ID: uc001ntq.1_intron_16_0_chr11_62368162_r.5p
GENE: (1)
chr11:62368695-62368944-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(3)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(22)
SKIN 		(1)
XRN.ip

Sense strand
GGAGGCGGCGGCGGGAACGGCCATGGCGGCCAACATGTACCGGGTGGGAGGTGAGTACCGGGCGCAGGGATACGGGGCCCGGGGCGGGAGAGGTTGGGGTAGGGACCTGAGGGGCTCGGCACCGGGTGGCGCGAGGCGCAGCGTATGGGGCAGCGTGGACCGGAGCGCGGACCGGAACCGGAACCGGGAGACGAGGAGAGAGGGTGCGGGGAACCGCGACGCGGCAGGGCTCCGAGACTCCCAGAGAGAA
........................................................................(((.((((((.((..(((...((.((((....)))).))...))).)).)))))).((((..(((((.((.......)).)))....))...))))...)))............................................................................
.....................................................................70...........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
............................................................................................................................................................GGACCGGAGCGCGGAC..............................................................................16112.0012.007.00-1.00-2.00-1.00----------------------------------1.00------------------
.............................................................................................................................................................GACCGGAGCGCGGACAGA...........................................................................1819.001.002.00-2.00-1.00-2.00-----------------------1.00----------------1.00------------
............................................................................................................................................................GGACCGGAGCGCGGACAGA...........................................................................1918.0012.005.00-3.00---------------------------------------------------------
..........................................................................GGGCCCGGGGCGGGATC...............................................................................................................................................................176.000.00-----6.00------------------------------------------------------
..........................................................................................................................................................................................................................ACGCGGCAGGGCTCCGA...............1716.006.00---6.00--------------------------------------------------------
..................................................GTGAGTACCGGGCGCAGG......................................................................................................................................................................................1814.004.00-3.00---------1.00------------------------------------------------
............................................................................................................................................................GGACCGGAGCGCGGACAG............................................................................1813.0012.002.00---1.00-------------------------------------------------------
............................................................................................................................................................GGACCGGAGCGCGGACA.............................................................................1713.0012.001.00-1.00-------1.00-------------------------------------------------
.............................................................................................................................................................GACCGGAGCGCGGACAG............................................................................1713.001.002.00------------------------------------1.00----------------------
............................................................................................................................................................GGACCGGAGCGCGGA...............................................................................1512.002.002.00-----------------------------------------------------------
................................................................................................................................................................................ACCGGAACCGGGAGAAAA........................................................182.000.00------------2.00-----------------------------------------------
..............................................................................................................................................................................................................................GGCAGGGCTCCGAGACT...........1711.001.00---------------------------1.00--------------------------------
...GGCGGCGGCGGGAACGGAA....................................................................................................................................................................................................................................191.000.00-------------------------------------------1.00----------------
...................................................................................GCGGGAGAGGTTGGGCA......................................................................................................................................................171.000.00-1.00----------------------------------------------------------
...................GCCATGGCGGCCAACATGTA...................................................................................................................................................................................................................2011.001.00------------------------------------------1.00-----------------
........................................................................................................................................................GCGTGGACCGGAGCGCGG................................................................................1811.001.00----------------------------------------1.00-------------------
...........................................................................................................................................................................CCGGAACCGGAACCGGGAGACGAGGAGAGAGG...............................................3211.001.00-----------1.00------------------------------------------------
..................................................................................................................................................................GAGCGCGGACCGGAACCGCA....................................................................201.000.00---------------1.00--------------------------------------------
.........................................................................................................................................................CGTGGACCGGAGCGCG.................................................................................1611.001.00-------------1.00----------------------------------------------
.................................................................................................................................................................................CCGGAACCGGGAGACGAGGAGAG..................................................2311.001.00-1.00----------------------------------------------------------
....................................................................................................................................................................GCGCGGACCGGAACCGAGAT..................................................................201.000.00--------------------------1.00---------------------------------
..................................................................................................................................................................................................................................GGGCTCCGAGACTCCCAGAGAG..2211.001.00--------------------1.00---------------------------------------
...........................GGCCAACATGTACCGGGTGGG..........................................................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------
........................................................................................................................................................GCGTGGACCGGAGCGCGGACC.............................................................................2111.001.00------------------------1.00-----------------------------------
