ID: uc001jso.1_intron_3_0_chr10_73826879_r
GENE: (7)
chr10:73826829-73827420-


(2)
B-CELL
(7)
BRAIN
(4)
BREAST
(4)
CELL-LINE
(9)
CERVIX
(2)
HELA
(1)
LIVER
(2)
OTHER
(9)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GAACTCCAAGCAGAATGGCTCAGCCAGCAGTGTAGCCGGCCCGGCCAGCGGTAGGAAGCTTGCTGCTCTGCCTGGAGGAGGGAGGGAAATAGGGAAGGGGCTGAGGACACAGGTGTATGCTGGGCCAGTCTGCCCTTGTTCCTTCCTGCCAGACTCTGGGCCCTACAATCTGGGCCCCAAAAGAACCTTCACCCCAAAGAAGTCGGCTTCCACCAGAGCAGGAGGGATACCAGTTAGCTAGTAGGAAGAACTTAACATGGGTGGAGGGAGCTTAAACCCTGACATGGGTAGCCCAGGGAAAGCAGGAATTCTTTTCCCTGCAGGGCTTTCAGAACGGGTTTTGAATGGTTCAGGCATAGTCCTATGTGGAGGTGGAAGGAAGGACCTTTCGCCGTTCTCGAGTTTCTCAATCCCATGGTTAGATTCCAAGCTGCCCAGACCCAGAATAGAGGGCTGGGGCTGATGGCGAGGCGGAGAGATGGAGGGCTGGAGAAACGGCTGAATAGCCAGATGAAGCGTGCCTGAACCTGATCTTTTCCCAGGGCTGGACAAGAGCCTGGGGGCCAGCTGCAAGGACTCCATTGGCTGGATG
...................................................((((.(((.....)))...))))..((.(((((((((..((((.((.((((.((.(((....)))...)).))))...)).))))..))))))))).))..........................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150........................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040007(GSM532892)
G601T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................................................................................CAAAGAAGTCGGCTTTTG............................................................................................................................................................................................................................................................................................................................................................................................189.000.009.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGGCTGGAGAAACGGCTGAATAGCCAGATGAAGCGTGCCTGAACCTGATCTTTTCCCAG..................................................6316.006.00--6.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTGGGGCTGCGTA..............................................................................................................................194.000.00----4.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGAGATGGAGGGCTGGAGAAACGGC.............................................................................................2813.003.00-------1.00--2.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAACGGCTGGCA........................................................................................182.000.00---2.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGATGGAGGGCTGGAGAAACGGC.............................................................................................2712.002.00-----1.00--------------------------1.00-----------
..................................................................................................................................................................................................CAAAGAAGTCGGCTTTTT............................................................................................................................................................................................................................................................................................................................................................................................182.000.002.00-------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGTGGAAGGACTA.................................................................................................................................................................................................................191.000.00---1.00----------------------------------------
..................................................................................................................................................................................................CAAAGAAGTCGGCTTGTG............................................................................................................................................................................................................................................................................................................................................................................................181.000.001.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGAGGGCTGTAG....................................................................................................181.000.00--------------------1.00-----------------------
.......................................CCCGGCCAGCGGTAGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------1.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................AGGGCTTTCAGAACGGGTT............................................................................................................................................................................................................................................................1911.001.00-------------------------------------1.00------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGGCTGGAGAAACGGC.............................................................................................2111.001.00-------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAGAGCCTGGGGGCCAGCTGCAAGGACT..............3311.001.00-1.00------------------------------------------
...............................................................................................................................................................................................CCCCAAAGAAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----1.00--------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ATGTGGAGGTGGAAGGCGTC.................................................................................................................................................................................................................201.000.00--------1.00-----------------------------------
............................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGTGGAAGGACT..................................................................................................................................................................................................................181.000.00-------------------1.00------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACAAGAGCCTGGGGGCCAGCTGCAAGGAC...............3411.001.00-1.00------------------------------------------
.............................GTGTAGCCGGCCCGGCCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00--------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTGCAAGGACTCCATTGCT......231.000.00-1.00------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTGCCTGAAC.................................................................1511.001.00------------------------1.00-------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAACGGCTGGCAC.......................................................................................191.000.00---------------------------------1.00----------
........................CAGCAGTGTAGCCGGCCCGGCCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------1.00-------------------------------
.AACTCCAAGCAGAATGGCTCAGCCAGCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-1.00------------------------------------------
.....................................................................................................................................................................................................................................................................TGGAGGGAGCTTAAAGGTG........................................................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00----------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCTTTTCCCAGGGC...............................................1711.001.00-1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGGCTGGAGAAACGGC.............................................................................................2211.001.00-------1.00------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATAGAGGGCTGTGC.....................................................................................................................................181.000.00----------------1.00---------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAACGGCTGGC.........................................................................................171.000.00-----------------------------------1.00--------
..................................................................................................................................................................................................CAAAGAAGTCGGCTTTGG............................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------1.00------------------------------
.........................................................................................................................................................................................................................................................................GGGAGCTTAAACCCTCTT.....................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-----------------
...............TGGCTCAGCCAGCAGGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------1.00--------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGGGCTGGGGCTG..................................................................................................................................1811.001.00-----------------------------1.00--------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAGAGCCTGGGGGCCAGCTG......................2511.001.00------1.00-------------------------------------
