------------------------------------1.00----------------------------------------------
.....................................................................................................................................GCTGGTAGATGGGGGACACTG................................................................................................2111.001.00-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................CTGGAAGGTCAGCTGGTAGAT...........................................................................................................2111.001.00-------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................CAGTCGACGAGAAGAGAAACTAGGAGGTTAAATAAT..............................3611.001.00--------------------------------1.00------------------------------------------------------------------------
................TGTGAGCGCGCGGCTGAAAG......................................................................................................................................................................................................................2011.001.00----------------------------------------------1.00----------------------------------------------------------
..............................................................................................AAGCAGGACAAGGGCGTGG.........................................................................................................................................1911.001.00----------------------------------------------------------------------------1.00----------------------------
................................................................................................................................................................................................GAGAAGAGAAACTAGGAGGTTA....................................2211.001.00-----------------------------------------------------------------------------------------1.00---------------
.............................................................GCGGGGAGCAGAGCTTAGTCCTGCGGGAGCCGC............................................................................................................................................................3311.001.00--------------------------------------------------1.00------------------------------------------------------
.......AGGAAAACGTGTGAGCGCG................................................................................................................................................................................................................................1911.001.00-----1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGACGAGAAGAGAAA...............................................1711.001.00-------------------------------------------------------------1.00-------------------------------------------
...................................GCGACTGGGACCTGGGTG.....................................................................................................................................................................................................1811.001.00----------1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................AGCTTGCTGCAGTCGACGAGA......................................................2111.001.00----------------------1.00----------------------------------------------------------------------------------
.......AGGAAAACGTGTGAGCGCGCGGCT...........................................................................................................................................................................................................................2411.001.00--------------1.00------------------------------------------------------------------------------------------
..................................................................................................................TGGGAGGACTGGAAGGTC......................................................................................................................1811.001.00--------------------------------------------------------1.00------------------------------------------------
...................................................................................................................GGGAGGACTGGAAGGT.......................................................................................................................1620.500.50--0.50------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................AAGAGAAACTAGGAGGTT.....................................1820.500.50-----------------------------------------------------------------------------------------------------0.50---
..................................................................................................................................................................................................GAAGAGAAACTAGGAGGT......................................1820.500.50-------------------------------------0.50-------------------------------------------------------------------
.....................................................................................GGGAGCCGCAAGCAG......................................................................................................................................................1550.400.40------------------------------------------------------------------------------------------------------0.200.20-
.............................................................................................................................................................................................GACGAGAAGAGAAAC..............................................1570.140.14----------------------------------------0.14----------------------------------------------------------------

Antisense strand
AGGCGACAGGAAAACGTGTGAGCGCGCGGCTGAAAGCGACTGGGACCTGGGTGAGCCGCGCGCGGGGAGCAGAGCTTAGTCCTGCGGGAGCCGCAAGCAGGACAAGGGCGTGGGTGGGAGGACTGGAAGGTCAGCTGGTAGATGGGGGACACTGAGGGCAGGCAGAGCAACCGGAAGCTTGCTGCAGTCGACGAGAAGAGAAACTAGGAGGTTAAATAATCAGTGACTTTGAAAAAGTCAAAATACCTCC
............................................................................................................((...((((.(((.((((...(((.(((..(((.((.....)))))..))).))).......))))...))).))))...))............................................................
