ID: uc001mjb.2_intron_14_0_chr11_10825598_r
GENE: (7)
chr11:10825548-10825733-


(2)
AGO2.ip 		(3)
B-CELL 		(4)
BRAIN 		(16)
BREAST 		(20)
CELL-LINE 		(9)
CERVIX 		(2)
FIBROBLAST 		(9)
HEART 		(10)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(32)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AATTTCCAAATTACAAGATGAATTTGAAAACCGAACTAGAAATGTTGATGGTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGTCTATGATAAGCGTGAAAATCCCCTCCTCCCCGAGGAGGAGGAACAGAGA
.....................................................(((.(((.((((((.(((..((((....))))))).))))))))).)))....................................................................................
..................................................51..........................................................111.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191520(GSM715630)
89genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAG..................................................861145.00145.0092.0044.00---------5.004.00---------------------------------------------------------------------------------------------------------
......................................................................................................GAATGTTGGCTTACTTCATTGGTATCTTTTT.....................................................31126.0026.00--26.00-------------------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGTT................................................88117.0014.00-16.00----------1.00---------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCA...................................................85115.0015.00-15.00--------------------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGT.................................................87114.0014.00-13.00----------1.00---------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTC....................................................84113.0013.00-13.00--------------------------------------------------------------------------------------------------------------------
.................................AACTAGAAATGTTGATG........................................................................................................................................1739.009.00----------1.33----4.33-0.33------------------------0.33---------------1.00----------1.00-------------------------------------------0.330.33---
...............AGATGAATTTGAAAACCGAACTAGA..................................................................................................................................................2519.009.00----1.00--1.00--------2.00------------2.00-----------------1.00--------------------1.00--------1.00----------------------------------------
......................................................GACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAG..................................................8219.009.009.00---------------------------------------------------------------------------------------------------------------------
...................................................TAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAG..................................................8517.007.007.00---------------------------------------------------------------------------------------------------------------------
......................................................................................TTTTCAGCTTAATTCTGAATG...............................................................................2116.006.00-------------5.00------------------------------------------------------------------------1.00-------------------------------
................................GAACTAGAAATGTTGATG........................................................................................................................................1826.006.00---------1.502.00------------0.50-----------1.00---------------------------------------------------------------------------0.500.50-----
....................AATTTGAAAACCGAACTAGA..................................................................................................................................................2015.005.00------------------1.00---------1.00-1.00---------------1.00------------------------------------------------------------1.00----------
............ACAAGATGAATTTGAAAACCGA........................................................................................................................................................2215.005.00----4.00-1.00---------------------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAAC......................................................................................................................................................2115.005.00------1.00-------------------2.00-----1.00------------1.00------------------------------------------------------------------------
......................................................GACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGT.................................................8315.005.00-5.00--------------------------------------------------------------------------------------------------------------------
.......AAATTACAAGATGAATTTGAAAACCG.........................................................................................................................................................2614.004.00------1.003.00--------------------------------------------------------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAAC......................................................................................................................................................2414.004.00-----1.00-2.00----------------------------------------------1.00---------------------------------------------------------------
........AATTACAAGATGAATTTGAAAACC..........................................................................................................................................................2414.004.00---1.00-2.001.00---------------------------------------------------------------------------------------------------------------
.......................TTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................2714.004.00---1.00----------------1.00----------------------------------------------------------1.00------------------------1.00-------------
..................................ACTAGAAATGTTGATG........................................................................................................................................1634.004.00----------2.67------------0.33----------------0.33--0.33-----------------------------------------------------------------------0.33--
..................................................GTAAGACTTATAGCTGA.......................................................................................................................1714.004.00---------4.00------------------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACTA....................................................................................................................................................2314.004.00----3.00---------1.00-------------------------------------------------------------------------------------------------------
........AATTACAAGATGAATTTGAAAACCGAACT.....................................................................................................................................................2914.004.00--------1.00-----1.00--2.00----------------------------------------------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAACTAGA..................................................................................................................................................2813.003.00------2.00-----------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................ATGATAAGCGTGAAAATCCCCTC........................2313.003.00----2.00---1.00-------------------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACTAG...................................................................................................................................................2413.003.00---1.00--1.00-----------------1.00---------------------------------------------------------------------------------------------
