ID: uc001kgd.2_intron_1_0_chr10_91053426_r.5p
GENE: (2)
chr10:91074100-91074349-


(2)
AGO2.ip
(5)
B-CELL
(3)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(2)
HEART
(3)
LIVER
(1)
OTHER
(9)
SKIN
(2)
XRN.ip

Sense strand
GGGTTCAAGAAATTCACCTGCCTCAGCCTCCCGAATAGTTGGGACTGCAGGTACCCACCACCATACCCACCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTAAACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTAGAGGCGTAAGCCACTGCGCTCGGGCATAAATTCACATTATTCTTAAACTTGTACACATGCAGATTTGAAC
...............................................................................................(((((............(((((((.(((....((((............))))...))).))))))))))))....................................................................................
..............................................................................................95.............................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
...................................................................................................GTTTCACCATGTTGGCCAGGAAAAC..............................................................................................................................257.000.00--7.00---------------------------------------------
.................................................................................................................................................TCCACCCGCCTTGGCCTCCCACTTA................................................................................252.000.00-------------2.00----------------------------------
...............................................................................................................TGGCCAGGATGGTCTCGATCTCTCGAG................................................................................................................272.000.00-2.00----------------------------------------------
........................................................................................................................................ACCTCGTGATCCACCCGCGAG.............................................................................................212.000.00--------1.00--------------1.00------------------------
..........................................................................................................................................................................GTTGGGATTAGAGGCTTT..............................................................182.000.00---2.00--------------------------------------------
...............................................................................................................TGGCCAGGATGGTCTCGACCCG.....................................................................................................................222.000.002.00-----------------------------------------------
.................................................................................ATTTTTAGTGGAGATGGGGTTTACC................................................................................................................................................252.000.00-2.00----------------------------------------------
.........................................................................................TGGAGATGGGGTTTCACCATGTTGGCCAGCCGG................................................................................................................................331.000.001.00-----------------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATCTCAAG..................................................................................................................261.000.00--------------------1.00---------------------------
........................................................................................................ACCATGTTGGCCAGGAGCGG..............................................................................................................................201.000.00--------1.00---------------------------------------
.............................................................................................................................................................................GGGATTAGAGGCGTAAAGAA.........................................................201.000.00------------1.00-----------------------------------
............................................................................................................................................CGTGATCCACCCGCCTAAGA..........................................................................................201.000.00---------------------------------------1.00--------
............................................................................................................TGTTGGCCAGGATGGTCTCGACGTC.....................................................................................................................251.000.00-1.00----------------------------------------------
..........................................................................................................CATGTTGGCCAGGATGGTGCCG..........................................................................................................................221.000.00-1.00----------------------------------------------
..................................................................................TTTTTAGTGGAGATGGGGTAGAA.................................................................................................................................................231.000.00---------------------------------1.00--------------
...........................................................................................................ATGTTGGCCAGGATGGTCTCGCTAC......................................................................................................................251.000.001.00-----------------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATCTCTAAT.................................................................................................................271.000.00-----------------------------------------1.00------
...................................................................................TTTTAGTGGAGATGGGGTTTGGTC...............................................................................................................................................241.000.00-1.00----------------------------------------------
....................................................................................TTTAGTGGAGATGGGGTTTGTC................................................................................................................................................221.000.001.00-----------------------------------------------
..................................................................................TTTTTAGTGGAGATGGGGCTCT..................................................................................................................................................221.000.001.00-----------------------------------------------
................................................................................TATTTTTAGTGGAGATGAGG......................................................................................................................................................201.000.00--------------------------------------1.00---------
...............................................................................GTATTTTTAGTGGAGATTAG.......................................................................................................................................................201.000.00---------------------------1.00--------------------
...........................................................................................................ATGTTGGCCAGGATGGTCCGAG.........................................................................................................................221.000.001.00-----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTCGAGCG......................................................................................................................241.000.001.00-----------------------------------------------
...................................................................................TTTTAGTGGAGATGGGGTTTGTC................................................................................................................................................231.000.001.00-----------------------------------------------
...................................TAGTTGGGACTGCAGGTG.....................................................................................................................................................................................................181.000.00---------1.00--------------------------------------
...............................................................................................................TGGCCAGGATGGTCTCGATCTCTAA..................................................................................................................2511.001.00--------------------------1.00---------------------
