ID: uc001ofv.3_intron_14_0_chr11_65633366_f
GENE: (15)
chr11:65633316-65633506+


(3)
AGO2.ip 		(10)
B-CELL 		(12)
BRAIN 		(2)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(1)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAGGAACAAGAGACACTGCTGAGCACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGCAAGAGACGGAACCTGGAGGGAGTGGCAGGGACTGGGGCTGCCCTAGGCCCAGGGCGTGACCCTCGCTGCCTCTCTTCCTGCAGGAATCTGGGGCCTGCTCTGAGCAGGACCTTATCCCAGCTCTACTGCAGCT
......................................................................(((.((((((.(((((.((..(((..((((((......))))))...))))).)))))...)))))).)))..................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormGSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)
..................................................GTGAGGGCAAGAGACGGAACCTGG.....................................................................................................................2418.008.002.001.00------1.00-------1.00---2.00-------------------------1.00----------------------
................................................................CGGAACCTGGAGGGAGTGGCA..........................................................................................................2117.007.003.00-2.00--------1.00----------1.00----------------------------------------------
...............................................................ACGGAACCTGGAGGGAGTGGCA..........................................................................................................2215.005.00--1.00----1.00-----------------1.00-----------1.00---------------------1.00---------
..............ACTGCTGAGCACCATTAAGTGTGGGCGTC....................................................................................................................................................2914.004.00-----4.00---------------------------------------------------------------
..................................................GTGAGGGCAAGAGACGGAACCTGGAGGGAGTGGCAGGGACTGGGGCTGCCCTAGGCCCAGGGCGTGACCCTCGCTGCCTCT............................................................8113.003.00----3.00----------------------------------------------------------------
........................................................................................................................TCGCTGCCTCTCTTCCTGCAG..................................................2113.003.00-1.00------------------------1.001.00-----------------------------------------
..................................................GTGAGGGCAAGAGACGGAACCTGGAG...................................................................................................................2613.003.00----------3.00----------------------------------------------------------
..................................................GTGAGGGCAAGAGACGGAACC........................................................................................................................2113.003.00-------1.00--------------1.00-----------1.00----------------------------------
...........................................................................GGGAGTGGCAGGGACTGGGGC...............................................................................................2112.002.00------------------------------1.00----------------------1.00---------------
..................................................GTGAGGGCAAGAGACGGA...........................................................................................................................1812.002.00------1.00------------------------------------------1.00-------------------
........................................................................................................................TCGCTGCCTCTCTTCCTGCAGA.................................................2212.003.00---------------------------------1.00-----------------1.00-----------------
..................................................GTGAGGGCAAGAGACGGAACCT.......................................................................................................................2212.002.00-1.00-----------------------------1.00-------------------------------------
............................................................GAGACGGAACCTGGAGGGAGTGGCA..........................................................................................................2512.002.00--------1.00-------------------------------1.00----------------------------
...................................................TGAGGGCAAGAGACGGAACCTGG.....................................................................................................................2312.002.00------------------------2.00--------------------------------------------
..................................................................................GCAGGGACTGGGGCTGCCCTAG.......................................................................................2212.002.00--------------------------------1.00---------------------------1.00--------
..................................................GTGAGGGCAAGAGACGGAACCTG......................................................................................................................2312.002.00-------------1.00----1.00--------------------------------------------------
.....ACAAGAGACACTGCTGAGCACCATC.................................................................................................................................................................252.000.00-------------------2.00-------------------------------------------------
.....................................................................................GGGACTGGGGCTGCCCT.........................................................................................1721.501.50-----------0.50--------------------------------------------------0.500.50-----
..........................................................AAGAGACGGAACCTGGAGGGAGTGGCA..........................................................................................................2711.001.00-----------------------1.00---------------------------------------------
........................................................................................................................TCGCTGCCTCTCTTCCTGCAGT.................................................2211.003.00-----------------1.00---------------------------------------------------
...........................................................AGAGACGGAACCTGGAGGGAG...............................................................................................................2111.001.00-------------------------1.00-------------------------------------------
........AGAGACACTGCTGAGCAC.....................................................................................................................................................................1811.001.00------1.00--------------------------------------------------------------
........................................................GCAAGAGACGGAACCTGGAGGGAGTGGCAG.........................................................................................................3011.001.00-1.00-------------------------------------------------------------------
.............CACTGCTGAGCACCATTAAGTGTGGG........................................................................................................................................................2611.001.00---------------------1.00-----------------------------------------------
............................................................GAGACGGAACCTGGAGGGAGTGGCAG.........................................................................................................2611.001.00-1.00-------------------------------------------------------------------