................GATGAATTTGAAAACCGAACTAGAAA................................................................................................................................................2613.003.00-------------------------------2.00-----------------------------------------1.00--------------------------------------------
...............AGATGAATTTGAAAACCG.........................................................................................................................................................1823.003.00-----1.001.50-0.50-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................CCCCGAGGAGGAGGAACAG...1912.002.00------------------------------------------------------------------1.00-----------------------------------1.00---------------
.............CAAGATGAATTTGAAAACCGAAC......................................................................................................................................................2312.002.00-----2.00----------------------------------------------------------------------------------------------------------------
.................ATGAATTTGAAAACCGAACTAGA..................................................................................................................................................2312.002.00----------------------------------1.00---------------------1.00-------------------------------------------------------------
...............................CGAACTAGAAATGTTGATGTC......................................................................................................................................212.000.00------------------------1.00-----------------------------------------------1.00---------------------------------------------
...............AGATGAATTTGAAAACCGAACT.....................................................................................................................................................2212.002.00-----2.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................CGAGGAGGAGGAACAGAG.1812.002.00----------------------1.00-----------------------------------------------------------1.00-----------------------------------
........AATTACAAGATGAATTTGAAAAC...........................................................................................................................................................2312.002.00--------1.00------------------------------------------------------------------------------1.00------------------------------
.............CAAGATGAATTTGAAAACCG.........................................................................................................................................................2012.002.00--------1.00---------------------------1.00---------------------------------------------------------------------------------
..............................................................................................TTAATTCTGAATGTTGGCTTACTTCATTGGT.............................................................3112.002.00-----------------------------------------1.00-------------------------1.00--------------------------------------------------
................GATGAATTTGAAAACCGAACTAGA..................................................................................................................................................2412.002.00--------------------------------------------------------------------------1.00---------------------------------1.00---------
............ACAAGATGAATTTGAAAACCG.........................................................................................................................................................2112.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................TCCCCGAGGAGGAGGAAC.....1812.002.00------------------1.00------------------------------------------------------------------------------------------1.00--------
............ACAAGATGAATTTGAAAACC..........................................................................................................................................................2012.002.00----1.00---------------------------------------------------------1.00-------------------------------------------------------
..............AAGATGAATTTGAAAACCGAACTAGA..................................................................................................................................................2612.002.00-----1.001.00---------------------------------------------------------------------------------------------------------------
.....................ATTTGAAAACCGAACTAGAAATGTTG...........................................................................................................................................2612.002.00----2.00-----------------------------------------------------------------------------------------------------------------
..............AAGATGAATTTGAAAACCGAA.......................................................................................................................................................2112.002.00-----------------------------------------------------------------1.00----------------------1.00-----------------------------
................................................................................................................................................AAGCGTGAAAATCCCCTCCT......................2012.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------
.............................ACCGAACTAGAAATGTTGA..........................................................................................................................................1912.002.00---------------------1.001.00-----------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACTAGAAATG..............................................................................................................................................2912.002.00---------1.00--------------------------------------------------------------------------------------1.00---------------------
.......................................................................................................................................................................CGAGGAGGAGGAACAGAGA1912.002.00----1.00--------------------------------------------------------------------------------------1.00--------------------------
................GATGAATTTGAAAACC..........................................................................................................................................................1671.571.57-----0.43--0.29-----0.43-------------------------0.14---------------------------------------------------------------------------0.29-
.............................ACCGAACTAGAAATGTTGATG........................................................................................................................................2111.001.00--------------------------------------1.00-------------------------------------------------------------------------------
.................ATGAATTTGAAAACCGA........................................................................................................................................................1711.001.00--------1.00-------------------------------------------------------------------------------------------------------------
................GATGAATTTGAAAACCGAACTAGAAATG..............................................................................................................................................2811.001.00---------------------------1.00------------------------------------------------------------------------------------------