...............................................................................................................................................................................................................................................AGTAGGAAGAACTTAACATGGGTGGAG......................................................................................................................................................................................................................................................................................................................................2711.001.00-1.00------------------------------------------
.....................................................................................................TGAGGACACAGGTGTATGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------1.00--------------------------------
........................CAGCAGTGTAGCCGGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------1.00-------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGACAAGAGCCTGGGGGC............................2211.001.00------1.00-------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAACGGCTGGCC........................................................................................181.000.00---1.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGACAAGAGCCTGGGGGC............................2111.001.00-1.00------------------------------------------
...............................................GCGGTAGGAAGCTTGCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------1.00---------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAGGACTCCATTGGCTGGAT.2611.001.00-1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGAAACGGCTGGGA........................................................................................181.000.00---1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CCTATGTGGAGGTGGATCT.....................................................................................................................................................................................................................191.000.00--------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCGTGCCTGAACAAA..............................................................191.000.00----------------------1.00---------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCTGGAGAAACGGC.............................................................................................1911.001.00------------------------------1.00-------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAGAGGGCTGGGGCTGAT................................................................................................................................2211.001.00-----------------------1.00--------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGGAGAGATGGAGGGC.........................................................................................................2011.001.00-----1.00--------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGACTCCATTGGCT.....1811.001.00-------------------------------1.00------------
.............................................................................................................................................................................................................................................CTAGTAGGAAGAACTCTG.................................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00--------------------------------------
..................................................................................................................................................................................AAAAGAACCTTCACCATT............................................................................................................................................................................................................................................................................................................................................................................................................181.000.001.00-------------------------------------------
...................TCAGCCAGCAGTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50------0.50-------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGGAGAAACGGCTG...........................................................................................1820.500.50----------------------------------------0.50---
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGGGCTGGGGCTGA.................................................................................................................................1720.500.50------0.50-------------------------------------
................................................................................................................................................................................................CCCAAAGAAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................1520.500.50---------------------------------------0.50----
..................................GCCGGCCCGGCCAGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.330.33-----------------------------------------0.33--
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAGCTGCAAGGAC...............1740.250.25------------------------------------------0.25-
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGAGCCTGGGG..............................1660.170.17-0.17------------------------------------------

Antisense strand
GAACTCCAAGCAGAATGGCTCAGCCAGCAGTGTAGCCGGCCCGGCCAGCGGTAGGAAGCTTGCTGCTCTGCCTGGAGGAGGGAGGGAAATAGGGAAGGGGCTGAGGACACAGGTGTATGCTGGGCCAGTCTGCCCTTGTTCCTTCCTGCCAGACTCTGGGCCCTACAATCTGGGCCCCAAAAGAACCTTCACCCCAAAGAAGTCGGCTTCCACCAGAGCAGGAGGGATACCAGTTAGCTAGTAGGAAGAACTTAACATGGGTGGAGGGAGCTTAAACCCTGACATGGGTAGCCCAGGGAAAGCAGGAATTCTTTTCCCTGCAGGGCTTTCAGAACGGGTTTTGAATGGTTCAGGCATAGTCCTATGTGGAGGTGGAAGGAAGGACCTTTCGCCGTTCTCGAGTTTCTCAATCCCATGGTTAGATTCCAAGCTGCCCAGACCCAGAATAGAGGGCTGGGGCTGATGGCGAGGCGGAGAGATGGAGGGCTGGAGAAACGGCTGAATAGCCAGATGAAGCGTGCCTGAACCTGATCTTTTCCCAGGGCTGGACAAGAGCCTGGGGGCCAGCTGCAAGGACTCCATTGGCTGGATG
...................................................((((.(((.....)))...))))..((.(((((((((..((((.((.((((.((.(((....)))...)).))))...)).))))..))))))))).))..........................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150........................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040007(GSM532892)
G601T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCCAGACCCAGAGA................................................................................................................................................. 181.000.00--------------------------------------1.00-----
.................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAAGGAAGGAGAGT............................................................................................................................................................................................................ 191.000.00---------1.00----------------------------------
......................................................................................................................GCTGGGCCAGTCTGCCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------1.00---------
..................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGGAAGGACGGA............................................................................................................................................................................................................ 181.000.00------------------------------------1.00-------
.................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAAGGAAGGATAGA............................................................................................................................................................................................................ 191.000.00---------------------1.00----------------------
.................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAAGGAAGGAGCGT............................................................................................................................................................................................................ 191.000.00--------------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................GTTCAGGCATAGTCCTTCTG................................................................................................................................................................................................................................. 201.000.00------------------1.00-------------------------
.................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAAGGAAGGATCGT............................................................................................................................................................................................................ 191.000.00-------------------------1.00------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAGATGAAGCGCTG....................................................................... 181.000.00---------------1.00----------------------------
.....................................................................................................................................................................TTGGGGCCCAGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................ 1530.330.33-------------0.33------------------------------
...................................................................................................................................AGGAAGGAACAAGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1690.110.11-------------------------------------------0.11