................................................................................TATTTTTAGTGGAGATGGGTCTT...................................................................................................................................................231.000.001.00-----------------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATCGCG....................................................................................................................241.000.001.00-----------------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATCGC.....................................................................................................................231.000.00---------1.00--------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGACCCT.....................................................................................................................231.000.00-1.00----------------------------------------------
..................................................................................TTTTTAGTGGAGATGGTGA.....................................................................................................................................................191.000.00----------------------------------1.00-------------
................................................................................TATTTTTAGTGGAGATGGGGCC....................................................................................................................................................221.000.00-1.00----------------------------------------------
...........................................................................TTTTGTATTTTTAGTGGAGATGGGGTTCCCC................................................................................................................................................311.000.00-1.00----------------------------------------------
.......................................................CACCACCATACCCACACG.................................................................................................................................................................................181.000.00-----------------------------------1.00------------
..................................................................................TTTTTAGTGGAGATGGGGTTTGTC................................................................................................................................................241.000.001.00-----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTCGACCCT.....................................................................................................................251.000.00-1.00----------------------------------------------
........................................................................................................ACCATGTTGGCCAGGATGGATA............................................................................................................................221.000.00------------------------------------------1.00-----
..............................................................................TGTATTTTTAGTGGAGATGGTAGA....................................................................................................................................................241.000.00----1.00-------------------------------------------
...........ATTCACCTGCCTCAGCCTGAG..........................................................................................................................................................................................................................211.000.001.00-----------------------------------------------
........................................................................................................ACCATGTTGGCCAGGATGGTCTCGACCTG.....................................................................................................................291.000.001.00-----------------------------------------------
...................................TAGTTGGGACTGCAG........................................................................................................................................................................................................1501.001.00-----1.00------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTCGAGAG......................................................................................................................241.000.00---1.00--------------------------------------------
.......................................................................................................................................................................AGTGTTGGGATTAGAAGGG................................................................191.000.00----------------------------------------1.00-------
..............................................................................TGTATTTTTAGTGGAGATGGGGTTCTA.................................................................................................................................................271.000.001.00-----------------------------------------------
..................................ATAGTTGGGACTGCAGGCGCC...................................................................................................................................................................................................211.000.001.00-----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTAGAG..........................................................................................................................201.000.00-----------1.00------------------------------------
.................................................................................ATTTTTAGTGGAGATGGGGCCTC..................................................................................................................................................231.000.001.00-----------------------------------------------
.................................AATAGTTGGGACTGCAGGTACCC..................................................................................................................................................................................................2311.001.00----------1.00-------------------------------------
............................................................................TTTGTATTTTTAGTGGAGATG.........................................................................................................................................................2101.001.00--------------------------------1.00---------------
....................................................................................................................AGGATGGTCTCGATCTCTAAGA................................................................................................................221.000.00----------1.00-------------------------------------
.................................................................................ATTTTTAGTGGAGATGGGGTTTGTC................................................................................................................................................251.000.00-1.00----------------------------------------------
..............................................................................TGTATTTTTAGTGGAGATGGGAAG....................................................................................................................................................241.000.00-------------------------------------1.00----------
...............................................................................GTATTTTTAGTGGAGATGGG.......................................................................................................................................................2001.001.00------------------------1.00-----------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATCCCAG...................................................................................................................251.000.00-1.00----------------------------------------------
.........................................................................ATTTTTGTATTTTTAGTGGAGATGGGGCTC...................................................................................................................................................301.000.00-1.00----------------------------------------------
...............................CGAATAGTTGGGACTGCA.........................................................................................................................................................................................................1820.500.50----------------------------------------------0.50-

Antisense strand
GGGTTCAAGAAATTCACCTGCCTCAGCCTCCCGAATAGTTGGGACTGCAGGTACCCACCACCATACCCACCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTAAACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTAGAGGCGTAAGCCACTGCGCTCGGGCATAAATTCACATTATTCTTAAACTTGTACACATGCAGATTTGAAC
...............................................................................................(((((............(((((((.(((....((((............))))...))).))))))))))))....................................................................................
