ID: uc001rjr.1_intron_15_0_chr12_31249680_f
GENE: DDX11(16)
chr12:31249630-31249842+


(1)
AGO2.ip 		(1)
B-CELL 		(11)
BRAIN 		(12)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(4)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(3)
UTERUS

Sense strand
GGCTGGGTTTCAGCAATTCCTGCAGAGCCTGCAGCCCAGGACGACTGAAGGTGAGGCAGGAGGGTGGGCAGGCAGAGCCGGCTGCACGCATGGGCAAGGACTTCTGTTCCTCATGTGTGGACCTGACCAGAGGGAGGCCTCCTCCCCGTTCTGCTCTGTGCAGCTCTTGCAGCCCCTGCAGACGAGAGTCAGGCCAGCACCCTGCGACCAGCT
......................................................((((((..(((.(((.......))).))).((((((((((...((((....))))))))))))))..)))).)).....................................................................................
..................................................51...........................................................................128...................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...................................................TGAGGCAGGAGGGTGTATA...............................................................................................................................................1937.000.003.001.003.005.002.002.002.001.001.00-2.00--3.00---1.00-1.00-1.00-1.00-2.00-----1.00-1.00-1.001.00-1.00-----1.00------------
...................................................TGAGGCAGGAGGGTGGATAG..............................................................................................................................................2027.000.009.003.001.00-1.002.001.001.001.00--1.001.00--1.00------2.00----------------1.00------1.001.00---------
........................GAGCCTGCAGCCCAGGACGAC........................................................................................................................................................................2134.004.00--------------3.00------------------------------1.00-----------
...................................................TGAGGCAGGAGGGTGGGTGGT.............................................................................................................................................214.000.003.00------1.00-------------------------------------------------
...........AGCAATTCCTGCAGAGCCTGCT....................................................................................................................................................................................223.000.00---------3.00-----------------------------------------------
...................................................TGAGGCAGGAGGGTGGATA...............................................................................................................................................193.000.00------1.00---1.00-------------------1.00--------------------------
...................................................TGAGGCAGGAGGGTGGGAGGT.............................................................................................................................................213.000.003.00--------------------------------------------------------
...................................................TGAGGCAGGAGGGTGTGTA...............................................................................................................................................192.000.00-------------------------------------1.00---1.00---------------
...................................................TGAGGCAGGAGGGTGGGTAGT.............................................................................................................................................212.000.00------------------------1.00------------------1.00-------------
...................................................TGAGGCAGGAGGGTGTAC................................................................................................................................................182.000.00----------------------------------------1.00-1.00--------------
...................................................TGAGGCAGGAGGGTGTGAG...............................................................................................................................................192.000.002.00--------------------------------------------------------
...................................................TGAGGCAGGAGGGTGGAAAG..............................................................................................................................................202.000.001.00----1.00---------------------------------------------------
...................................................TGAGGCAGGAGGGTGGATGT..............................................................................................................................................201.000.00--------------------1.00------------------------------------
...............................................................GTGGGCAGGCAGAGCCGGCTGCACGCATGGGC......................................................................................................................3211.001.00--------------------------------1.00------------------------
............................................................AGGGTGGGCAGGCAGAGCTCG....................................................................................................................................211.000.00--------------------------1.00------------------------------
...................................................TGAGGCAGGAGGGTGGTTGG..............................................................................................................................................201.000.00-1.00-------------------------------------------------------
...................................................TGAGGCAGGAGGGTGGGGTT..............................................................................................................................................201.000.00-----------1.00---------------------------------------------
...................................................TGAGGCAGGAGGGTGTGGT...............................................................................................................................................191.000.00-------------------1.00-------------------------------------
.......................................................GCAGGAGGGTGGGCAGGCAGAGCCGGCTGCAC..............................................................................................................................3211.001.00----------------------------1.00----------------------------
...................................................TGAGGCAGGAGGGTGTAG................................................................................................................................................181.000.00--------------------1.00------------------------------------
...................................................TGAGGCAGGAGGGTGGGCGGCT............................................................................................................................................221.000.00----------------------------------1.00----------------------
...................................................TGAGGCAGGAGGGTGGGTAG..............................................................................................................................................201.000.00-----------1.00---------------------------------------------
...................................................TGAGGCAGGAGGGTGGGCGTCT............................................................................................................................................221.000.00----------------1.00----------------------------------------
...................................................TGAGGCAGGAGGGTGGATAC..............................................................................................................................................201.000.00----1.00----------------------------------------------------
...................................................TGAGGCAGGAGGGTGTATT...............................................................................................................................................191.000.00----1.00----------------------------------------------------
...................................................TGAGGCAGGAGGGTGGGTGGC.............................................................................................................................................211.000.001.00--------------------------------------------------------
...................................................TGAGGCAGGAGGGTGGGTGC..............................................................................................................................................201.000.00---------------------------1.00-----------------------------
