ID: uc001oyz.1_intron_12_0_chr11_77838483_r.5p
GENE: ALG8(1)
chr11:77850340-77850589-


(3)
B-CELL
(2)
BRAIN
(14)
CELL-LINE
(5)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(14)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCTTTGGCGCTCGGGGTGACTCTTCTCAAATGCCTTCTCATCCCCACATAGTAAGGGACTCGCACGGCCAGGGGCTGGGCGGGGAGGCCCCGCGGTCGGTCAGGGCGGGAGAGAAAGGTGTGGATATCCCTGGGTATGAAGAGAAAACTTTAGGTCGTGTTTGTCGCTATCCTGCCTTTGCTAAGCTTTCTGTTTCGCCAGTTGTTACTTGACTTAGCCCCAGCTGGCTAGGTTCAGACCTGGCGCTGTC
........................................................((((.((.(((((...))))).((((((...)))))).)).)))).....................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
..................................................................................GGAGGCCCCGCGGTCGCGC.....................................................................................................................................................1917.003.002.003.00---1.00--------1.00-------------------------------
.................................................................................GGGAGGCCCCGCGGTC.........................................................................................................................................................1615.005.003.002.00--------------------------------------------
.................................................................................GGGAGGCCCCGCGGTCGCGC.....................................................................................................................................................2015.003.002.001.00---1.00--1.00-------------------------------------
..................................................................................GGAGGCCCCGCGGTCGC.......................................................................................................................................................1714.003.001.00----1.00--1.00-----------------------------1.00-------
.................................................................................GGGAGGCCCCGCGGTCGC.......................................................................................................................................................1814.003.002.00-------------1.001.00------------------------------
.................................................................................GGGAGGCCCCGCGGTCGCG......................................................................................................................................................1913.003.003.00---------------------------------------------
.....................................................................AGGGGCTGGGCGGGGAGGCC.................................................................................................................................................................2013.003.00----------3.00-----------------------------------
..................................................................................GGAGGCCCCGCGGTCG........................................................................................................................................................1613.003.001.002.00--------------------------------------------
.................................................................................GGGAGGCCCCGCGGTCG........................................................................................................................................................1713.003.001.00----1.00------------------------------1.00---------
...................................................................................GAGGCCCCGCGGTCGCGC.....................................................................................................................................................1832.670.330.671.33------0.33------0.33------------------------------
..................................................................................GGAGGCCCCGCGGTC.........................................................................................................................................................1522.502.500.502.00--------------------------------------------
..................................................................................GGAGGCCCCGCGGTCGCGCG....................................................................................................................................................2012.003.00-1.00-------------------------------1.00------------
...........CGGGGTGACTCTTCTCAAATGC.........................................................................................................................................................................................................................2212.002.00-----------2.00----------------------------------
...................................................................................GAGGCCCCGCGGTCGCGCG....................................................................................................................................................1931.330.33-1.00-----------------------------------------0.33--
.....................................................AGGGACTCGCACGGCCAGGAA................................................................................................................................................................................211.000.00-------------1.00--------------------------------
.....................................................................................................................................GTATGAAGAGAAAACAAAC..................................................................................................191.000.00--------------------------1.00-------------------
.................................................................................................................................................................................................TTCGCCAGTTGTTACTTGACTTAGC................................2511.001.00------1.00---------------------------------------
..............................................................................GCGGGGAGGCCCCGCGGTCGGTCAGGGCGGG.............................................................................................................................................3111.001.00-------------------------------------1.00--------
..................................................................................................................................................................................................TCGCCAGTTGTTACTTGACTTAGC................................2411.001.00------1.00---------------------------------------
............................................CACATAGTAAGGGACTCGCAC.........................................................................................................................................................................................2111.001.00--------1.00-------------------------------------
.........................................CCCCACATAGTAAGGGACTCG............................................................................................................................................................................................2111.001.00-------------------1.00--------------------------
.....................................................................AGGGGCTGGGCGGGG......................................................................................................................................................................1501.001.00-----------------------1.00----------------------
.................................................................................................................................................AACTTTAGGTCGTGTTTGTC.....................................................................................2011.001.00---------1.00------------------------------------
...............................................................ACGGCCAGGGGCTGGGC..........................................................................................................................................................................1711.001.00---------1.00------------------------------------
..........................................................CTCGCACGGCCAGGGGCTGGGC..........................................................................................................................................................................2211.001.00-----------------1.00----------------------------
........................................................................................CCCGCGGTCGGTCAGGG.................................................................................................................................................1711.001.00---------1.00------------------------------------
....TGGCGCTCGGGGTGACTCTCTC................................................................................................................................................................................................................................221.000.00--------------------------------1.00-------------
..................................................................................................................................................ACTTTAGGTCGTGTTTGTCGCT..................................................................................2211.001.00------------------1.00---------------------------
............................................CACATAGTAAGGGACTCGCACG........................................................................................................................................................................................2211.001.00-------------1.00--------------------------------
..............................................................................GCGGGGAGGCCCCGCGGTCGGT......................................................................................................................................................2211.001.00---------------------------1.00------------------
........GCTCGGGGTGACTCTTCTCAA.............................................................................................................................................................................................................................2111.001.00-------------------------1.00--------------------