..............................................................................................TTAATTCTGAATGTTGGCTTACTTC...................................................................2511.001.00----------------------------------------------------------------------------1.00-----------------------------------------
...........TACAAGATGAATTTGAAAACCG.........................................................................................................................................................2211.001.00-----1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................CCGAGGAGGAGGAACAGAG.1911.001.00---------------------------------------------------------------------------------1.00------------------------------------
..........................................................................................................................................TATGATAAGCGTGAAAATCCCCTCCT......................2611.001.00-----1.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................AATGTTGGCTTACTTTAA.................................................................181.000.00----------------------------------------------------1.00-----------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAA.......................................................................................................................................................2311.001.00---1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................CTCCTCCCCGAGGAGGAGGA.......2011.001.00-----------------------------------------------------------------------------------1.00----------------------------------
.........ATTACAAGATGAATTTGAAA.............................................................................................................................................................2011.001.00----------------------------------------------------------------1.00-----------------------------------------------------
.........................GAAAACCGAACTAGAAATGTTGATGTC......................................................................................................................................271.000.00--------------1.00-------------------------------------------------------------------------------------------------------
.............................ACCGAACTAGAAATGTTGATGTC......................................................................................................................................2311.001.00-------------------------------------1.00--------------------------------------------------------------------------------
....................AATTTGAAAACCGAACTAG...................................................................................................................................................1911.001.00---------------------1.00------------------------------------------------------------------------------------------------
.........ATTACAAGATGAATTTGAAAACCGAACTAGAA.................................................................................................................................................3211.001.00---------------------------------------------------------------------------------------------1.00------------------------
...........................................................................................................................................ATGATAAGCGTGAAAATC.............................1811.001.00---1.00------------------------------------------------------------------------------------------------------------------
............................AACCGAACTAGAAATGTTGATGGTAA....................................................................................................................................2611.001.00-------------------------------------------------------------------------------------------------1.00--------------------
.............CAAGATGAATTTGAAAACCGA........................................................................................................................................................2111.001.00---------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................TCCCCGAGGAGGAGGAACA....1911.001.00-------------------------------------1.00--------------------------------------------------------------------------------
.................ATGAATTTGAAAACCGAACTA....................................................................................................................................................2111.001.00------1.00---------------------------------------------------------------------------------------------------------------
.................................................................GATAATAAGTACTACTGTAT.....................................................................................................2011.001.00-------------------1.00--------------------------------------------------------------------------------------------------
.............................................................................................CTTAATTCTGAATGTTGG...........................................................................1811.001.00-----------------------------------------------------------------------------------------------------1.00----------------
...........TACAAGATGAATTTGAAAACCGAAC......................................................................................................................................................2511.001.00-------------------------1.00--------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACAAG...................................................................................................................................................2411.005.00---------------------------------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................GAGGAGGAGGAACAGACACA201.000.00------------------------------------------------------------------------------------------1.00---------------------------
..........TTACAAGATGAATTTGAAAC............................................................................................................................................................201.000.00------------------------------------------------------------------------------1.00---------------------------------------
..................TGAATTTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................3211.001.00--------------------1.00-------------------------------------------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAACTAGAA.................................................................................................................................................2911.001.00----------------------------------------------------------------------1.00-----------------------------------------------
....................AATTTGAAAACCGAACTAGAAATGT.............................................................................................................................................2511.001.00---------1.00------------------------------------------------------------------------------------------------------------
....................AATTTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................3011.001.00----------1.00-----------------------------------------------------------------------------------------------------------
....................AATTTGAAAACCGAACTAGAAATG..............................................................................................................................................2411.001.00----------------1.00-----------------------------------------------------------------------------------------------------
