ID: uc001nrz.1_intron_2_0_chr11_61396512_f.3p
GENE: RPLP0P2(3)
chr11:61403401-61403650+


(1)
AGO2.ip 		(12)
BRAIN 		(12)
BREAST 		(7)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
UTERUS

Sense strand
CTGGAAGAAGCAGCTTAGGCCTGATGAGGACGCCGGGGCTCCATGGCAGGAGGAGGGTGTGCTGGGGAGGAGGGGTGTGGGGAGGACAGTGCCACACCTGTCAGCCTGGGCTGTCCCTGGAGGAGGGGAGGGAGGAGTTTTTGTTCTCTTGGCTTCTCTGTGCTTTTTTGCAGTGGCACAAATTGCTTTTGTAATAACAGGAAAAAACGATCAACGAACCTTCATTTAAGAAAAAGCACAGCGTTCTCAT
.................................................................((..((.((((((((...........)))))))).))..))....((.(((((......))))).))(((((........)))))....................................................................................................
.................................................................66...................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
................................................................................................................................AGGGAGGAGTTTTTGCTGT.......................................................................................................1945.000.0045.00---------------------------------------------
................................................................................................................................AGGGAGGAGTTTTTGGTGT.......................................................................................................1921.000.0021.00---------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCTGT.......................................................................................................2013.000.00-11.00-1.00-1.00----------------------------------------
................................................................................................................................AGGGAGGAGTTTTTGCT.........................................................................................................1710.000.0010.00---------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGTGT.......................................................................................................207.000.00-3.00----1.00-----1.001.00------------1.00-------------------
................................................................................................................................AGGGAGGAGTTTTTGGTTT.......................................................................................................196.000.005.00---------------------------1.00-----------------
................................................................................................................................AGGGAGGAGTTTTTGGT.........................................................................................................176.000.006.00---------------------------------------------
................................................................................................................................AGGGAGGAGTTTTTGCTTT.......................................................................................................195.000.005.00---------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTGTTT.....................................................................................................224.000.00-3.00------------1.00-------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTGTT......................................................................................................214.000.00-2.00-1.00-1.00----------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCTTT.......................................................................................................203.000.00----1.00--1.001.00-------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTGT.......................................................................................................203.000.00--1.00-1.00--------1.00--------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCTG........................................................................................................193.000.00--1.00----1.00---1.00----------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTTT.......................................................................................................202.000.00---------------2.00------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGTTT.......................................................................................................202.000.00-1.00------1.00-------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTTCAG........................................................................................................192.000.00---1.00--1.00---------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCT.........................................................................................................182.000.00--1.00------1.00------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGTGG.......................................................................................................202.000.00-2.00--------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCCGT.......................................................................................................202.000.00-2.00--------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCCTT.......................................................................................................202.000.00-2.00--------------------------------------------
..............................................................................................................................GGAGGGAGGAGTTTTATTA.........................................................................................................191.000.00-----------------------1.00----------------------
......................................................................AGGGGTGTGGGGAGGTGTT.................................................................................................................................................................191.000.00------------------------1.00---------------------
...............................................................................................................................GAGGGAGGAGTTTTTTCA.........................................................................................................181.000.00---------------------------------------1.00------
...............................................................................................................................GAGGGAGGAGTTTTTGTTGGT......................................................................................................211.000.00--------------1.00-------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTT........................................................................................................191.000.00---1.00------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTCGT.......................................................................................................201.000.00-1.00--------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGTG........................................................................................................191.000.00------1.00---------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGTT........................................................................................................191.000.00----------------------------------1.00-----------
...............................................................................................................................GAGGGAGGAGTTTTTTCTG........................................................................................................191.000.00-----------1.00----------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCCTG.......................................................................................................201.000.00-1.00--------------------------------------------
....................................................................................................................................................................................AATTGCTTTTGTAATGG.....................................................171.000.00-------------------1.00--------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTTTTT.....................................................................................................221.000.00-1.00--------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGGCTT.......................................................................................................201.000.00-1.00--------------------------------------------
.............................................GCAGGAGGAGGGTGTGGTGG.........................................................................................................................................................................................201.000.00-1.00--------------------------------------------
..............................................................................................................................................GTTCTCTTGGCTTCTTAT..........................................................................................181.000.00-----------------------------------------1.00----
................................................................................................................................AGGGAGGAGTTTTTGCCTT.......................................................................................................191.000.001.00---------------------------------------------
............................................GGCAGGAGGAGGGTGTGGGGT.........................................................................................................................................................................................211.000.00------------1.00---------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTTGTG........................................................................................................191.000.00--1.00-------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGCTA........................................................................................................191.000.00-1.00--------------------------------------------
.........................................................................................................................................................................................................AAAAAACGATCAACGATAG..............................191.000.00---------------------------1.00------------------
................................................................................................................................AGGGAGGAGTTTTTGCTG........................................................................................................181.000.001.00---------------------------------------------
.......................................................................................................................................AGTTTTTGTTCTCTTGTT.................................................................................................181.000.00-------------------------------1.00--------------
...............................................................................................................................GAGGGAGGAGTTTTTTGTT........................................................................................................191.000.00------------------------------1.00---------------
.........................................................................................................................................................................................................AAAAAACGATCAACGAAAA..............................191.000.00-------------------------------------1.00--------
...............................................................................................................................GAGGGAGGAGTTTTTTACG........................................................................................................191.000.00----------------1.00-----------------------------
........................................CCATGGCAGGAGGAGGGTGTGCT...........................................................................................................................................................................................2311.001.00------------------------------------1.00---------
..............................................................................................................................GGAGGGAGGAGTTTTTGCTGT.......................................................................................................2121.000.50---0.50--------------------------------------0.50---
...............................................................................................................................GAGGGAGGAGTTTTTGCTGG.......................................................................................................201.000.00-1.00--------------------------------------------
......................................................................................................................................................................................................AGGAAAAAACGATCAACG..................................1811.001.00-----------------------------1.00----------------
...............................................................................................................................GAGGGAGGAGTTTTTGCTGA.......................................................................................................201.000.00----1.00-----------------------------------------
..........................................ATGGCAGGAGGAGGGCATG.............................................................................................................................................................................................191.000.00----------------------------------------1.00-----
...............................................................................................................................GAGGGAGGAGTTTTTGTGGAT......................................................................................................211.000.00-1.00--------------------------------------------
................................................................................................................................AGGGAGGAGTTTTTGCCGT.......................................................................................................191.000.001.00---------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTGGG.......................................................................................................201.000.00-----1.00----------------------------------------
.........................................................................................................................................TTTTTGTTCTCTTGGTTG...............................................................................................181.000.00---------------------------------1.00------------
...............................................................................................................................GAGGGAGGAGTTTTTGGT.........................................................................................................181.000.00----------------------1.00-----------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTTTT......................................................................................................211.000.00--1.00-------------------------------------------
................................................................................................................................AGGGAGGAGTTTTTGCTCG.......................................................................................................191.000.001.00---------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTGTTGGTT.....................................................................................................221.000.00-1.00--------------------------------------------
...............................................................................................................................GAGGGAGGAGTTTTTTCAA........................................................................................................191.000.00---------1.00------------------------------------
..............................................................................................................................GGAGGGAGGAGTTTTTG...........................................................................................................1720.500.50----------------0.50-----------------------------
............................................................................................................GGCTGTCCCTGGAGGAG.............................................................................................................................1730.330.33--------------------------------------------0.33-
...................................................................AGGAGGGGTGTGGGGAGG.....................................................................................................................................................................1850.200.20---------------------------------------------0.20