....................................................AAGGGACTCGCACGGCCAGG..................................................................................................................................................................................2011.001.00------1.00---------------------------------------
.....................................................................................................AGGGCGGGAGAGAAAGGTTATC...............................................................................................................................221.000.00--------------------1.00-------------------------
.................................................................................................................................................................................................TTCGCCAGTTGTTACTTGACTCAGC................................251.000.00-----------------------------------1.00----------
....................................CTCATCCCCACATAGTCCTG..................................................................................................................................................................................................201.000.00------------------------------------------1.00---
......GCGCTCGGGGTGACTCTTCTCAAA............................................................................................................................................................................................................................2411.001.00------1.00---------------------------------------
..........................................................................CTGGGCGGGGAGGCCAAT..............................................................................................................................................................181.000.00-----------------------------1.00----------------
...........................................................................................................................................AGAGAAAACTTTAGGTCGTGTTT........................................................................................2311.001.00-----------1.00----------------------------------
............................................................................GGGCGGGGAGGCCCCGCGCG..........................................................................................................................................................201.000.00--1.00-------------------------------------------
...TTGGCGCTCGGGGTGACTCTCTC................................................................................................................................................................................................................................231.000.00-------------------------------1.00--------------
...........................................................................................................GGAGAGAAAGGTGTGGAT.............................................................................................................................1811.001.00------------1.00---------------------------------
...........................................................................................................GGAGAGAAAGGTGTGAGT.............................................................................................................................181.000.00----1.00-----------------------------------------
...................................................................................GAGGCCCCGCGGTCGCG......................................................................................................................................................1730.670.33-0.67--------------------------------------------
...................................................................................GAGGCCCCGCGGTCG........................................................................................................................................................1530.330.33-0.33--------------------------------------------
............................................................................................................GAGAGAAAGGTGTGGAT.............................................................................................................................1730.330.33--------------------------------------------0.33-
.......................................................................................................GGCGGGAGAGAAAGG....................................................................................................................................1590.110.11---------------------------------------------0.11

Antisense strand
GCTTTGGCGCTCGGGGTGACTCTTCTCAAATGCCTTCTCATCCCCACATAGTAAGGGACTCGCACGGCCAGGGGCTGGGCGGGGAGGCCCCGCGGTCGGTCAGGGCGGGAGAGAAAGGTGTGGATATCCCTGGGTATGAAGAGAAAACTTTAGGTCGTGTTTGTCGCTATCCTGCCTTTGCTAAGCTTTCTGTTTCGCCAGTTGTTACTTGACTTAGCCCCAGCTGGCTAGGTTCAGACCTGGCGCTGTC
........................................................((((.((.(((((...))))).((((((...)))))).)).)))).....................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532871(GSM532871)
G652N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
............................................................................GGGCGGGGAGGCCCCGCCGCG......................................................................................................................................................... 2115.000.00--10.005.00------------------------------------------
................................................................................GGGGAGGCCCCGCGGCAA........................................................................................................................................................ 184.000.00-------4.00--------------------------------------
...............................................................................................................................................................................................................CTTGACTTAGCCCCAGCTGGGG..................... 223.000.00----3.00-----------------------------------------
..................................................................................GGAGGCCCCGCGGTCTGGA..................................................................................................................................................... 1922.000.00------------1.00-----------------1.00---------------
..............................................................................GCGGGGAGGCCCCGCGG........................................................................................................................................................... 171.000.00----------------------------1.00-----------------
...............................................................................CGGGGAGGCCCCGCGGGGG........................................................................................................................................................ 191.000.00---1.00------------------------------------------
..................................................................................GGAGGCCCCGCGGTCTGGC..................................................................................................................................................... 1921.000.00----------------1.00-----------------------------
............................................................................GGGCGGGGAGGCCCCGCGCG.......................................................................................................................................................... 201.000.00----------------------------------------1.00-----
..................................................................................GGAGGCCCCGCGGTCGGC...................................................................................................................................................... 1811.000.00----------------------1.00-----------------------
.....................................................................................................................TTCTCTTCATACCCAGGGATATCCACAC......................................................................................................... 2811.001.00----------------------------------1.00-----------
............................................................................GGGCGGGGAGGCCCCGCGGCCGG....................................................................................................................................................... 231.000.00--1.00-------------------------------------------
...........................AAATGCCTTCTCATCCCCT............................................................................................................................................................................................................ 191.000.00-----------------------------------------1.00----
................................................................................GGGGAGGCCCCGCGGCC......................................................................................................................................................... 171.000.00------------------------1.00---------------------
...............................................................................CGGGGAGGCCCCGCGGGG......................................................................................................................................................... 181.000.00--1.00-------------------------------------------
............................................................................GGGCGGGGAGGCCCCGCCG........................................................................................................................................................... 191.000.00--1.00-------------------------------------------
...........................................................................................................................................................AGGCAGGATAGCGACAAACACG......................................................................... 2211.001.00---------------------1.00------------------------