ID: uc001hqm.1_intron_13_0_chr1_227171335_f
GENE: ADCK3(14)
chr1:227171285-227171511+


(2)
AGO2.ip 		(2)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGTCAACAACCTCATGGCCGTGTTGAACATGAGCAACATGCTTCCAGAAGGTCTGAGGCTAGGTGGTTGGGTCAAGGGCAGGAGTGGGTGGCAGGCATCTGTGTTGGGTTCTGGGGACCAGAGGGGGTCCTCCCTGCAGAGCCCCCTTCCTCGCTGATGCCCTCCTCCCTGGCCCAGGCCTGTTCCCCGAGCACCTGATCGACGTGCTGAGGCGGGAGCTGGCCCTG
....................................................((((.((.(((((.((..((((...((....))...)))))).))))))).)))).((((((...))))))........................................................................................................
..................................................51...........................................................................128.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337SRR553574(SRX182780)
source: Heart. (Heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
...................................................TCTGAGGCTAGGTGGTTGGGTCAAG.......................................................................................................................................................25114.0014.0010.00-2.00---2.00----------------------------------------
..................................................................................................................................................................................................CTGATCGACGTGCTGAGGCGGGA..........2315.005.00---5.00-------------------------------------------
...................................................TCTGAGGCTAGGTGGTTGGGTCAAA.......................................................................................................................................................2514.002.00--4.00--------------------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTCAAG.......................................................................................................................................................2614.004.004.00----------------------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGGT...........................................................................................................................................................2214.004.00-4.00---------------------------------------------
...................................................TCTGAGGCTAGGTGGTTGGGTCAA........................................................................................................................................................2412.002.002.00----------------------------------------------
..............................................................................................................................................................................................GCACCTGATCGACGTGCTGAGGCGG............2512.002.00---------2.00-------------------------------------
........................................................................................................TGGGTTCTGGGGACCAGAGGG......................................................................................................2112.002.00-2.00---------------------------------------------
...............................................AAGGTCTGAGGCTAGGG...................................................................................................................................................................172.000.00-------------1.00---------------------1.00-----------
...................................................TCTGAGGCTAGGTGGTTGGGTCAAGG......................................................................................................................................................2612.002.00--2.00--------------------------------------------
...................................................TCTGAGGCTAGGTGGTTGGGTCAAGGGCAGGAG...............................................................................................................................................3312.002.002.00----------------------------------------------
......................TTGAACATGAGCAACATGCTTCCAGAAG.................................................................................................................................................................................2812.002.00--------2.00--------------------------------------
...............................................................................................................................................................................AGGCCTGTTCCCCGAGCACCTGAT............................2411.001.00------------1.00----------------------------------
...............................................................................................................................................................................................................TGAGGCGGGAGCTGGCACTG201.000.001.00----------------------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTAT.........................................................................................................................................................2411.004.00-1.00---------------------------------------------
.....................................................................................................................................................................................................ATCGACGTGCTGAGGCGGGAGCTGGCCCCGG311.000.00-------------------------1.00---------------------
..................................................GTCTGAGGCTAGGTGGTTGGG............................................................................................................................................................2111.001.001.00----------------------------------------------
.............................................AGAAGGTCTGAGGCTAGGGC..................................................................................................................................................................201.000.00----------1.00------------------------------------
................................................AGGTCTGAGGCTAGGGCC.................................................................................................................................................................181.000.00------------------------------1.00----------------
...................................................TCTGAGGCTAGGTGGTATAG............................................................................................................................................................201.000.00-1.00---------------------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGAAA..........................................................................................................................................................231.000.00-1.00---------------------------------------------
................................................................................................................................................................................................ACCTGATCGACGTGCTG..................1711.001.00----1.00------------------------------------------
.........................................................................AAGGGCAGGAGTGGGAAC........................................................................................................................................181.000.00-----------1.00-----------------------------------
..........................................................................................................................................................TGATGCCCTCCTCCCTGGCCCA...................................................2211.001.00--------------1.00--------------------------------
...................................................TCTGAGGCTAGGTGGTTGGGTCAAGGGC....................................................................................................................................................2811.001.00-----------------------1.00-----------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTTT.........................................................................................................................................................2411.004.00-1.00---------------------------------------------
.................................................................................................................................................................................................CCTGATCGACGTGCTGAGGCGGGAG.........2511.001.00---------------------------------1.00-------------
..................................................................................................................................................................................................CTGATCGACGTGCTG..................1511.001.00--------------------------------------1.00--------
...............................................................................................................................................................................................CACCTGATCGACGTGCT...................1711.001.00----1.00------------------------------------------
......................................................GAGGCTAGGTGGTTGGGTTAAG.......................................................................................................................................................221.000.001.00----------------------------------------------
.........................AACATGAGCAACATGCGTCA......................................................................................................................................................................................201.000.00------------------------------------1.00----------
.........................................................................AAGGGCAGGAGTGGGTGGCAGGCCCTT...............................................................................................................................271.000.00---------------------------1.00-------------------
..............TGGCCGTGTTGAACATGAGCA................................................................................................................................................................................................2111.001.00-------------------------------1.00---------------
...................................................TCTGAGGCTAGGTGGTTGGAAAA.........................................................................................................................................................231.000.00-------------------------------------1.00---------
