ID: uc001hmc.2_intron_17_0_chr1_220312482_f.3p
GENE: (18)
chr1:220313325-220313574+


(2)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(5)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(31)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TAAAATAGTATTTTCTGAGTGTAGTCAAATGTGTTATCCAGAAATGACATTTGGAAGATTCCCAGGAGTTCTTGCATATTGCCTGTTTTGTATTTGTCTCATTGAAACATATTTTTGAAAGGAGCATATTTTGCTTGTGATGACTTACATTTTCATTTGCCTGTCTCAGCTTCCAAATTTATTTTGGCTTTGTTCCCTAGATTACCGAATTATACAAACAATATGATTTTGGAAAAGTTGTTCGGCTGTT
...............................................................................................(((((((.....((......))....(((((.....))))))))).)))..........................................................................................................
...............................................................................................96...........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................GCTTGTGATGACTTACATGGA.................................................................................................21200.000.0025.0026.0022.0023.0015.0010.008.009.00-7.006.003.004.003.00-3.001.003.003.002.002.002.001.002.002.002.00--1.002.00-1.00-1.00---1.001.001.00---1.00-----1.00----1.001.001.001.001.00-1.00------
...................................................................................................................................TGCTTGTGATGACTTACATGGA.................................................................................................2234.000.0026.003.001.00--2.001.00-------------------------------------------------------1.00----
.......................................................................................................................................................................................................................AAACAATATGATTTTGGAA................1917.007.00--------7.00----------------------------------------------------------
....................................................................................................................................GCTTGTGATGACTTACATG...................................................................................................194.000.00-1.00---1.00-----------------------------------1.00----1.00--------------------
...............................................................................................................................................................................................................AATTATACAAACAATATG.........................1813.003.00--------------2.00-----------1.00----------------------------------------
....................................................................................................................................GCTTGTGATGACTTACATGGC.................................................................................................213.000.00-1.00---1.001.00------------------------------------------------------------
...............................................................................................................................................................................................................AATTATACAAACAATATGATCTTG...................242.000.00--------------1.00-----------1.00----------------------------------------
...................................................................................................................................................................................................................................TTTGGAAAAGTTGTTCGGC....1912.002.00----------------2.00--------------------------------------------------
.....................................................................................................................................CTTGTGATGACTTACATGGA.................................................................................................202.000.00-------------1.00----------------------1.00------------------------------
............................................................................................................................................................................................................................ATATGATTTTGGAAAAGTTGTTC.......2312.002.00---------------------------2.00---------------------------------------
.......................................................................................................................................................................................................................AAACAATATGATTTTGGCA................191.000.00--------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................GAAAAGTTGTTCGGCTGTTACGC231.000.00--------------------------------------------1.00----------------------
......................................................................................................................................................................................................................................GGAAAAGTTGTTCGGCTGTT2011.001.00-----------------------------------------------1.00-------------------
...................................................................................................................................TGCTTGTGATGACTTACATGGC.................................................................................................221.000.00-----------1.00-------------------------------------------------------
.....................................................................................................................................................................................................................................TGGAAAAGTTGTTCGGCTGT.2011.001.00----------------------------------------------------1.00--------------
...................................................................................................................................................................................................................................TTTGGAAAAGTTGTTCGGCTGTT2311.001.00-------------------------------------------------------------1.00-----
......................................................................................................................................TTGTGATGACTTACAGGGA.................................................................................................191.000.00-1.00-----------------------------------------------------------------
......................................................................................................................................TTGTGATGACTTACATTGGAC...............................................................................................211.000.00------------------------------------------------1.00------------------
..............................................................................................................................................................................................................................ATGATTTTGGAAAAGTTGTTCGG.....2311.001.00-----------------------------------------------------------1.00-------
...............................................................................................................................................................................................................................TGATTTTGGAAAAGTTGTTCGG.....2211.001.00-----------------------------------------------------1.00-------------
..........TTTTCTGAGTGTAGTCAAATG...........................................................................................................................................................................................................................2111.001.00----------------------------------1.00--------------------------------
.......................................................................................................................................TGTGATGACTTACATAGA.................................................................................................181.000.00--1.00----------------------------------------------------------------
.............................................................................................................................................................................................................CGAATTATACAAACAATATGAT.......................2211.001.00-------------------1.00-----------------------------------------------