...........................................................AGAGACGGAACCTGGAG...................................................................................................................1711.001.001.00--------------------------------------------------------------------
................................................................................TGGCAGGGACTGGGGCTGC............................................................................................1911.001.00--------------1.00------------------------------------------------------
.AGGAACAAGAGACACTGCTGAGCA......................................................................................................................................................................2411.001.001.00--------------------------------------------------------------------
..................................................GTGAGGGCAAGAGACGGAACCTGGA....................................................................................................................2511.001.001.00--------------------------------------------------------------------
.......................................................GGCAAGAGACGGAACCTGGAGGGAGTGGCA..........................................................................................................3011.001.00-------------------------------------------------------1.00-------------
.....................................................................................GGGACTGGGGCTGCCCAA........................................................................................181.000.00------------------1.00--------------------------------------------------
.............................................................AGACGGAACCTGGAGGGAGTGGCA..........................................................................................................2411.001.00-1.00-------------------------------------------------------------------
..............................AAGTGTGGGCGTCTACAGAGGTGAG........................................................................................................................................2511.001.00------1.00--------------------------------------------------------------
.........GAGACACTGCTGAGCACCATTAAG..............................................................................................................................................................2411.001.00---------------------------------------------------------1.00-----------
............................................................GAGACGGAACCTGGAGGGAGTGGCAGGGA......................................................................................................2911.001.00--------1.00------------------------------------------------------------
...................................................................AACCTGGAGGGAGTGGCA..........................................................................................................1811.001.00--------------------------------------------------1.00------------------
.AGGAACAAGAGACACTGCTGAGC.......................................................................................................................................................................2311.001.00---------------------1.00-----------------------------------------------
..........................................................AAGAGACGGAACCTGGAGGGTG...............................................................................................................221.000.00--1.00------------------------------------------------------------------
........AGAGACACTGCTGAGCAA.....................................................................................................................................................................181.000.00---------------1.00-----------------------------------------------------
.AGGAACAAGAGACACTGCT...........................................................................................................................................................................1911.001.00---1.00-----------------------------------------------------------------
.....................................................AGGGCAAGAGACGGAACCTGGA....................................................................................................................2211.001.00---------------1.00-----------------------------------------------------
.....................................................AGGGCAAGAGACGGAACCT.......................................................................................................................1911.001.00-------1.00-------------------------------------------------------------
.....................................................AGGGCAAGAGACGGAACCTGG.....................................................................................................................2111.001.00-----------1.00---------------------------------------------------------
.......................................................GGCAAGAGACGGAACCTGGAGGGAG...............................................................................................................2511.001.001.00--------------------------------------------------------------------
......CAAGAGACACTGCTGAGCA......................................................................................................................................................................1911.001.00------------------------------------------------1.00--------------------
....AACAAGAGACACTGCTGAG........................................................................................................................................................................1911.001.00---1.00-----------------------------------------------------------------
..................................................GTGAGGGCAAGAGACGGAACCTGGAGGGAG...............................................................................................................3011.001.00---------------------------------------1.00-----------------------------
............................................................GAGACGGAACCTGGAGGGAGTGGC...........................................................................................................2411.001.00-------------------------------------------------------------1.00-------
...............................................................................GTGGCAGGGACTGGGGCTG.............................................................................................1911.001.00-----------------1.00---------------------------------------------------
..........................................................................AGGGAGTGGCAGGGACTGGGG................................................................................................2111.001.00------------1.00--------------------------------------------------------
..........................................................................AGGGAGTGGCAGGGA......................................................................................................1501.001.00------------1.00--------------------------------------------------------
........AGAGACACTGCTGAGCACCATTA................................................................................................................................................................2311.001.00------1.00--------------------------------------------------------------
..................................................GTGAGGGCAAGAGACGGAACCTGGAGGGAGTGGCAGGGACTGGGGCTGCCCTAGGCCCAGGGCGTGACCCTCGCTGCCTCC............................................................811.000.00----1.00----------------------------------------------------------------