.............................ACCGAACTAGAAATGTTGATGTCT.....................................................................................................................................2411.001.00------1.00---------------------------------------------------------------------------------------------------------------
................................................................................................................TTACTTCATTGGTATCTTT.......................................................1911.001.00-------------------------------------------------1.00--------------------------------------------------------------------
.............................ACCGAACTAGAAATGTTG...........................................................................................................................................1811.001.00-----------------------1.00----------------------------------------------------------------------------------------------
.................ATGAATTTGAAAACCGAAC......................................................................................................................................................1911.001.00-----------------------1.00----------------------------------------------------------------------------------------------
.................................................................................................ATTCTGAATGTTGGCTTACT.....................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................ATAAGCGTGAAAATCCCCTCC.......................2111.001.00-----1.00----------------------------------------------------------------------------------------------------------------
...............................................................................................................CTTACTTCATTGGTATCTTTTTCAGAA................................................2711.001.00-------1.00--------------------------------------------------------------------------------------------------------------
................................................................................................................TTACTTCATTGGTATCTTTTTCAGAA................................................2611.001.00-------1.00--------------------------------------------------------------------------------------------------------------
......................TTTGAAAACCGAACTAGAAATGTTGTTG........................................................................................................................................281.000.00------------------------------------------------------------1.00---------------------------------------------------------
.........ATTACAAGATGAATTTGAAAAC...........................................................................................................................................................2211.001.00---------------------------------------------------------1.00------------------------------------------------------------
......................................................................................................................................................................CCGAGGAGGAGGAACAGA..1811.001.00------------------1.00---------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGA........................................................................................................................................................1911.001.00-------------------------------------------------------------1.00--------------------------------------------------------
.....................ATTTGAAAACCGAACTAGA..................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------1.00-----------------------
...................................................TAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGTA................................................871.000.00-1.00--------------------------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACAGAC..................................................................................................................................................2511.005.00--------------------------------1.00-------------------------------------------------------------------------------------
.....................ATTTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................2911.001.00-----------------------------------1.00----------------------------------------------------------------------------------
...................GAATTTGAAAACCGAACTAGAAATGT.............................................................................................................................................2611.001.00---1.00------------------------------------------------------------------------------------------------------------------
...............................................................CTGATAATAAGTACTACTGTAT.....................................................................................................2211.001.00------------------------------------------------1.00---------------------------------------------------------------------
..............AAGATGAATTTGAAAACCG.........................................................................................................................................................1921.001.00-----0.50--------------------------------------------------------------------------------------------------------0.50-------
................GATGAATTTGAAAACCGAACT.....................................................................................................................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................TGAAAATCCCCTCCTCCCCGAGGAGG...........2611.001.00--------1.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................................................GTCTATGATAAGCGTG...................................1611.001.00--------------------------------------------1.00-------------------------------------------------------------------------
..................TGAATTTGAAAACCGAACTA....................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------1.00--------------------------------
...................GAATTTGAAAACCGAACTAGA..................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------1.00--------------
..................................................................................................................................................................CTCCCCGAGGAGGAGGAAC.....1911.001.00--------------------------------------------------------------------------------1.00-------------------------------------
.........................GAAAACCGAACTAGAAATGTTGATA........................................................................................................................................251.000.00---1.00------------------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCGG..................................................8611.0013.001.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................CAGCTTAATTCTGAATGTTGGCTTACTTC...................................................................2911.001.00----------------------------------------------------------------------------------------------------1.00-----------------
............................AACCGAACTAGAAATGTT............................................................................................................................................1811.001.00---1.00------------------------------------------------------------------------------------------------------------------
.........ATTACAAGATGAATTTGAAAACCGAA.......................................................................................................................................................2611.001.00----------------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................TCTTTTTCAGTCTATCTTT.........................................191.000.00---1.00------------------------------------------------------------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAACTAGAAATG..............................................................................................................................................3211.001.00---------------------------------------------------1.00------------------------------------------------------------------