......................................................................................................................................................................................TTCCCCGAGCACCTGATCGACGTGCTGAGGC..............3111.001.00--------------------------1.00--------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTCAA........................................................................................................................................................2511.001.001.00----------------------------------------------
..............................................GAAGGTCTGAGGCTAGGG...................................................................................................................................................................181.000.00-------------------1.00---------------------------
................................................................................................................................................................................................ACCTGATCGACGTGCTGAGGCGGGAG.........2611.001.00-----------------------------1.00-----------------
...................................................TCTGAGGCTAGGTGGTTGGGTCT.........................................................................................................................................................231.000.00------------------------1.00----------------------
...................................................TCTGAGGCTAGGTGGTTGGGTCAAGGG.....................................................................................................................................................2711.001.001.00----------------------------------------------
...........................................................................................................................................................................................................GTGCTGAGGCGGGAGCTGGC....2011.001.00---------------1.00-------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTC..........................................................................................................................................................2311.001.001.00----------------------------------------------
.............................................................................................................................................................................................AGCACCTGATCGACGTGCTGAGGC..............2411.001.00--------------------1.00--------------------------
...................................................TCTGAGGCTAGGTGGTTTT.............................................................................................................................................................191.000.00----------------------------1.00------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTCAAA.......................................................................................................................................................2611.001.001.00----------------------------------------------
...............................................................................................................................................................................................CACCTGATCGACGTGCTGAGGCG.............2311.001.00----1.00------------------------------------------
.....ACAACCTCATGGCCGTGTTGAAGG......................................................................................................................................................................................................241.000.00-1.00---------------------------------------------
..................................................GTCTGAGGCTAGGTGGTTGGGTCA.........................................................................................................................................................2411.001.00-----------------1.00-----------------------------
..................................................................TTGGGTCAAGGGCAGGAG...............................................................................................................................................1811.001.00------------------1.00----------------------------
................................................................................................................................................................................................ACCTGATCGACGTGCTGAGGCG.............2211.001.00--------------------------------1.00--------------
.........................................................GCTAGGTGGTTGGGTCAAGGGCAGGA................................................................................................................................................2611.001.001.00----------------------------------------------
..................................................................................................................................................................TCCTCCCTGGCCCAGGCTTT.............................................201.000.00---------------------------------------1.00-------
..............................................................................................................................................................................................................CTGAGGCGGGAGCTGGC....1720.500.50-----------------------------------------0.50-----
........................................................GGCTAGGTGGTTGGGT...........................................................................................................................................................1620.500.50--0.50--------------------------------------------
...............................................................................................................................................................................AGGCCTGTTCCCCGA.....................................1520.500.50-----0.50-----------------------------------------
.............................................AGAAGGTCTGAGGCTAGGTG..................................................................................................................................................................2020.500.50----------------------------------------0.50------
..............................................................................CAGGAGTGGGTGGCAGGC...................................................................................................................................1830.330.33--------------------------------------------0.33--
..........................................TCCAGAAGGTCTGAGGC........................................................................................................................................................................1740.250.25----------------------------------------------0.25

Antisense strand
TGTCAACAACCTCATGGCCGTGTTGAACATGAGCAACATGCTTCCAGAAGGTCTGAGGCTAGGTGGTTGGGTCAAGGGCAGGAGTGGGTGGCAGGCATCTGTGTTGGGTTCTGGGGACCAGAGGGGGTCCTCCCTGCAGAGCCCCCTTCCTCGCTGATGCCCTCCTCCCTGGCCCAGGCCTGTTCCCCGAGCACCTGATCGACGTGCTGAGGCGGGAGCTGGCCCTG
....................................................((((.((.(((((.((..((((...((....))...)))))).))))))).)))).((((((...))))))........................................................................................................
..................................................51...........................................................................128.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343337SRR553574(SRX182780)
source: Heart. (Heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.............................................................................................................................................................TGGGCCAGGGAGGAGGGCA................................................... 1912.002.00-------2.00---------------------------------------
..........................................................................................CCCCAGAACCCAACACAGATGCCTGC............................................................................................................... 2611.001.00----------------------1.00------------------------
............................................................................................................................................GCCCCCTTCCTCGCTGGGC.................................................................... 191.000.00-----1.00-----------------------------------------
.............................................................................................................................................................................................AGCACCTGATCGACGTGAAAG................. 211.000.00---------------------1.00-------------------------
.....................................................................................GGGTGGCAGGCATCTGTTGGC......................................................................................................................... 211.000.00-----1.00-----------------------------------------
...............................AGCAACATGCTTCCAGTGG................................................................................................................................................................................. 191.000.00----------------1.00------------------------------
......................................................................................................................................................TCGCTGATGCCCTCCCTGG.......................................................... 191.000.00----------------------------------1.00------------
..............................................................................TGCCTGCCACCCACTCCTG.................................................................................................................................. 1920.500.50-------------------------------------------0.50---
...............................................................................................AGAACCCAACACAGATG................................................................................................................... 1720.500.50------------------------------------------0.50----
............................................................................................................................................CAGCGAGGAAGGGGGC....................................................................... 1630.330.33---------------------------------------------0.33-