..........................................................................................................CTGAGGGGCTCGGCACCGG.............................................................................................................................1911.001.00----------------------------------------------1.00-------------
............................................................................................................................................................GGACCGGAGCGCGGACAAC...........................................................................1911.0012.001.00-----------------------------------------------------------
..................................ATGTACCGGGTGGGAGATTA....................................................................................................................................................................................................201.000.00---------------------------------1.00--------------------------
.................................................................................................GGTAGGGACCTGAGGGGCTCGG...................................................................................................................................2211.001.00-1.00----------------------------------------------------------
.......................................................................................................................CACCGGGTGGCGCGAGGCGCAGCGTATA.......................................................................................................281.000.00------------------------------------------------1.00-----------
..............................................................................................................................................................ACCGGAGCGCGGACCGA...........................................................................171.000.00----1.00-------------------------------------------------------
.............................................................................................................................................................GACCGGAGCGCGGACCGGAACCGGAACC.................................................................2811.001.00-------------1.00----------------------------------------------
.................................................................................................................................................................................................................GGAACCGCGACGCGGCAGGCA....................211.000.00--------------------------------------1.00---------------------
.....CGGCGGCGGGAACGGAAC...................................................................................................................................................................................................................................181.000.00-------------------------------------------------1.00----------
................................................................................GGGGCGGGAGAGGTTGGG........................................................................................................................................................1811.001.00---------------------------------------------1.00--------------
...................................................................................GCGGGAGAGGTTGGGCAA.....................................................................................................................................................181.000.00-------------------1.00----------------------------------------
.............................................................................................................................................................................................................GCGGGGAACCGCGACGCGGCAGGGCT...................2611.001.00-------1.00----------------------------------------------------
..............................................................................................................................................................................................................CGGGGAACCGCGACGCGG..........................1811.001.00---1.00--------------------------------------------------------
................................................................................................................................................................................ACCGGAACCGGGAGACGA........................................................1811.001.00-------------------------------1.00----------------------------
...............................................................................................................................................................CCGGAGCGCGGACCGCCG.........................................................................181.000.00----------------------------------------------------1.00-------
............................................................................................................................................................GGACCGGAGCGCGGACAGAT..........................................................................2011.0012.00----------1.00-------------------------------------------------
....GCGGCGGCGGGAACGGAACC..................................................................................................................................................................................................................................201.000.00---------------------------------------------------1.00--------
............................................................................................................................................................GGACCGGAGCGCGGACATA...........................................................................1911.0012.00----1.00-------------------------------------------------------
.........................................................................GGGGCCCGGGGCGGG..................................................................................................................................................................1501.001.00------------------------------------1.00-----------------------
.............................................................................................................................................................GACCGGAGCGCGGAC..............................................................................1511.001.001.00-----------------------------------------------------------
....GCGGCGGCGGGAACGAAA....................................................................................................................................................................................................................................181.000.00---------------------------------------1.00--------------------
....................................................................................................................................................................................................................ACCGCGACGCGGCAGGGCT...................1911.001.00--------------------------------------------------1.00---------
............................................................................................................................................................................................AGACGAGGAGAGAGGGCGGA..........................................201.000.00--------------1.00---------------------------------------------
.................................................................................................................................................................................CCGGAACCGGGAGACGAGGAGAGAGGG..............................................2711.001.00----------------1.00-------------------------------------------
.........................................................................................................................................................................................GGGAGACGAGGAGAGTC................................................171.000.00----------------------1.00-------------------------------------
..............................................................................................................................................................................................................CGGGGAACCGCGACGCGGCA........................2011.001.00-1.00----------------------------------------------------------
........................................................................CGGGGCCCGGGGCGGACT................................................................................................................................................................181.000.00---------------1.00--------------------------------------------