............................................................................................................109................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040017(GSM532902)
G645T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040025(GSM532910)
G613T. (cervix)		SRR343336SRR343337SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.....................................................................CCCGCAGGACTAAGCTCTG.................................................................................................................................................................. 1913.003.00--1.00-----------------------1.00--------------------------------------------------------------------1.00---------
................................................................CAGGACTAAGCTCTGCTCCC...................................................................................................................................................................... 2012.002.002.00--------------------------------------------------------------------------------------------------------
.......................................................................TCCCGCAGGACTAAGCTC................................................................................................................................................................. 1812.002.00--2.00------------------------------------------------------------------------------------------------------
.......................................................................CCCGCAGGACTAAGCTC.................................................................................................................................................................. 1712.002.00--1.00---------1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTAGTTTCTCTTCTCGTCGACTGC........................................... 2412.002.00--------2.00------------------------------------------------------------------------------------------------
....................................................................CGCAGGACTAAGCTCTGC.................................................................................................................................................................... 1812.002.00------------------------------------2.00--------------------------------------------------------------------
........................AGTCGCTTTCAGCCGCG................................................................................................................................................................................................................. 1711.001.00-------------------------------------------------------------------------1.00-------------------------------
.............................................................................GCGGCTCCCGCAGGACT............................................................................................................................................................ 1711.001.00---------------------------------------------1.00-----------------------------------------------------------
.........................................................................................................GGGCGTGGGTGGGAGGACGC............................................................................................................................. 201.000.00--------------------------------------------------------------------------------------------------1.00------
.........................................................................................................GGGCGTGGGTGGGAGCGC............................................................................................................................... 181.000.00--------------------------------------------------------------1.00------------------------------------------
.............................................................................................................................................................GCTTCCGGTTGCTCTGCCTGC........................................................................ 2111.001.00----------------------------------------------------------------1.00----------------------------------------
............................................................................................................................................................................TTCTCGTCGACTGCAGCAAGCTTCC..................................................... 2511.001.00-------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................CTGCCTGCCCTCAGTGTCCC..................................................................................... 2011.001.00-1.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TAGTTTCTCTTCTCGTCGACTGCAGC............................................ 2611.001.00-------------1.00-------------------------------------------------------------------------------------------
...................................................................CCCGCAGGACTAAGCTCTGCT.................................................................................................................................................................. 2111.001.00------------------------------------------------------------1.00--------------------------------------------
......................................................................CTCCCGCAGGACTAAGCTCT................................................................................................................................................................ 2011.001.00-----------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TCCTAGTTTCTCTTCTCGTC......................................... 2011.001.00--------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTTCTCTTCTCGTCGACTGC............................................... 2011.001.00------------------------------------------------------------------------------------1.00--------------------
..............................................................CAGGACTAAGCTCTGCTCCCCG...................................................................................................................................................................... 2211.001.00---------------------------------------------------------------1.00-----------------------------------------
.CACACGTTTTCCTGTCGCC...................................................................................................................................................................................................................................... 1911.001.00-----------------------------------1.00---------------------------------------------------------------------
................................................................................................................................................................................CTCTTCTCGTCGACTGCAGCAAGC.................................................. 2411.001.00-------------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AGGAGGTTAAATAATGCAT.......................... 191.000.00--------------------------------------------1.00------------------------------------------------------------
......................................................................................CCTTGTCCTGCTTGCGGCTCC............................................................................................................................................... 2111.001.001.00--------------------------------------------------------------------------------------------------------
........................CAGTCGCTTTCAGCCGCG................................................................................................................................................................................................................ 1811.001.00----1.00----------------------------------------------------------------------------------------------------
....................................................................CCCGCAGGACTAAGCTCTGC.................................................................................................................................................................. 2011.001.00-1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................GTCGACTGCAGCAAGCTTCCGG.......................................................... 2211.001.00----1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TCTCGTCGACTGCAGCAAG...................................................... 1911.001.00----1.00----------------------------------------------------------------------------------------------------
..................................................................................................................ACCTTCCAGTCCTCCCA....................................................................................................................... 1711.001.00-----------------------------------------------------------------------------1.00---------------------------
....................................................................CCGCAGGACTAAGCTCTGC................................................................................................................................................................... 1911.001.00-------------------------------------------------1.00-------------------------------------------------------
.........................................................................................................GGGCGTGGGTGGGAGGAC............................................................................................................................... 181.000.00---------------------------------------------------------------------------------------1.00-----------------
................................................................................TTGCGGCTCCCGCAGG.......................................................................................................................................................... 1611.001.00---------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................TCCTCCCACCCACGCCC................................................................................................................................ 1711.001.00----------------------------------------------------------------------------------1.00----------------------
.........................................................................................................GGGCGTGGGTGGGAGGCGC.............................................................................................................................. 190.330.00---------------------------------------0.17----------------------------------------------------------------0.17
.........................................................................................................CCTCCCACCCACGCCC................................................................................................................................. 1660.170.17--------------------------------------0.17------------------------------------------------------------------