..............................................................................................95.............................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
................................................................................................................................................................................................................AATTCACATTATTCTGCAG....................... 194.000.00----3.00-------------------------1.00-----------------
............................................................................................................TGTTGGCCAGGATGGTCTCGATGTG..................................................................................................................... 253.000.00-3.00----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTCGATCTGTG................................................................................................................... 272.000.002.00-----------------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGGCTG...................................................................................................................... 222.000.002.00-----------------------------------------------
......................................................................................................................................AAACCTCGTGATCCACCCGT................................................................................................ 202.000.00-----------------1.00-------------1.00----------------
.............................................................................................................GTTGGCCAGGATGGTCTCGATTGTG.................................................................................................................... 252.000.00-2.00----------------------------------------------
........GAAATTCACCTGCCTCAGCCTCTG.......................................................................................................................................................................................................................... 241.000.00-------------------------------------------1.00----
..........................................................................................................................................CTCGTGATCCACCCGCCTTGGCCTCCCATCAC................................................................................ 321.000.001.00-----------------------------------------------
.GGTTCAAGAAATTCACCGGC..................................................................................................................................................................................................................................... 201.000.00----------------1.00-------------------------------
...........................................................................................................ATGTTGGCCAGGATGGTCTCGATAC...................................................................................................................... 251.000.00------1.00-----------------------------------------
.....................CTCAGCCTCCCGAATCGAC.................................................................................................................................................................................................................. 191.000.00---------------1.00--------------------------------
............TTCACCTGCCTCAGCCTCCCGAACCA.................................................................................................................................................................................................................... 261.000.00-1.00----------------------------------------------
.GGTTCAAGAAATTCACCGG...................................................................................................................................................................................................................................... 191.000.00-------------------1.00----------------------------
.............................................................................................................GTTGGCCAGGATGGTCTTGCG........................................................................................................................ 211.000.00-1.00----------------------------------------------
...................................................................................................................CAGGATGGTCTCGATCTCCCC.................................................................................................................. 211.000.001.00-----------------------------------------------
.............TCACCTGCCTCAGCCTCCCGACA...................................................................................................................................................................................................................... 231.000.00---------------------------------------------1.00--
.........................................................................................................CCATGTTGGCCAGGATGGTCTCGATCGT..................................................................................................................... 281.000.00-1.00----------------------------------------------
...............ACCTGCCTCAGCCTCCCGATT...................................................................................................................................................................................................................... 211.000.00----------------------------1.00-------------------
.................................................................................................GGGTTTCACCATGTTGGCCAGGAGC................................................................................................................................ 251.000.00-1.00----------------------------------------------
..........................................................................................GGAGATGGGGTTTCACCATGTTGGCCAGGTTAA............................................................................................................................... 331.000.00-------1.00----------------------------------------
.............................................................................................................GTTGGCCAGGATGGTCTCGATCTCTGTGT................................................................................................................ 291.000.00-1.00----------------------------------------------
......................................................................................................AGAGATCGAGACCATCCTGGCCAACATGGTGA.................................................................................................................... 3201.001.00-----1.00------------------------------------------
.....................................................................................................................GGATGGTCTCGATCTCTGTGC................................................................................................................ 211.000.00---1.00--------------------------------------------
.............TCACCTGCCTCAGCCTCCCGAAG...................................................................................................................................................................................................................... 231.000.001.00-----------------------------------------------
........................................................................................GTGGAGATGGGGTTTCACCATGTTGGCCAGGGG................................................................................................................................. 331.000.00--------------1.00---------------------------------
..............CACCTGCCTCAGCCTCCCGTGAT..................................................................................................................................................................................................................... 231.000.00----------------------1.00-------------------------
...............ACCTGCCTCAGCCTCCCGTTT...................................................................................................................................................................................................................... 211.000.00------------------1.00-----------------------------
