ID: uc001lnd.2_intron_1_0_chr10_135209282_f
GENE: (2)
chr10:135209232-135209716+


(1)
AGO2.ip 		(2)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(3)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGAGCAGCCTGAAGCTGGTGGACTGTATCATCGAGGTCCACGATGCCCGGATATCCTTTCACAGAGCAGGGGAGGCCCCTCTGCCTGAAGTCATATTACACATTAGAATTACCTGGGGAGGCTTTTAAAAATATGAATTGCGAGGCCCCTTTCTAGACCAGTTAATCAGAATCTGTGATGTGGGGTCCAGACTGCGTGTCTTTGAAACTTCATTGTTAATACATATATCTGCGTCACTCAAGCCTGACGGTACGGTGCAGCAGTGGAATCCTCTAGATGGGCTATGAAACTGTTTAAATGTTCCTGCCAACTGGGGCTTTTCTCCTGTACTTGAGGAATGAATTGGCAGGATGTGATGATTCGTTCACTGATGGCAAGAAAAAAAGTTGGTTGGCTGGTAAAGCTTTGGAGGAATTTTTACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCTCTGTTTCAGGAAACCCTTGGGCTTAA
.......................................................................................................................................................................................................................................................................................................................................................(((((((((((((.(((((.(((.(((((.............)))))..((((.....))))..))).))))).))))....)))))))))...................................................
.......................................................................................................................................................................................................................................................................................................................................................344........................................................................................435................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................................................................................................................................................................................................................................GGATGTGATGATTCGTTCACTGATG................................................................................................................25149.0049.0022.0012.004.00--4.00---1.00-2.00-1.00--1.00-----1.00---------------------------1.00-----
............................................................................................................................................................................................................................................................................................................................................................GGATGTGATGATTCGTTCACTGATGGA..............................................................................................................275.000.00--5.00-----------------------------------------------------
...................................GTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1514.004.00------------------1.00--1.00-------1.00------------------1.00-------
............................CATCGAGGTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003.00-------------1.002.00-----------------------------------------
..........GAAGCTGGTGGACTGTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00----2.00---------------------------------------------------
.............................ATCGAGGTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00-------------------------1.00-------------------------1.00----
........CTGAAGCTGGTGGACTGTATCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002.00---2.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................GGGCTATGAAACTGTTTAAATG.........................................................................................................................................................................................2211.001.00-------1.00------------------------------------------------
..................TGGACTGTATCATCGAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00--------
...................................................................................................................................................................AATCAGAATCTGTGACCT................................................................................................................................................................................................................................................................................................................181.000.00---------------1.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TTGAGGAATGAATTGGCAGGATGTGAT................................................................................................................................2711.001.00---------------------------------------1.00----------------
.................GTGGACTGTATCATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................................TGTGATGATTCGTTCACTGATG................................................................................................................2211.001.00----------------------------1.00---------------------------
.................................................................................................................................................................................ATGTGGGGTCCAGACTGCGTGCCTC...........................................................................................................................................................................................................................................................................................251.000.00------------1.00-------------------------------------------
.......CCTGAAGCTGGTGGACTGTATCATCGAGGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00--------------------------1.00-----------------------------
............AGCTGGTGGACTGTATCATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------------1.00----------------------
.......CCTGAAGCTGGTGGACTGTATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------------------------------------1.00------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCACATCCCACTTTCAGGCCG.................................2611.001.00---------1.00----------------------------------------------
.........TGAAGCTGGTGGACTGTATCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................................GAAACTGTTTAAATGTATC.....................................................................................................................................................................................191.000.00---------------------------1.00----------------------------
.......CCTGAAGCTGGTGGACTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00--------------------------------------
............................................................................................................................................................................................................................................................................................................................................GAGGAATGAATTGGCAGGATG....................................................................................................................................2111.001.00--------1.00-----------------------------------------------
......GCCTGAAGCTGGTGGAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------1.00------------------
................................GAGGTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00---------------
...........AAGCTGGTGGACTGTATCATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------1.00------------------------------------------------
.....................................................................GGGAGGCCCCTCTGCCTGAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------1.00------------------------
............................................................................................................................................................................................................................................................................TCCTCTAGATGGGCTATGAAACTGTTT..............................................................................................................................................................................................2711.001.00------------------------1.00-------------------------------
................................GAGGTCCACGATGCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------1.00-----------------
.........TGAAGCTGGTGGACTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------------------1.00-------------------
...........AAGCTGGTGGACTGTATCATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................................................................AGGATGTGATGATTCGTTCACTGATG................................................................................................................2611.001.00-1.00------------------------------------------------------
.....AGCCTGAAGCTGGTGGACTGTATCATCGAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00-----------------------------------------1.00--------------
.......CCTGAAGCTGGTGGACTGTATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------1.00--------------------------------
.GAGCAGCCTGAAGCTGGTGGACTGTATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00--------1.00-----------------------------------------------
............................................................................................................................................................................CTGTGATGTGGGGTCCAGACTGCG.................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------1.00---------------------
..........GAAGCTGGTGGACTGTATCATCGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00--------------------------------------------1.00-----------