...................................................TGAGGCAGGAGGGTGGGAAGA.............................................................................................................................................211.000.00------1.00--------------------------------------------------
...................................................TGAGGCAGGAGGGTGGATCC..............................................................................................................................................201.000.00------------1.00--------------------------------------------
...................................................TGAGGCAGGAGGGTGTAAA...............................................................................................................................................191.000.00--------1.00------------------------------------------------
...........................................................................................................................................................................GCCCCTGCAGACGAGTGC........................181.000.00--------1.00------------------------------------------------
...................................................TGAGGCAGGAGGGTGGGTGGG.............................................................................................................................................211.000.00-----------------------1.00---------------------------------
...................................................TGAGGCAGGAGGGTGGACCG..............................................................................................................................................201.000.00------------1.00--------------------------------------------
...................................................TGAGGCAGGAGGGTGTGTC...............................................................................................................................................191.000.00------------------1.00--------------------------------------
...................................................TGAGGCAGGAGGGTGGGAAG..............................................................................................................................................201.000.00---------------------1.00-----------------------------------
...................................................TGAGGCAGGAGGGTGGGAGA..............................................................................................................................................201.000.001.00--------------------------------------------------------
..................................................................................................................................................................................................CAGCACCCTGCGACCATTG191.000.00----------------1.00----------------------------------------
...................................................TGAGGCAGGAGGGTGTAA................................................................................................................................................181.000.00-----------------1.00---------------------------------------
...................................................TGAGGCAGGAGGGTGTACA...............................................................................................................................................191.000.001.00--------------------------------------------------------
....................................................GAGGCAGGAGGGTGGGGGGT.............................................................................................................................................201.000.00------------------------------------------------1.00--------
...................................................TGAGGCAGGAGGGTGTTTT...............................................................................................................................................191.000.00---------------1.00-----------------------------------------
...................................................TGAGGCAGGAGGGTGGATAA..............................................................................................................................................201.000.001.00--------------------------------------------------------
...................................................TGAGGCAGGAGGGTGTTT................................................................................................................................................181.000.00------------------------1.00--------------------------------
...................................................TGAGGCAGGAGGGTGTAGA...............................................................................................................................................191.000.00-------1.00-------------------------------------------------
...................................................TGAGGCAGGAGGGTGGGGGGT.............................................................................................................................................211.000.00---------------1.00-----------------------------------------
...................................................TGAGGCAGGAGGGTGGGTAGG.............................................................................................................................................211.000.00------------------1.00--------------------------------------
..................................CCCAGGACGACTGAAG...................................................................................................................................................................1630.670.67--------------------------------------------------0.33--0.33---
........................................................................CAGAGCCGGCTGCACGCATGG........................................................................................................................2120.500.50-------------------------------------------------0.50-------
...................CTGCAGAGCCTGCAGCCCAGGA............................................................................................................................................................................2230.330.33------------------------------------------------------0.33--
....................................................................................................CTTCTGTTCCTCATGTGTGGACCTG........................................................................................2530.330.33---------------------------------------------------0.33-----
...............ATTCCTGCAGAGCCTGCAGCCCAG..............................................................................................................................................................................2430.330.33--------------------------0.33------------------------------

Antisense strand
GGCTGGGTTTCAGCAATTCCTGCAGAGCCTGCAGCCCAGGACGACTGAAGGTGAGGCAGGAGGGTGGGCAGGCAGAGCCGGCTGCACGCATGGGCAAGGACTTCTGTTCCTCATGTGTGGACCTGACCAGAGGGAGGCCTCCTCCCCGTTCTGCTCTGTGCAGCTCTTGCAGCCCCTGCAGACGAGAGTCAGGCCAGCACCCTGCGACCAGCT
......................................................((((((..(((.(((.......))).))).((((((((((...((((....))))))))))))))..)))).)).....................................................................................
..................................................51...........................................................................128...................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................CAGAGCAGAACGGGGAGGAGGC....................................................... 2211.001.00-----------------------------1.00---------------------------
....................................................................CAGGCAGAGCCGGCTTGTG.............................................................................................................................. 191.000.00--1.00------------------------------------------------------
............................................ACCCTCCTGCCTCACCTTCAG.................................................................................................................................................... 2130.330.33----------------------------------------------------0.33----
......AGGAATTGCTGAAAC................................................................................................................................................................................................ 1570.290.29-------------------------------------------------------0.140.14