.............................................................................................................................................................................GGAACCGGAACCGGGAGACGAGGAGAGAG................................................2911.001.00---------1.00--------------------------------------------------
...GGCGGCGGCGGGAACGAAAC...................................................................................................................................................................................................................................201.000.00--------------------------------1.00---------------------------
.............................................................................................................................................................GACCGGAGCGCGGACAGAT..........................................................................1911.001.00-----------------1.00------------------------------------------
....GCGGCGGCGGGAACGAAAC...................................................................................................................................................................................................................................191.000.00---------------------1.00--------------------------------------
........................................CGGGTGGGAGGTGAGTACCGGGCGCAGGGAT...................................................................................................................................................................................3111.001.00----------------------------------1.00-------------------------
..............GAACGGCCATGGCGGCCAACATGTACCGG...............................................................................................................................................................................................................2911.001.00--------------------------------------------1.00---------------
.................................................................................GGGCGGGAGAGGTTGCTCT......................................................................................................................................................191.000.00-----------------------------1.00------------------------------
.GAGGCGGCGGCGGGACCGA......................................................................................................................................................................................................................................191.000.00------------------1.00-----------------------------------------
.........................................................................GGGGCCCGGGGCGGGA.................................................................................................................................................................1650.800.800.20------------------------------------------------------0.200.200.20--
..........................CGGCCAACATGTACCGGGT.............................................................................................................................................................................................................1920.500.50--------0.50---------------------------------------------------
.........................................................................GGGGCCCGGGGCGGGAG................................................................................................................................................................1720.500.50-----------------------------------------------------0.50------
.........................GCGGCCAACATGTACCGG...............................................................................................................................................................................................................1820.500.50-0.50----------------------------------------------------------
......................................................GTACCGGGCGCAGGGA....................................................................................................................................................................................1630.330.33--------0.33---------------------------------------------------
..........................................................................................................................................................................ACCGGAACCGGAACCGG...............................................................1740.250.25--------0.25---------------------------------------------------
.........................................................................GGGGCCCGGGGCGGGAATC..............................................................................................................................................................1950.200.80--0.20---------------------------------------------------------
.........................................................................GGGGCCCGGGGCGGGAAC...............................................................................................................................................................1850.200.80------------------------------------------------------0.20-----
............................................................................................................................................................................CGGAACCGGAACCGG...............................................................1570.140.14----------------------------------------------------------0.14-

Antisense strand
GGAGGCGGCGGCGGGAACGGCCATGGCGGCCAACATGTACCGGGTGGGAGGTGAGTACCGGGCGCAGGGATACGGGGCCCGGGGCGGGAGAGGTTGGGGTAGGGACCTGAGGGGCTCGGCACCGGGTGGCGCGAGGCGCAGCGTATGGGGCAGCGTGGACCGGAGCGCGGACCGGAACCGGAACCGGGAGACGAGGAGAGAGGGTGCGGGGAACCGCGACGCGGCAGGGCTCCGAGACTCCCAGAGAGAA
........................................................................(((.((((((.((..(((...((.((((....)))).))...))).)).)))))).((((..(((((.((.......)).)))....))...))))...)))............................................................................
.....................................................................70...........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.............................CCCACCCGGTACATGTTGG.......................................................................................................................................................................................................... 1912.002.00-------2.00----------------------------------------------------
...........................................................................................................................................................................CCGGAACCGGAACCGG............................................................... 161.000.00-----------------------------------1.00------------------------
.........................................................................GGGGCCCGGGGCGGGAGCC.............................................................................................................................................................. 1921.000.00--------------1.00---------------------------------------------
....................................................................................................................................CTGCCCCATACGCTGCGCCTC................................................................................................. 2111.001.00-----------------------1.00------------------------------------
......................................................................................................................................................................................................................................TCTCTCTGGGAGTCTCGGA. 1911.001.00-------------------------1.00----------------------------------
............................................................................................................................................CACGCTGCCCCATACGC............................................................................................. 1711.001.00--------1.00---------------------------------------------------
...................................................................................................................................................................................................CCCGCACCCTCTCTC........................................ 1570.290.29----------------0.14------------------------------------------0.14
.....................................................................................................................................................................................................TCCCCGCACCCTCTC...................................... 1560.170.17------------------------------------------------------0.17-----