...................................................................................................................................................................................................................................................................................................................................................................ATGATTCGTTCACTGATGGCAAG...........................................................................................................2311.001.00---------------1.00----------------------------------------
...........................................................................................................................................................................................................................................................ACGGTGCAGCAGTGGAA.........................................................................................................................................................................................................................1711.001.00---1.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................TTGGCAGGATGTGATGATTCGT.........................................................................................................................2211.001.00-------------------------------------------1.00------------
..................TGGACTGTATCATCGAGGTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00----------------------------------------------1.00---------
.................GTGGACTGTATCATCGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTACCTTAATTTTAAA....................................................201.000.00----------------------------------------------------1.00---
..........GAAGCTGGTGGACTGTATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00-----------------------------------
....................................................................................................CATTAGAATTACCTGGGGAGGCTTTT.......................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------1.00-----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................GGATGTGATGATTCGTTCACTGA..................................................................................................................2311.001.00-1.00------------------------------------------------------
......................CTGTATCATCGAGGTCCACGATGCCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00----------1.00---------------------------------------------
............................................................ACAGAGCAGGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................1640.250.25------------------------------------------------------0.25-
..............................................................................................................................................................................................................................................................................................................CCTGCCAACTGGGGCT.......................................................................................................................................................................1660.170.17---------0.17----------------------------------------------
................................................................................................TACACATTAGAATTACCTG..................................................................................................................................................................................................................................................................................................................................................................................1960.170.17----------------0.17---------------------------------------
.........................................................TTCACAGAGCAGGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................1670.140.14---0.14----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTTTGGAGG.........................................................................1580.120.12-------------------------------------------------------0.12

Antisense strand
AGAGCAGCCTGAAGCTGGTGGACTGTATCATCGAGGTCCACGATGCCCGGATATCCTTTCACAGAGCAGGGGAGGCCCCTCTGCCTGAAGTCATATTACACATTAGAATTACCTGGGGAGGCTTTTAAAAATATGAATTGCGAGGCCCCTTTCTAGACCAGTTAATCAGAATCTGTGATGTGGGGTCCAGACTGCGTGTCTTTGAAACTTCATTGTTAATACATATATCTGCGTCACTCAAGCCTGACGGTACGGTGCAGCAGTGGAATCCTCTAGATGGGCTATGAAACTGTTTAAATGTTCCTGCCAACTGGGGCTTTTCTCCTGTACTTGAGGAATGAATTGGCAGGATGTGATGATTCGTTCACTGATGGCAAGAAAAAAAGTTGGTTGGCTGGTAAAGCTTTGGAGGAATTTTTACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCTCTGTTTCAGGAAACCCTTGGGCTTAA
.......................................................................................................................................................................................................................................................................................................................................................(((((((((((((.(((((.(((.(((((.............)))))..((((.....))))..))).))))).))))....)))))))))...................................................
.......................................................................................................................................................................................................................................................................................................................................................344........................................................................................435................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................................................................................................................................................................................AATGTTCCTGCCAACTAT........................................................................................................................................................................... 182.000.00----2.00---------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CCAATTCATTCCTCAAGTACAG........................................................................................................................................... 2211.001.00-------1.00------------------------------------------------
.....................................................................GGGAGGCCCCTCTGCCTGAG............................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00------1.00-------------------------------------------------
........................................................................................................................................................................................................................................GTCACTCAAGCCTGATA............................................................................................................................................................................................................................................ 171.000.00---------------------------------------------1.00----------
....................................................................................................................................................................................................................TTGTTAATACATATATATAG............................................................................................................................................................................................................................................................. 201.000.00-------------------1.00------------------------------------
.........................................................................................................................................................................................................................AATACATATATCTGCGTCTT........................................................................................................................................................................................................................................................ 201.000.00------1.00-------------------------------------------------
......................................................................GGAGGCCCCTCTGCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00------1.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................GTTCACTGATGGCAATCTG........................................................................................................ 191.000.00-----------------------------------1.00--------------------
..............................................................................................................................AAAAATATGAATTGCGAA..................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------1.00---------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAGTTGGTTAG........................................................................................... 181.000.00-----------------------------------------------------1.00--
...........................................................................................................................GCAATTCATATTTTTAAA........................................................................................................................................................................................................................................................................................................................................................ 1830.330.33--0.33-----------------------------------------------------