.......................................................................................................................................GTCTATGATAAGCGTGAAAATCCCC..........................2511.001.00------------------------------------1.00---------------------------------------------------------------------------------
..............................CCGAACTAGAAATGTTGATGTCT.....................................................................................................................................231.000.00-------------------------------------------------------1.00--------------------------------------------------------------
.................ATGAATTTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................3311.001.00---------------------------------------1.00------------------------------------------------------------------------------
..................TGAATTTGAAAACCGAACT.....................................................................................................................................................1911.001.00------------------------------------------------------------------------------------1.00---------------------------------
.............CAAGATGAATTTGAAAACC..........................................................................................................................................................1911.001.00------1.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................CCCGAGGAGGAGGAACAGA..1911.001.00--------------------------------------------------1.00-------------------------------------------------------------------
...............................................ATGGTAAGACTTATAGCTG........................................................................................................................1911.001.00------------------------------------------1.00---------------------------------------------------------------------------
........................TGAAAACCGAACTAGAAATGT.............................................................................................................................................2111.001.00---1.00------------------------------------------------------------------------------------------------------------------
..............AAGATGAATTTGAAAACCGAACTAGAA.................................................................................................................................................2711.001.00-------------------------1.00--------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTA..............................................................................................................2611.001.00-----------------------------------------------------------------------1.00----------------------------------------------
...................GAATTTGAAAACCGAAA......................................................................................................................................................171.000.00----------------------------------------1.00-----------------------------------------------------------------------------
...................GAATTTGAAAACCGAACTAGAAATGTTGATG........................................................................................................................................3111.001.00---------------------------------------1.00------------------------------------------------------------------------------
.......................TTGAAAACCGAACTAGAAA................................................................................................................................................1911.001.00-------------------1.00--------------------------------------------------------------------------------------------------
......................TTTGAAAACCGAACTAGAAATGTTGATGTC......................................................................................................................................301.000.00-----------------------------------------------------1.00----------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAACTAG...................................................................................................................................................2711.001.00---------------------1.00------------------------------------------------------------------------------------------------
.......AAATTACAAGATGAATTTGAAAACCGA........................................................................................................................................................2711.001.00---1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................GTGAAAATCCCCTCCTC.....................1711.001.00----------------------------1.00-----------------------------------------------------------------------------------------
............ACAAGATGAATTTGAAAACCGAACT.....................................................................................................................................................2511.001.00----1.00-----------------------------------------------------------------------------------------------------------------
.....................ATTTGAAAACCGAACTAGAAATGTT............................................................................................................................................2511.001.00-------------------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................ATGATAAGCGTGAAAATA.............................181.000.00---1.00------------------------------------------------------------------------------------------------------------------
..................................................GTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGAA................................................8811.00145.00-----------1.00----------------------------------------------------------------------------------------------------------
................................................................................................................TTACTTCATTGGTATCTTTTTCAG..................................................2411.001.00--------------------------------------------------------------------------------------------1.00-------------------------
..............................CCGAACTAGAAATGTTGATGGTAAGACTTATAG...........................................................................................................................3311.001.00--------------------------------------1.00-------------------------------------------------------------------------------
..TTTCCAAATTACAAGATGAATTTGAAAACCGAACTAGAAATGTTGATGTC......................................................................................................................................501.000.00-1.00--------------------------------------------------------------------------------------------------------------------
...........................................GTTGATGGTAAGACTTATAGC..........................................................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00----------------------------
...........................................................................................................................................ATGATAAGCGTGAAAATCCCC..........................2111.001.00------1.00---------------------------------------------------------------------------------------------------------------