........................................................................................................................................ACCTCGTGATCCACCCGCCTTAAT.......................................................................................... 241.000.00-----------1.00------------------------------------
........................................................................................GTGGAGATGGGGTTTCACCATGTCAG........................................................................................................................................ 261.000.00-1.00----------------------------------------------
..........AATTCACCTGCCTCAGCCTCCCGAAGTT.................................................................................................................................................................................................................... 281.000.00--------------1.00---------------------------------
............TTCACCTGCCTCAGCCTCCCGAA....................................................................................................................................................................................................................... 231.000.001.00-----------------------------------------------
.......................................................................................................................ATGGTCTCGATCTCTAA.................................................................................................................. 171.000.00------------------------------------1.00-----------
......................................................................................................................GATGGTCTCGATCTCTGG.................................................................................................................. 181.000.001.00-----------------------------------------------
.........................................................................................................CCATGTTGGCCAGGATGGTCTCGATCTCC.................................................................................................................... 291.000.001.00-----------------------------------------------
...........ATTCACCTGCCTCAGCCTCCCGAATCT.................................................................................................................................................................................................................... 271.000.001.00-----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTGCAG........................................................................................................................ 221.000.001.00-----------------------------------------------
.............................................................................................................GTTGGCCAGGATGGTCTCGATTAC..................................................................................................................... 241.000.00------1.00-----------------------------------------
............TTCACCTGCCTCAGCCTCCCC......................................................................................................................................................................................................................... 211.000.001.00-----------------------------------------------
....................................................................................................................................CTAAACCTCGTGATCCGTT................................................................................................... 191.000.00-------------------------1.00----------------------
....................................................................................................................................................ACCCGCCTTGGCCTCCCACT.................................................................................. 201.000.00-------1.00----------------------------------------
..............................................................................................................TTGGCCAGGATGGTCTCGATGAC..................................................................................................................... 231.000.001.00-----------------------------------------------
.........................................................................................................CCATGTTGGCCAGGATGGTCTCGATCTCCA................................................................................................................... 301.000.001.00-----------------------------------------------
.....................................................................................................................GGATGGTCTCGATCTCGCC.................................................................................................................. 191.000.00---------------------1.00--------------------------
.........................................................................................................CCATGTTGGCCAGGATGGTGG............................................................................................................................ 211.000.00-----1.00------------------------------------------
......................................................................................................................................................CCGCCTTGGCCTCCCAAAGTGTTGTGG......................................................................... 271.000.00--------------------------------------------1.00---
.....................................................................................................................GGATGGTCTCGATCTCTGGCG................................................................................................................ 211.000.001.00-----------------------------------------------
............................................................................................................TGTTGGCCAGGATGGTCTCGATCTCTCGCC................................................................................................................ 301.000.00-1.00----------------------------------------------
............TTCACCTGCCTCAGCCTCCCGAACTCC................................................................................................................................................................................................................... 271.000.001.00-----------------------------------------------
..............................................................................................................................CGATCTCTAAACCTCGGTC......................................................................................................... 191.000.00------------1.00-----------------------------------
...............ACCTGCCTCAGCCTCCCGAAT...................................................................................................................................................................................................................... 211.000.001.00-----------------------------------------------
........................................................................................................................................ACCTCGTGATCCACCCGCCTTAT........................................................................................... 231.000.00------1.00-----------------------------------------
..........................................................................................................................................CTCGTGATCCACCCGCCTTAA........................................................................................... 211.000.00-----------------------------1.00------------------
.........GGAGGCTGAGGCAGGTGAATTT........................................................................................................................................................................................................................... 2280.250.25---------------0.25--------------------------------
......................................................................................................................................GCGGGTGGATCACGAGGTTT................................................................................................ 2050.200.20-----------------------------------------------0.20