.............................................................................................................................................................................................................CGAATTATACAAACAATATG.........................2011.001.00------------------------------------------1.00------------------------
....................................................................................................ATTGAAACATATTTTGGT....................................................................................................................................181.000.00---------------------------------------------1.00---------------------
....................................................................................................................................GCTTGTGATGACTTACATCGA.................................................................................................211.000.00-1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................AATATGATTTTGGAAAAGTTGTTCGG.....2611.001.00----------------------1.00--------------------------------------------
.......................................................................................................................................TGTGATGACTTACATCGA.................................................................................................181.000.00-1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................AATATGATTTTGGAAAAGTTGTTCGGCT...2811.001.00--------------------------------1.00----------------------------------
.................................................................................................................................................................................................................................ATTTTGGAAAAGTTGTTCGG.....2011.001.00------------------------------1.00------------------------------------
....................................................................................................................................GCTTGTGATGACTTACATGAA.................................................................................................211.000.00---------1.00---------------------------------------------------------
....................................................................................................................................................................................................................................TTGGAAAAGTTGTTCGGCTGTTAAGG261.000.00----------------------------------------1.00--------------------------
......................................................................................................................................................................................................AGATTACCGAATTATACAAACAA.............................2311.001.00-----------------------------------1.00-------------------------------
...................................................................................................................................TGCTTGTGATGACTTACACGGA.................................................................................................221.000.001.00------------------------------------------------------------------
....................................................................................................................................GCTTGTGATGACTTACATAGA.................................................................................................211.000.00-1.00-----------------------------------------------------------------
..............................................................................................................................................................GCCTGTCTCAGCTTCGCT..........................................................................181.000.00--------------------------------------------------1.00----------------
....................................................................................................................................GCTTGTGATGACTTACA.....................................................................................................1721.001.00------------------------------0.50--------------------------------0.50---
....................................................................................................................................GCTTGTGATGACTTACATGTA.................................................................................................211.000.00-----1.00-------------------------------------------------------------
.......................................................................................................................................TGTGATGACTTACATTTT.................................................................................................1820.500.50-0.50-----------------------------------------------------------------
....................................................................................................................................GCTTGTGATGACTTACAGGGA.................................................................................................2120.501.00--0.50----------------------------------------------------------------
....................................................................................................................................GCTTGTGATGACTTACAAGGC.................................................................................................2120.501.00------0.50------------------------------------------------------------
....................................................................................................................................GCTTGTGATGACTTACAGGAA.................................................................................................2120.501.00--0.50----------------------------------------------------------------
................................................................................................................................................................................................................................GATTTTGGAAAAGTTGTT........1830.330.33-----------------------------------------------------------------0.33-
...........................................................TCCCAGGAGTTCTTGC...............................................................................................................................................................................1650.200.20------------------------------------------------------------------0.20

Antisense strand
TAAAATAGTATTTTCTGAGTGTAGTCAAATGTGTTATCCAGAAATGACATTTGGAAGATTCCCAGGAGTTCTTGCATATTGCCTGTTTTGTATTTGTCTCATTGAAACATATTTTTGAAAGGAGCATATTTTGCTTGTGATGACTTACATTTTCATTTGCCTGTCTCAGCTTCCAAATTTATTTTGGCTTTGTTCCCTAGATTACCGAATTATACAAACAATATGATTTTGGAAAAGTTGTTCGGCTGTT
...............................................................................................(((((((.....((......))....(((((.....))))))))).)))..........................................................................................................
...............................................................................................96...........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................TTCCCAGGAGTTCTTGAAA............................................................................................................................................................................. 191.000.00---------------------------------------------------1.00---------------
............................................................ATGCAAGAACTCCTGGG............................................................................................................................................................................. 1711.001.00----------------------------1.00--------------------------------------
......................................................................................................................................................................................................ATAATTCGGTAATCT..................................... 1520.500.50----------------------------------------------------------------0.50--