Antisense strand
CTGGAAGAAGCAGCTTAGGCCTGATGAGGACGCCGGGGCTCCATGGCAGGAGGAGGGTGTGCTGGGGAGGAGGGGTGTGGGGAGGACAGTGCCACACCTGTCAGCCTGGGCTGTCCCTGGAGGAGGGGAGGGAGGAGTTTTTGTTCTCTTGGCTTCTCTGTGCTTTTTTGCAGTGGCACAAATTGCTTTTGTAATAACAGGAAAAAACGATCAACGAACCTTCATTTAAGAAAAAGCACAGCGTTCTCAT
.................................................................((..((.((((((((...........)))))))).))..))....((.(((((......))))).))(((((........)))))....................................................................................................
.................................................................66...................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
...............................................................GGGGAGGAGGGGTGTGGCGC....................................................................................................................................................................... 205.000.00----------1.00------1.001.00------1.00------------1.00-------
...............................................................GGGGAGGAGGGGTGTGCCC........................................................................................................................................................................ 191.000.00---------------------1.00------------------------
...............................................................GGGGAGGAGGGGTGTGGC......................................................................................................................................................................... 181.000.00----------1.00-----------------------------------
...............................................................GGGGAGGAGGGGTGTGGCG........................................................................................................................................................................ 191.000.00--------------------1.00-------------------------
...........................................................................................CAGGCTGACAGGTGTGG.............................................................................................................................................. 1711.001.00-----------------------------------1.00----------
...........................................................................................................................................................CTCTGTGCTTTTTTGCTG............................................................................. 181.000.00--------------------------------1.00-------------
......................................................................................................................ACTCCTCCCTCCCCTCCTCC................................................................................................................ 2020.500.50-------------------------------------------0.50--