...........................AAACCGAACTAGAAATGT.............................................................................................................................................1811.001.00-------1.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................TGAATGTTGGCTTACTTCATTG...............................................................2211.001.00---------------------------------------------------------------------------1.00------------------------------------------
...........................................................................................................................................................................GAGGAGGAACAGAGAGTC181.000.00---------------------------------------------------------------------------------------------------------1.00------------
..............................CCGAACTAGAAATGTTGATGTCTA....................................................................................................................................241.000.00---------------------------------------------------------------------------------------------------1.00------------------
........AATTACAAGATGAATTTGAAAACCG.........................................................................................................................................................2511.001.00--------------1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................AGGAGGAGGAACAGAGAGTT201.000.00----------------------1.00-----------------------------------------------------------------------------------------------
..........................AAAACCGAACTAGAAATGTTGATG........................................................................................................................................2411.001.00--------------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................CTTACTTCATTGGTATCTTTTTCAG..................................................2511.001.00-------------------------------------------1.00--------------------------------------------------------------------------
.......................TTGAAAACCGAACTAGAAATGTTGATGTC......................................................................................................................................2911.004.00-----1.00----------------------------------------------------------------------------------------------------------------
...............AGATGAATTTGAAAACCGAACTAGAA.................................................................................................................................................2611.001.00---1.00------------------------------------------------------------------------------------------------------------------
.................................AACTAGAAATGTTGATGTCT.....................................................................................................................................2030.679.00--------0.67-------------------------------------------------------------------------------------------------------------
................................GAACTAGAAATGTTGATGTCT.....................................................................................................................................2120.506.00-----0.50----------------------------------------------------------------------------------------------------------------
.................................................................................................................................TTTTCAGTCTATGATAAG.......................................1820.500.50-------0.50--------------------------------------------------------------------------------------------------------------
................GATGAATTTGAAAACCG.........................................................................................................................................................1720.500.50-----------------0.50----------------------------------------------------------------------------------------------------
.......................................................................................................................ATTGGTATCTTTTTCAG..................................................1730.330.33------------------------0.33---------------------------------------------------------------------------------------------
.................................AACTAGAAATGTTGATGTC......................................................................................................................................1930.339.00-----------------------------------------0.33----------------------------------------------------------------------------
......................................................................................................................................................................CCGAGGAGGAGGAAC.....1580.250.25-----------------------------------------0.12--0.12-------------------------------------------------------------------------
........................................................................................................................................................................GAGGAGGAGGAACAGAGA1860.170.17---------------------------------------------------------------------------------------------------------------------0.17
.................................AACTAGAAATGTTGAT.........................................................................................................................................1660.170.17----------0.17-----------------------------------------------------------------------------------------------------------

Antisense strand
AATTTCCAAATTACAAGATGAATTTGAAAACCGAACTAGAAATGTTGATGGTAAGACTTATAGCTGATAATAAGTACTACTGTATATTTTCAGCTTAATTCTGAATGTTGGCTTACTTCATTGGTATCTTTTTCAGTCTATGATAAGCGTGAAAATCCCCTCCTCCCCGAGGAGGAGGAACAGAGA
.....................................................(((.(((.((((((.(((..((((....))))))).))))))))).)))....................................................................................
..................................................51..........................................................111.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191520(GSM715630)
89genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
.....................................................................................................................TCATTGGTATCTTTTTTA................................................... 181.000.00---------------------------------------------------------------1.00------------------------------------------------------
...............................................................................................................................CTTTTTCAGTCTATGATAACGA..................................... 221.000.00-----------------------------------------------------------1.00----------------------------------------------------------
.....................................AGAAATGTTGATGGTTTTT.................................................................................................................................. 191.000.00----------------------------------------------------------------------------------------------------------1.00-----------
........................................................................AGTACTACTGTATATCTG................................................................................................ 181.000.00-----------------------------------------------------------------------------------------------1.00----------------------
.............................................................................................................................ATCTTTTTCAGTCTATGTTT......................................... 201.000.00---1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................GTGAAAATCCCCTCCTCAGC.................. 201.000.00---------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................CTCCTCCTCGGGGAGG......... 1650.200.20-------------------------0.20--------------------------------------------------------------------------------------------