.........................................................................GAGGGAGTGGCAGGGACTGGGG................................................................................................2211.001.00----------------------------------------------------------1.00----------
............................................................................GGAGTGGCAGGGACTGGGG................................................................................................1911.001.00--------------------------------------------1.00------------------------
...........................................................................................................................................AGGAATCTGGGGCCTGCTCTGA..............................2211.001.00----------------------------1.00----------------------------------------
..........................................................................AGGGAGTGGCAGGGACTGGG.................................................................................................2011.001.00-------------1.00-------------------------------------------------------
........................................................................................ACTGGGGCTGCCCTAGGC.....................................................................................1811.001.00--------------------------------------------------------1.00------------
..........................................................AAGAGACGGAACCTGGA....................................................................................................................1711.001.00--1.00------------------------------------------------------------------
............................................................GAGACGGAACCTGGAGGGAGTG.............................................................................................................2211.001.00-----------------------------------------1.00---------------------------
........................................................................................................................TCGCTGCCTCTCTTCCTGCAGTA................................................2311.003.00----------------------------------------------------1.00----------------
....................................................................................................................................TTCCTGCAGGAATCTGGGGCCT.....................................2211.001.00-----------------------1.00---------------------------------------------
......................................................GGGCAAGAGACGGAACCTGGAG...................................................................................................................2211.001.00-----------------------------------------------1.00---------------------
....................................................................................AGGGACTGGGGCTGCCCTAGG......................................................................................2111.001.001.00--------------------------------------------------------------------
.......AAGAGACACTGCTGAGCAC.....................................................................................................................................................................1911.001.00------------------------------------1.00--------------------------------
........................................................................................................................................................CTGCTCTGAGCAGGACCTTATCCCAT.............261.000.00--------------1.00------------------------------------------------------
...................................................TGAGGGCAAGAGACGGAACC........................................................................................................................2011.001.00--------------------------------------1.00------------------------------
........................................................................................................................TCGCTGCCTCTCTTCCTGCCGT.................................................221.000.00-----------------------------------1.00---------------------------------
.........................................................................................CTGGGGCTGCCCTAGGC.....................................................................................1730.670.67----------------------------------------------------------------0.330.33---
..............................................................................................................................................................................CCAGCTCTACTGCAGC.1630.330.33--------------------------0.33------------------------------------------
..........................................................................................TGGGGCTGCCCTAGGCCC...................................................................................1840.250.25------------------------------------------------------------------0.25--
................................................................CGGAACCTGGAGGGA................................................................................................................1540.250.25---------------------------0.25-----------------------------------------
...GAACAAGAGACACTGC............................................................................................................................................................................1650.200.20-------------------------------------------------------------------0.20-
..........................................................................................TGGGGCTGCCCTAGGC.....................................................................................1660.170.17--------------------------------------------------------------------0.17
...............................................................................................CTGCCCTAGGCCCAGG................................................................................1690.110.11------------0.11--------------------------------------------------------

Antisense strand
AAGGAACAAGAGACACTGCTGAGCACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGCAAGAGACGGAACCTGGAGGGAGTGGCAGGGACTGGGGCTGCCCTAGGCCCAGGGCGTGACCCTCGCTGCCTCTCTTCCTGCAGGAATCTGGGGCCTGCTCTGAGCAGGACCTTATCCCAGCTCTACTGCAGCT
......................................................................(((.((((((.(((((.((..(((..((((((......))))))...))))).)))))...)))))).)))..................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormGSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)
................................................TTCCGTCTCTTGCCCTCACCT.......................................................................................................................... 2113.003.00---------3.00-----------------------------------------------------------
........................................................................................................................................................................CTGCAGTAGAGCTGGGATAAG.. 2111.001.00------------------------------------------------------1.00--------------
....AACAAGAGACACTGCTGTTTA...................................................................................................................................................................... 211.000.00-------------------------------------------1.00-------------------------
.........................................................................................................................CGCTGCCTCTCTTCCTTGTC.................................................. 201.000.00------------------------------------------1.00--------------------------